DEAD-box ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 185 - 364 | 3.1e-50 | DEAD/DEAH box helicase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 175 |
| Acc36I | ACCTGC | 1 cut(s) | 175 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1174 |
| AccII | CGCG | 1 cut(s) | 112 |
| AclWI | GGATC | 1 cut(s) | 226 |
| AcoI | YGGCCR | 1 cut(s) | 289 |
| AcsI | RAATTY | 3 cut(s) | 31, 782, 1178 |
| AdeI | CACNNNGTG | 1 cut(s) | 1040 |
| AfaI | GTAC | 3 cut(s) | 1118, 1153, 1246 |
| AfeI | AGCGCT | 1 cut(s) | 76 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 98, 340, 961, 1037, 1174 |
| AgsI | TTSAA | 2 cut(s) | 365, 992 |
| AjnI | CCWGG | 3 cut(s) | 889, 1036, 1305 |
| Alw21I | GWGCWC | 4 cut(s) | 91, 106, 616, 832 |
| Alw26I | GTCTC | 5 cut(s) | 443, 685, 1084, 1277, 1384 |
| AlwI | GGATC | 1 cut(s) | 226 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1093 |
| Aor51HI | AGCGCT | 1 cut(s) | 76 |
| AoxI | GGCC | 4 cut(s) | 289, 676, 1095, 1236 |
| ApeKI | GCWGC | 8 cut(s) | 26, 38, 77, 273, 385, 562, 638, 847 |
| ApoI | RAATTY | 3 cut(s) | 31, 782, 1178 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 971, 1003 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 438, 1182 |
| AspLEI | GCGC | 2 cut(s) | 77, 187 |
| AspS9I | GGNCC | 5 cut(s) | 114, 331, 676, 1216, 1236 |
| AsuHPI | GGTGA | 3 cut(s) | 470, 518, 1199 |
| AvaII | GGWCC | 3 cut(s) | 114, 331, 1216 |
| BanII | GRGCYC | 1 cut(s) | 832 |
| BauI | CACGAG | 1 cut(s) | 767 |
| BbsI | GAAGAC | 2 cut(s) | 54, 441 |
| Bbv12I | GWGCWC | 4 cut(s) | 91, 106, 616, 832 |
| BbvI | GCAGC | 8 cut(s) | 13, 50, 64, 285, 397, 574, 625, 834 |
| BccI | CCATC | 2 cut(s) | 297, 598 |
| BceAI | ACGGC | 2 cut(s) | 276, 373 |
| BciT130I | CCWGG | 3 cut(s) | 891, 1038, 1307 |
| BclI | TGATCA | 1 cut(s) | 397 |
| BcoDI | GTCTC | 5 cut(s) | 443, 685, 1084, 1277, 1384 |
| BfaI | CTAG | 3 cut(s) | 744, 921, 1149 |
| BfmI | CTRYAG | 1 cut(s) | 36 |
| BfoI | RGCGCY | 1 cut(s) | 78 |
| BfuAI | ACCTGC | 1 cut(s) | 175 |
| BmcAI | AGTACT | 1 cut(s) | 1153 |
| Bme1390I | CCNGG | 3 cut(s) | 891, 1038, 1307 |
| Bme18I | GGWCC | 3 cut(s) | 114, 331, 1216 |
| BmgT120I | GGNCC | 5 cut(s) | 114, 331, 676, 1216, 1236 |
| BmiI | GGNNCC | 2 cut(s) | 162, 332 |
| BmrFI | CCNGG | 3 cut(s) | 891, 1038, 1307 |
| BmsI | GCATC | 2 cut(s) | 142, 415 |
| BoxI | GACNNNNGTC | 1 cut(s) | 249 |
| BpiI | GAAGAC | 2 cut(s) | 54, 441 |
| BpmI | CTGGAG | 2 cut(s) | 156, 932 |
| BsaI | GGTCTC | 1 cut(s) | 685 |
| BsaJI | CCNNGG | 4 cut(s) | 292, 334, 586, 1305 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 98, 340, 961, 1037, 1174 |
| Bse118I | RCCGGY | 1 cut(s) | 80 |
| Bse1I | ACTGG | 5 cut(s) | 625, 802, 861, 1098, 1319 |
| Bse3DI | GCAATG | 1 cut(s) | 929 |
| BseBI | CCWGG | 3 cut(s) | 891, 1038, 1307 |
| BseDI | CCNNGG | 4 cut(s) | 292, 334, 586, 1305 |
| BseGI | GGATG | 1 cut(s) | 308 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 98, 340, 961, 1037, 1174 |
| BseMI | GCAATG | 1 cut(s) | 929 |
| BseMII | CTCAG | 1 cut(s) | 33 |
| BseNI | ACTGG | 5 cut(s) | 625, 802, 861, 1098, 1319 |
| BseRI | GAGGAG | 1 cut(s) | 840 |
| BseXI | GCAGC | 8 cut(s) | 13, 50, 64, 285, 397, 574, 625, 834 |
| BseYI | CCCAGC | 1 cut(s) | 191 |
| BsgI | GTGCAG | 1 cut(s) | 581 |
| Bsh1236I | CGCG | 1 cut(s) | 112 |
| BshFI | GGCC | 4 cut(s) | 291, 678, 1097, 1238 |
| BsiHKAI | GWGCWC | 4 cut(s) | 91, 106, 616, 832 |
| BsiSI | CCGG | 1 cut(s) | 81 |
| BslFI | GGGAC | 4 cut(s) | 110, 344, 356, 611 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 98, 340, 961, 1037, 1174 |
| BsmAI | GTCTC | 5 cut(s) | 443, 685, 1084, 1277, 1384 |
| BsmFI | GGGAC | 4 cut(s) | 110, 344, 356, 611 |
| BsmI | GAATGC | 1 cut(s) | 978 |
| BsnI | GGCC | 4 cut(s) | 291, 678, 1097, 1238 |
| Bso31I | GGTCTC | 1 cut(s) | 685 |
| Bsp1286I | GDGCHC | 4 cut(s) | 91, 106, 616, 832 |
| Bsp143I | GATC | 4 cut(s) | 199, 218, 397, 967 |
| BspANI | GGCC | 4 cut(s) | 291, 678, 1097, 1238 |
| BspCNI | CTCAG | 1 cut(s) | 34 |
| BspFNI | CGCG | 1 cut(s) | 112 |
| BspHI | TCATGA | 2 cut(s) | 669, 1186 |
| BspLI | GGNNCC | 2 cut(s) | 162, 332 |
| BspMAI | CTGCAG | 1 cut(s) | 40 |
| BspMI | ACCTGC | 1 cut(s) | 175 |
| BspPI | GGATC | 1 cut(s) | 226 |
| BspTNI | GGTCTC | 1 cut(s) | 685 |
| BsrDI | GCAATG | 1 cut(s) | 929 |
| BsrFI | RCCGGY | 1 cut(s) | 80 |
| BsrI | ACTGG | 5 cut(s) | 625, 802, 861, 1098, 1319 |
| BssAI | RCCGGY | 1 cut(s) | 80 |
| BssECI | CCNNGG | 4 cut(s) | 292, 334, 586, 1305 |
| BssMI | GATC | 4 cut(s) | 199, 218, 397, 967 |
| BssSI | CACGAG | 1 cut(s) | 767 |
| BssT1I | CCWWGG | 1 cut(s) | 586 |
| Bst2BI | CACGAG | 1 cut(s) | 767 |
| Bst2UI | CCWGG | 3 cut(s) | 891, 1038, 1307 |
| Bst4CI | ACNGT | 4 cut(s) | 146, 251, 335, 410 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 35 |
| BstC8I | GCNNGC | 5 cut(s) | 6, 189, 570, 715, 1260 |
| BstDEI | CTNAG | 2 cut(s) | 42, 777 |
| BstDSI | CCRYGG | 2 cut(s) | 292, 334 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 959, 1035 |
| BstF5I | GGATG | 1 cut(s) | 308 |
| BstFNI | CGCG | 1 cut(s) | 112 |
| BstH2I | RGCGCY | 1 cut(s) | 78 |
| BstHHI | GCGC | 2 cut(s) | 77, 187 |
| BstKTI | GATC | 4 cut(s) | 202, 221, 400, 970 |
| BstMAI | GTCTC | 5 cut(s) | 443, 685, 1084, 1277, 1384 |
| BstMBI | GATC | 4 cut(s) | 199, 218, 397, 967 |
| BstNI | CCWGG | 3 cut(s) | 891, 1038, 1307 |
| BstNSI | RCATGY | 4 cut(s) | 572, 612, 1030, 1229 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 249 |
| BstSCI | CCNGG | 3 cut(s) | 889, 1036, 1305 |
| BstSFI | CTRYAG | 1 cut(s) | 36 |
| BstUI | CGCG | 1 cut(s) | 112 |
| BstV1I | GCAGC | 8 cut(s) | 13, 50, 64, 285, 397, 574, 625, 834 |
| BstV2I | GAAGAC | 2 cut(s) | 54, 441 |
| BstX2I | RGATCY | 1 cut(s) | 218 |
| BstYI | RGATCY | 1 cut(s) | 218 |
| BsuRI | GGCC | 4 cut(s) | 291, 678, 1097, 1238 |
| BtgI | CCRYGG | 2 cut(s) | 292, 334 |
| BtsCI | GGATG | 1 cut(s) | 308 |
| BtsI | GCAGTG | 1 cut(s) | 93 |
| BtsIMutI | CAGTG | 4 cut(s) | 93, 415, 1069, 1312 |
| BveI | ACCTGC | 1 cut(s) | 175 |
| Cac8I | GCNNGC | 5 cut(s) | 6, 189, 570, 715, 1260 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1093 |
| CciI | TCATGA | 2 cut(s) | 669, 1186 |
| CfoI | GCGC | 2 cut(s) | 77, 187 |
| Cfr10I | RCCGGY | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 5 cut(s) | 114, 331, 676, 1216, 1236 |
| CseI | GACGC | 1 cut(s) | 518 |
| CsiI | ACCWGGT | 1 cut(s) | 1036 |
| Csp6I | GTAC | 3 cut(s) | 1117, 1152, 1245 |
| CviAII | CATG | 9 cut(s) | 12, 569, 609, 670, 982, 1027, 1187, 1226, 1352 |
| CviQI | GTAC | 3 cut(s) | 1117, 1152, 1245 |
| DdeI | CTNAG | 2 cut(s) | 42, 777 |
| DpnI | GATC | 4 cut(s) | 201, 220, 399, 969 |
| DpnII | GATC | 4 cut(s) | 199, 218, 397, 967 |
| DraIII | CACNNNGTG | 1 cut(s) | 1040 |
| EaeI | YGGCCR | 1 cut(s) | 289 |
| EciI | GGCGGA | 1 cut(s) | 138 |
| Ecl136II | GAGCTC | 1 cut(s) | 830 |
| Eco130I | CCWWGG | 1 cut(s) | 586 |
| Eco24I | GRGCYC | 1 cut(s) | 832 |
| Eco31I | GGTCTC | 1 cut(s) | 685 |
| Eco47I | GGWCC | 3 cut(s) | 114, 331, 1216 |
| Eco47III | AGCGCT | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 830 |
| EcoICRI | GAGCTC | 1 cut(s) | 830 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 959, 1035 |
| EcoRII | CCWGG | 3 cut(s) | 889, 1036, 1305 |
| EcoT14I | CCWWGG | 1 cut(s) | 586 |
| EcoT38I | GRGCYC | 1 cut(s) | 832 |
| ErhI | CCWWGG | 1 cut(s) | 586 |
| FaeI | CATG | 9 cut(s) | 15, 572, 612, 673, 985, 1030, 1190, 1229, 1355 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1106, 1138 |
| FaqI | GGGAC | 4 cut(s) | 110, 344, 356, 611 |
| FatI | CATG | 9 cut(s) | 11, 568, 608, 669, 981, 1026, 1186, 1225, 1351 |
| FauI | CCCGC | 2 cut(s) | 138, 843 |
| FbaI | TGATCA | 1 cut(s) | 397 |
| FokI | GGATG | 1 cut(s) | 315 |
| FriOI | GRGCYC | 1 cut(s) | 832 |
| FspBI | CTAG | 3 cut(s) | 744, 921, 1149 |
| GlaI | GCGC | 2 cut(s) | 76, 186 |
| GsaI | CCCAGC | 1 cut(s) | 195 |
| GsuI | CTGGAG | 2 cut(s) | 156, 932 |
| HaeII | RGCGCY | 1 cut(s) | 78 |
| HaeIII | GGCC | 4 cut(s) | 291, 678, 1097, 1238 |
| HapII | CCGG | 1 cut(s) | 81 |
| HgaI | GACGC | 1 cut(s) | 518 |
| HhaI | GCGC | 2 cut(s) | 77, 187 |
| Hin1II | CATG | 9 cut(s) | 15, 572, 612, 673, 985, 1030, 1190, 1229, 1355 |
| Hin6I | GCGC | 2 cut(s) | 75, 185 |
| HinP1I | GCGC | 2 cut(s) | 75, 185 |
| HinfI | GANTC | 3 cut(s) | 666, 1190, 1301 |
| HpaII | CCGG | 1 cut(s) | 81 |
| HphI | GGTGA | 3 cut(s) | 470, 518, 1199 |
| Hpy166II | GTNNAC | 4 cut(s) | 117, 355, 704, 1247 |
| Hpy188I | TCNGA | 5 cut(s) | 160, 531, 1102, 1195, 1266 |
| Hpy188III | TCNNGA | 4 cut(s) | 401, 596, 670, 1187 |
| Hpy8I | GTNNAC | 4 cut(s) | 117, 355, 704, 1247 |
| Hpy99I | CGWCG | 1 cut(s) | 112 |
| HpyAV | CCTTC | 5 cut(s) | 162, 667, 1131, 1229, 1285 |
| HpyCH4III | ACNGT | 4 cut(s) | 146, 251, 335, 410 |
| HpyCH4IV | ACGT | 2 cut(s) | 123, 1268 |
| HpyCH4V | TGCA | 8 cut(s) | 29, 38, 491, 537, 562, 934, 1229, 1340 |
| HpyF3I | CTNAG | 2 cut(s) | 42, 777 |
| HpySE526I | ACGT | 2 cut(s) | 123, 1268 |
| Hsp92II | CATG | 9 cut(s) | 15, 572, 612, 673, 985, 1030, 1190, 1229, 1355 |
| HspAI | GCGC | 2 cut(s) | 75, 185 |
| Ksp22I | TGATCA | 1 cut(s) | 397 |
| Kzo9I | GATC | 4 cut(s) | 199, 218, 397, 967 |
| LmnI | GCTCC | 8 cut(s) | 94, 109, 175, 270, 748, 827, 835, 1295 |
| Lsp1109I | GCAGC | 8 cut(s) | 13, 50, 64, 285, 397, 574, 625, 834 |
| LweI | GCATC | 2 cut(s) | 142, 415 |
| MabI | ACCWGGT | 1 cut(s) | 1036 |
| MaeI | CTAG | 3 cut(s) | 744, 921, 1149 |
| MaeII | ACGT | 2 cut(s) | 123, 1268 |
| MaeIII | GTNAC | 4 cut(s) | 140, 458, 506, 1205 |
| MalI | GATC | 4 cut(s) | 201, 220, 399, 969 |
| MboI | GATC | 4 cut(s) | 199, 218, 397, 967 |
| MboII | GAAGA | 5 cut(s) | 54, 377, 446, 747, 906 |
| MflI | RGATCY | 1 cut(s) | 218 |
| MhlI | GDGCHC | 4 cut(s) | 91, 106, 616, 832 |
| MluCI | AATT | 6 cut(s) | 31, 579, 782, 834, 1008, 1178 |
| MmeI | TCCRAC | 2 cut(s) | 1114, 1192 |
| MroXI | GAANNNNTTC | 2 cut(s) | 438, 1182 |
| MseI | TTAA | 3 cut(s) | 417, 516, 1399 |
| MslI | CAYNNNNRTG | 1 cut(s) | 443 |
| MspA1I | CMGCKG | 5 cut(s) | 41, 276, 565, 638, 847 |
| MspI | CCGG | 1 cut(s) | 81 |
| MspR9I | CCNGG | 3 cut(s) | 891, 1038, 1307 |
| Mva1269I | GAATGC | 1 cut(s) | 978 |
| MvaI | CCWGG | 3 cut(s) | 891, 1038, 1307 |
| MvnI | CGCG | 1 cut(s) | 112 |
| NdeII | GATC | 4 cut(s) | 199, 218, 397, 967 |
| NlaIII | CATG | 9 cut(s) | 15, 572, 612, 673, 985, 1030, 1190, 1229, 1355 |
| NlaIV | GGNNCC | 2 cut(s) | 162, 332 |
| NmuCI | GTSAC | 3 cut(s) | 458, 506, 1205 |
| NspI | RCATGY | 4 cut(s) | 572, 612, 1030, 1229 |
| PaeI | GCATGC | 1 cut(s) | 572 |
| PagI | TCATGA | 2 cut(s) | 669, 1186 |
| PaqCI | CACCTGC | 1 cut(s) | 175 |
| PctI | GAATGC | 1 cut(s) | 978 |
| PdmI | GAANNNNTTC | 2 cut(s) | 438, 1182 |
| PfeI | GAWTC | 3 cut(s) | 666, 1190, 1301 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1174 |
| PfoI | TCCNGGA | 1 cut(s) | 889 |
| PshAI | GACNNNNGTC | 1 cut(s) | 249 |
| Psp124BI | GAGCTC | 1 cut(s) | 832 |
| Psp6I | CCWGG | 3 cut(s) | 889, 1036, 1305 |
| PspFI | CCCAGC | 1 cut(s) | 191 |
| PspGI | CCWGG | 3 cut(s) | 889, 1036, 1305 |
| PspN4I | GGNNCC | 2 cut(s) | 162, 332 |
| PspPI | GGNCC | 5 cut(s) | 114, 331, 676, 1216, 1236 |
| PstI | CTGCAG | 1 cut(s) | 40 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1093 |
| PsuI | RGATCY | 1 cut(s) | 218 |
| PvuII | CAGCTG | 3 cut(s) | 41, 638, 847 |
| RsaI | GTAC | 3 cut(s) | 1118, 1153, 1246 |
| RsaNI | GTAC | 3 cut(s) | 1117, 1152, 1245 |
| RseI | CAYNNNNRTG | 1 cut(s) | 443 |
| SacI | GAGCTC | 1 cut(s) | 832 |
| SaqAI | TTAA | 3 cut(s) | 417, 516, 1399 |
| Sau3AI | GATC | 4 cut(s) | 199, 218, 397, 967 |
| Sau96I | GGNCC | 5 cut(s) | 114, 331, 676, 1216, 1236 |
| ScaI | AGTACT | 1 cut(s) | 1153 |
| ScrFI | CCNGG | 3 cut(s) | 891, 1038, 1307 |
| SduI | GDGCHC | 4 cut(s) | 91, 106, 616, 832 |
| SexAI | ACCWGGT | 1 cut(s) | 1036 |
| SfaNI | GCATC | 2 cut(s) | 142, 415 |
| SfcI | CTRYAG | 1 cut(s) | 36 |
| SinI | GGWCC | 3 cut(s) | 114, 331, 1216 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 443 |
| SphI | GCATGC | 1 cut(s) | 572 |
| Sse9I | AATT | 6 cut(s) | 31, 579, 782, 834, 1008, 1178 |
| SspI | AATATT | 2 cut(s) | 526, 940 |
| SspMI | CTAG | 3 cut(s) | 744, 921, 1149 |
| SstI | GAGCTC | 1 cut(s) | 832 |
| StyD4I | CCNGG | 3 cut(s) | 889, 1036, 1305 |
| StyI | CCWWGG | 1 cut(s) | 586 |
| TaaI | ACNGT | 4 cut(s) | 146, 251, 335, 410 |
| TaiI | ACGT | 2 cut(s) | 126, 1271 |
| TaqI | TCGA | 2 cut(s) | 202, 970 |
| TaqII | GACCGA | 1 cut(s) | 243 |
| TasI | AATT | 6 cut(s) | 31, 579, 782, 834, 1008, 1178 |
| TatI | WGTACW | 2 cut(s) | 1116, 1151 |
| TauI | GCSGC | 5 cut(s) | 279, 282, 285, 315, 568 |
| TfiI | GAWTC | 3 cut(s) | 666, 1190, 1301 |
| Tru1I | TTAA | 3 cut(s) | 417, 516, 1399 |
| Tru9I | TTAA | 3 cut(s) | 417, 516, 1399 |
| TscAI | CASTG | 4 cut(s) | 100, 415, 1069, 1319 |
| TseFI | GTSAC | 3 cut(s) | 458, 506, 1205 |
| TseI | GCWGC | 8 cut(s) | 26, 38, 77, 273, 385, 562, 638, 847 |
| Tsp45I | GTSAC | 3 cut(s) | 458, 506, 1205 |
| TspDTI | ATGAA | 9 cut(s) | 144, 447, 686, 777, 827, 1175, 1203, 1340, 1340 |
| TspGWI | ACGGA | 1 cut(s) | 96 |
| TspRI | CASTG | 4 cut(s) | 100, 415, 1069, 1319 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1174 |
| VpaK11BI | GGWCC | 3 cut(s) | 114, 331, 1216 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 959, 1035 |
| XapI | RAATTY | 3 cut(s) | 31, 782, 1178 |
| XceI | RCATGY | 4 cut(s) | 572, 612, 1030, 1229 |
| XmnI | GAANNNNTTC | 2 cut(s) | 438, 1182 |
| XspI | CTAG | 3 cut(s) | 744, 921, 1149 |
| ZrmI | AGTACT | 1 cut(s) | 1153 |