Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

3703273 .. 3705284

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGAACTTCATGGGCGGATTCTGTAGCAAATTCTCAAGGAGAGAATTCGACTGCTGGTTCATCTGACAATAACAGCTCATCTCGGCCTGCACGATCAACTTATGTCCCACCACATCTTCGTAATAGGCCGCCGTCTTCTGATGCCCCGGCTCCTTCACAGCCTGCCCCATCACCAGCCAATGACCGCGTAGGTTACAATGGGCCTGCGCCTGGCCCTGCCTGGGGTGCTGGCAGTTCTAGGCGTGATGTTGGGCGCCTGGGATATGGTTCCAGTGGTGGTCGAGGTGGTGGTGGTTGGAACAATAGAAGTGGGGGATGGGACCGTGGGAGGGAGCGGGAAGTAAACCCTTTTGCTGATGAAGACATCTCAGAACCGACGTTTAGTGATCGAGAACACACAGGCATTAACTTTGATGCTTATGAGGATATCCCAGTGGAAACTAGTGGGGATAATGTGCCACCACCTGTGAATACTTTTGCAGAGATAGACTTAGGGGAGGCATTGAATTTAAATATTCGGAGGTGCAGGTATGTGAAGCCAACTCCTGTTCAGCGTCATGCAATACCTATTTCTCTTGGAGGTAGAGATTTGATGGCTTGTGCTCAGACGGGTTCAGGGAAGACAGCTGCTTTCTGCTTTCCAATTATTAGTGGAATCATGCTGGGGCAGTTTGCTCAGAGACCTCGTGGAGCACGTACTGTGTACCCTCTTGCTCTTATTCTCTCACCTACCAGAGAACTCTCTTGCCAGATCCATGAAGAAACTAGAAAATTTGCTTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATAAACCAACAGTTGAGAGAACTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCGGGACGCTTGGTAGATCTGCTTGAGAGGGCAAGAGTGTCATTGGAGATCGATCAGATATTTGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

317

Amino Acids

33.92

Weight (kDa)

6.92

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	337
AccII	CGCG	1 cut(s)	189
AciI	CCGC	4 cut(s)	17, 131, 187, 337
AclWI	GGATC	1 cut(s)	748
AcsI	RAATTY	4 cut(s)	31, 46, 508, 773
AcyI	GRCGYC	1 cut(s)	256
AfaI	GTAC	2 cut(s)	700, 707
AfiI	CCNNNNNNNGG	4 cut(s)	212, 223, 224, 331
AgsI	TTSAA	1 cut(s)	508
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	3 cut(s)	211, 221, 258
AluBI	AGCT	2 cut(s)	78, 629
AluI	AGCT	2 cut(s)	78, 629
Alw21I	GWGCWC	3 cut(s)	607, 697, 823
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	748
AoxI	GGCC	4 cut(s)	86, 128, 203, 214
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	4 cut(s)	31, 46, 508, 773
AspLEI	GCGC	2 cut(s)	211, 258
AspS9I	GGNCC	3 cut(s)	203, 215, 322
AsuC2I	CCSGG	2 cut(s)	149, 882
AsuHPI	GGTGA	2 cut(s)	165, 720
AvaII	GGWCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	687
BbsI	GAAGAC	3 cut(s)	129, 369, 629
Bbv12I	GWGCWC	3 cut(s)	607, 697, 823
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	3 cut(s)	178, 312, 589
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	3 cut(s)	213, 223, 260
BcnI	CCSGG	2 cut(s)	149, 882
BcoDI	GTCTC	1 cut(s)	676
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	3 cut(s)	240, 444, 768
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	519
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	2 cut(s)	131, 630
BlsI	GCNGC	2 cut(s)	132, 631
Bme1390I	CCNGG	5 cut(s)	149, 213, 223, 260, 882
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	203, 215, 322
BmiI	GGNNCC	4 cut(s)	153, 257, 271, 323
BmrFI	CCNGG	5 cut(s)	149, 213, 223, 260, 882
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	133, 406
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	3 cut(s)	129, 369, 629
BpuEI	CTTGAG	3 cut(s)	21, 869, 923
BpuMI	CCSGG	2 cut(s)	149, 882
Bsa29I	ATCGAT	1 cut(s)	930
BsaAI	YACGTR	1 cut(s)	698
BsaHI	GRCGYC	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	4 cut(s)	147, 222, 259, 325
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 223, 224, 331
Bse1I	ACTGG	3 cut(s)	273, 434, 793
BseBI	CCWGG	3 cut(s)	213, 223, 260
BseCI	ATCGAT	1 cut(s)	930
BseDI	CCNNGG	4 cut(s)	147, 222, 259, 325
BseGI	GGATG	1 cut(s)	323
BseLI	CCNNNNNNNGG	4 cut(s)	212, 223, 224, 331
BseMII	CTCAG	3 cut(s)	384, 620, 692
BseNI	ACTGG	3 cut(s)	273, 434, 793
BseRI	GAGGAG	2 cut(s)	831, 870
BseXI	GCAGC	1 cut(s)	616
BseYI	CCCAGC	1 cut(s)	664
BsgI	GTGCAG	2 cut(s)	75, 547
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	88, 130, 205, 216
BshNI	GGYRCC	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	930
BsiHKAI	GWGCWC	3 cut(s)	607, 697, 823
BsiSI	CCGG	2 cut(s)	149, 881
BslFI	GGGAC	3 cut(s)	92, 335, 897
BslI	CCNNNNNNNGG	4 cut(s)	212, 223, 224, 331
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	3 cut(s)	92, 335, 897
BsnI	GGCC	4 cut(s)	88, 130, 205, 216
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	3 cut(s)	607, 697, 823
Bsp143I	GATC	6 cut(s)	95, 388, 753, 895, 927, 931
BspACI	CCGC	4 cut(s)	17, 131, 187, 337
BspANI	GGCC	4 cut(s)	88, 130, 205, 216
BspCNI	CTCAG	3 cut(s)	383, 619, 691
BspDI	ATCGAT	1 cut(s)	930
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	153, 257, 271, 323
BspMI	ACCTGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	748
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	676
BsrBI	CCGCTC	1 cut(s)	337
BsrI	ACTGG	3 cut(s)	273, 434, 793
BssECI	CCNNGG	4 cut(s)	147, 222, 259, 325
BssMI	GATC	6 cut(s)	95, 388, 753, 895, 927, 931
BssNI	GRCGYC	1 cut(s)	256
BssSI	CACGAG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	3 cut(s)	213, 223, 260
Bst4CI	ACNGT	3 cut(s)	326, 703, 837
BstACI	GRCGYC	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	4 cut(s)	90, 165, 207, 232
BstDEI	CTNAG	4 cut(s)	370, 493, 606, 678
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	211, 258
BstKTI	GATC	6 cut(s)	98, 391, 756, 898, 930, 934
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	6 cut(s)	95, 388, 753, 895, 927, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	3 cut(s)	213, 223, 260
BstSCI	CCNGG	5 cut(s)	147, 211, 221, 258, 880
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	3 cut(s)	129, 369, 629
BstX2I	RGATCY	2 cut(s)	753, 895
BstYI	RGATCY	2 cut(s)	753, 895
Bsu15I	ATCGAT	1 cut(s)	930
BsuRI	GGCC	4 cut(s)	88, 130, 205, 216
BsuTUI	ATCGAT	1 cut(s)	930
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	323
BtsIMutI	CAGTG	2 cut(s)	280, 441
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	4 cut(s)	90, 165, 207, 232
CfoI	GCGC	2 cut(s)	211, 258
Cfr13I	GGNCC	3 cut(s)	203, 215, 322
ClaI	ATCGAT	1 cut(s)	930
CseI	GACGC	2 cut(s)	545, 894
Csp6I	GTAC	2 cut(s)	699, 706
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	4 cut(s)	12, 560, 661, 758
CviQI	GTAC	2 cut(s)	699, 706
DdeI	CTNAG	4 cut(s)	370, 493, 606, 678
DinI	GGCGCC	1 cut(s)	257
DpnI	GATC	6 cut(s)	97, 390, 755, 897, 929, 933
DpnII	GATC	6 cut(s)	95, 388, 753, 895, 927, 931
DraI	TTTAAA	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	676
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	211, 221, 258
EcoRV	GATATC	1 cut(s)	430
EgeI	GGCGCC	1 cut(s)	257
EheI	GGCGCC	1 cut(s)	257
FaeI	CATG	4 cut(s)	15, 563, 664, 761
FaiI	YATR	9 cut(s)	13, 105, 267, 423, 534, 561, 662, 759, 813
FaqI	GGGAC	3 cut(s)	92, 335, 897
FatI	CATG	4 cut(s)	11, 559, 660, 757
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	131, 630
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	131, 630
FspBI	CTAG	3 cut(s)	240, 444, 768
GlaI	GCGC	2 cut(s)	210, 257
GluI	GCNGC	2 cut(s)	131, 630
GsaI	CCCAGC	1 cut(s)	668
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	88, 130, 205, 216
HapII	CCGG	2 cut(s)	149, 881
HgaI	GACGC	2 cut(s)	545, 894
HhaI	GCGC	2 cut(s)	211, 258
Hin1I	GRCGYC	1 cut(s)	256
Hin1II	CATG	4 cut(s)	15, 563, 664, 761
Hin6I	GCGC	2 cut(s)	209, 256
HinP1I	GCGC	2 cut(s)	209, 256
HinfI	GANTC	2 cut(s)	20, 657
HpaII	CCGG	2 cut(s)	149, 881
HphI	GGTGA	2 cut(s)	165, 720
Hpy166II	GTNNAC	2 cut(s)	346, 706
Hpy188I	TCNGA	7 cut(s)	67, 142, 373, 522, 609, 681, 936
Hpy188III	TCNNGA	2 cut(s)	392, 948
Hpy8I	GTNNAC	2 cut(s)	346, 706
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	3 cut(s)	326, 703, 837
HpyCH4IV	ACGT	2 cut(s)	380, 697
HpyCH4V	TGCA	4 cut(s)	92, 482, 528, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	4 cut(s)	370, 493, 606, 678
HpySE526I	ACGT	2 cut(s)	380, 697
Hsp92I	GRCGYC	1 cut(s)	256
Hsp92II	CATG	4 cut(s)	15, 563, 664, 761
HspAI	GCGC	2 cut(s)	209, 256
KasI	GGCGCC	1 cut(s)	255
Kzo9I	GATC	6 cut(s)	95, 388, 753, 895, 927, 931
LmnI	GCTCC	4 cut(s)	157, 334, 692, 818
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	2 cut(s)	133, 406
MaeI	CTAG	3 cut(s)	240, 444, 768
MaeII	ACGT	2 cut(s)	380, 697
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	6 cut(s)	97, 390, 755, 897, 929, 933
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	6 cut(s)	95, 388, 753, 895, 927, 931
MboII	GAAGA	5 cut(s)	110, 129, 374, 634, 773
MflI	RGATCY	2 cut(s)	753, 895
MhlI	GDGCHC	3 cut(s)	607, 697, 823
MluCI	AATT	5 cut(s)	31, 46, 508, 645, 773
Mly113I	GGCGCC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	278
MseI	TTAA	2 cut(s)	408, 512
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	149, 881
MspR9I	CCNGG	5 cut(s)	149, 213, 223, 260, 882
MvaI	CCWGG	3 cut(s)	213, 223, 260
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	227
NarI	GGCGCC	1 cut(s)	256
NciI	CCSGG	2 cut(s)	149, 882
NdeII	GATC	6 cut(s)	95, 388, 753, 895, 927, 931
NlaIII	CATG	4 cut(s)	15, 563, 664, 761
NlaIV	GGNNCC	4 cut(s)	153, 257, 271, 323
NmeAIII	GCCGAG	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	2 cut(s)	91, 694
PfeI	GAWTC	2 cut(s)	20, 657
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	2 cut(s)	132, 631
PluTI	GGCGCC	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	698
Psp6I	CCWGG	3 cut(s)	211, 221, 258
PspFI	CCCAGC	1 cut(s)	664
PspGI	CCWGG	3 cut(s)	211, 221, 258
PspN4I	GGNNCC	4 cut(s)	153, 257, 271, 323
PspPI	GGNCC	3 cut(s)	203, 215, 322
PsuI	RGATCY	2 cut(s)	753, 895
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	700, 707
RsaNI	GTAC	2 cut(s)	699, 706
SaqAI	TTAA	2 cut(s)	408, 512
SatI	GCNGC	2 cut(s)	131, 630
Sau3AI	GATC	6 cut(s)	95, 388, 753, 895, 927, 931
Sau96I	GGNCC	3 cut(s)	203, 215, 322
ScrFI	CCNGG	5 cut(s)	149, 213, 223, 260, 882
SduI	GDGCHC	3 cut(s)	607, 697, 823
SfaNI	GCATC	2 cut(s)	133, 406
SfcI	CTRYAG	1 cut(s)	24
SfoI	GGCGCC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	322
SmiI	ATTTAAAT	1 cut(s)	513
SmlI	CTYRAG	3 cut(s)	36, 848, 902
SmoI	CTYRAG	3 cut(s)	36, 848, 902
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	5 cut(s)	31, 46, 508, 645, 773
SsiI	CCGC	4 cut(s)	17, 131, 187, 337
SspDI	GGCGCC	1 cut(s)	255
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	3 cut(s)	240, 444, 768
StyD4I	CCNGG	5 cut(s)	147, 211, 221, 258, 880
SwaI	ATTTAAAT	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	326, 703, 837
TaiI	ACGT	2 cut(s)	383, 700
TaqI	TCGA	4 cut(s)	50, 283, 391, 930
TasI	AATT	5 cut(s)	31, 46, 508, 645, 773
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	20, 657
Tru1I	TTAA	2 cut(s)	408, 512
Tru9I	TTAA	2 cut(s)	408, 512
TscAI	CASTG	2 cut(s)	280, 441
TseI	GCWGC	1 cut(s)	629
TspDTI	ATGAA	3 cut(s)	51, 375, 774
TspRI	CASTG	2 cut(s)	280, 441
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	4 cut(s)	31, 46, 508, 773
XspI	CTAG	3 cut(s)	240, 444, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.