Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8138978.1

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 594

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8138978.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ctgaaagtgagggagggggatgacgtcggcaatgtgggtataaatttcgatgcttacgaggatattccggtggaggcgagcggcgaggacgtgccggcgccggcgagcacttttggggagattgatttgggggagtgcttgaacaacaacatcaagaggtgtaggtacgtgaagccgacgccggttcagcgccacgcgattccgatagccatggccggccgggacttgatggcttgtgctcagaccgggtccggaaagacggcggctttttgcttccccattatcagtggagtgttgactaagtgtgtggagaggtctcagagtaatggggatggttggactgtgtttcccagagctctcattttgtctccgacgagagagttggctagtcagatatttgaggaagctgagaagtttgcttatcagagtggggcaaaagtggctgttgtttatggtggagcgccgatgggtcagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

159

Amino Acids

16.98

Weight (kDa)

5.03

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	81
AccII	CGCG	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	251
AciI	CCGC	2 cut(s)	81, 263
AcoI	YGGCCR	2 cut(s)	213, 217
AcsI	RAATTY	1 cut(s)	43
AcyI	GRCGYC	3 cut(s)	24, 98, 179
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	91
AluBI	AGCT	2 cut(s)	356, 407
AluI	AGCT	2 cut(s)	356, 407
Alw21I	GWGCWC	3 cut(s)	110, 241, 358
Alw26I	GTCTC	2 cut(s)	321, 372
Aor13HI	TCCGGA	1 cut(s)	251
AoxI	GGCC	2 cut(s)	213, 217
ApoI	RAATTY	1 cut(s)	43
AspLEI	GCGC	3 cut(s)	100, 192, 463
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	2 cut(s)	221, 247
AvaII	GGWCC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	358
Bbv12I	GWGCWC	3 cut(s)	110, 241, 358
BccI	CCATC	3 cut(s)	223, 326, 460
BceAI	ACGGC	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	221, 247
BcoDI	GTCTC	2 cut(s)	321, 372
BfaI	CTAG	1 cut(s)	387
BfoI	RGCGCY	3 cut(s)	101, 193, 464
BisI	GCNGC	2 cut(s)	82, 264
BlsI	GCNGC	2 cut(s)	83, 265
Bme1390I	CCNGG	2 cut(s)	221, 247
Bme18I	GGWCC	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	99, 250
BmrFI	CCNGG	2 cut(s)	221, 247
BmsI	GCATC	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	221, 247
BsaAI	YACGTR	1 cut(s)	169
BsaHI	GRCGYC	3 cut(s)	24, 98, 179
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	2 cut(s)	67, 251
Bse118I	RCCGGY	4 cut(s)	94, 100, 181, 215
Bse3DI	GCAATG	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	25, 337
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	3 cut(s)	254, 332, 399
BseX3I	CGGCCG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	215, 219
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	3 cut(s)	110, 241, 358
BsiSI	CCGG	8 cut(s)	68, 95, 101, 182, 216, 220, 246, 252
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	321, 372
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	215, 219
Bso31I	GGTCTC	1 cut(s)	321
Bsp1286I	GDGCHC	3 cut(s)	110, 241, 358
Bsp13I	TCCGGA	1 cut(s)	251
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	81, 263
BspANI	GGCC	2 cut(s)	215, 219
BspCNI	CTCAG	3 cut(s)	253, 331, 400
BspEI	TCCGGA	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	99, 250
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	321
BsrBI	CCGCTC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	37
BsrFI	RCCGGY	4 cut(s)	94, 100, 181, 215
BssAI	RCCGGY	4 cut(s)	94, 100, 181, 215
BssECI	CCNNGG	1 cut(s)	210
BssNI	GRCGYC	3 cut(s)	24, 98, 179
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	343
BstACI	GRCGYC	3 cut(s)	24, 98, 179
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	5 cut(s)	79, 96, 102, 106, 217
BstDEI	CTNAG	4 cut(s)	240, 300, 318, 408
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	25, 337
BstFNI	CGCG	1 cut(s)	197
BstH2I	RGCGCY	3 cut(s)	101, 193, 464
BstHHI	GCGC	3 cut(s)	100, 192, 463
BstMAI	GTCTC	2 cut(s)	321, 372
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 440
BstSCI	CCNGG	2 cut(s)	219, 245
BstUI	CGCG	1 cut(s)	197
BstZI	CGGCCG	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	215, 219
BtgI	CCRYGG	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	25, 337
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	5 cut(s)	79, 96, 102, 106, 217
CfoI	GCGC	3 cut(s)	100, 192, 463
Cfr10I	RCCGGY	4 cut(s)	94, 100, 181, 215
Cfr13I	GGNCC	1 cut(s)	249
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	211
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	240, 300, 318, 408
DinI	GGCGCC	1 cut(s)	99
EaeI	YGGCCR	2 cut(s)	213, 217
EagI	CGGCCG	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	356
EclXI	CGGCCG	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	358
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	214
FaiI	YATR	3 cut(s)	41, 212, 453
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	82, 264
FokI	GGATG	2 cut(s)	32, 344
FriOI	GRGCYC	1 cut(s)	358
FseI	GGCCGGCC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	82, 264
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	3 cut(s)	99, 191, 462
GluI	GCNGC	2 cut(s)	82, 264
HaeII	RGCGCY	3 cut(s)	101, 193, 464
HaeIII	GGCC	2 cut(s)	215, 219
HapII	CCGG	8 cut(s)	68, 95, 101, 182, 216, 220, 246, 252
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	3 cut(s)	100, 192, 463
Hin1I	GRCGYC	3 cut(s)	24, 98, 179
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	3 cut(s)	98, 190, 461
HinP1I	GCGC	3 cut(s)	98, 190, 461
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	8 cut(s)	68, 95, 101, 182, 216, 220, 246, 252
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	6 cut(s)	204, 243, 321, 372, 393, 426
Hpy188III	TCNNGA	2 cut(s)	154, 252
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	3 cut(s)	29, 181, 376
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	3 cut(s)	24, 90, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 440
HpyF3I	CTNAG	4 cut(s)	240, 300, 318, 408
HpySE526I	ACGT	3 cut(s)	24, 90, 168
Hsp92I	GRCGYC	3 cut(s)	24, 98, 179
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	3 cut(s)	98, 190, 461
KasI	GGCGCC	1 cut(s)	97
Kpn2I	TCCGGA	1 cut(s)	251
KroI	GCCGGC	3 cut(s)	94, 100, 215
KroNI	GCCGGC	3 cut(s)	96, 102, 217
LmnI	GCTCC	1 cut(s)	458
LpnPI	CCDG	9 cut(s)	81, 108, 114, 195, 229, 233, 259, 265, 364
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	3 cut(s)	24, 90, 168
MbiI	CCGCTC	1 cut(s)	81
MhlI	GDGCHC	3 cut(s)	110, 241, 358
MluCI	AATT	1 cut(s)	43
Mly113I	GGCGCC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	317, 395
MnlI	CCTC	8 cut(s)	3, 7, 52, 67, 79, 150, 306, 394
MreI	CGCCGGCG	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	251
MroNI	GCCGGC	3 cut(s)	94, 100, 215
MspI	CCGG	8 cut(s)	68, 95, 101, 182, 216, 220, 246, 252
MspR9I	CCNGG	2 cut(s)	221, 247
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	187, 440
NaeI	GCCGGC	3 cut(s)	96, 102, 217
NarI	GGCGCC	1 cut(s)	98
NciI	CCSGG	2 cut(s)	221, 247
NcoI	CCATGG	1 cut(s)	210
NgoMIV	GCCGGC	3 cut(s)	94, 100, 215
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	99, 250
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	3 cut(s)	96, 102, 217
PfeI	GAWTC	1 cut(s)	199
PflFI	GACNNNGTC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	83, 265
PluTI	GGCGCC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	99, 250
PspPI	GGNCC	1 cut(s)	249
PsyI	GACNNNGTC	1 cut(s)	247
RigI	GGCCGGCC	1 cut(s)	219
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	358
SatI	GCNGC	2 cut(s)	82, 264
Sau96I	GGNCC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	221, 247
SduI	GDGCHC	3 cut(s)	110, 241, 358
SetI	ASST	8 cut(s)	27, 93, 161, 167, 171, 317, 358, 409
SfaNI	GCATC	1 cut(s)	40
SfoI	GGCGCC	1 cut(s)	99
SgrAI	CRCCGGYG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	81, 263
SspDI	GGCGCC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	219, 245
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	3 cut(s)	27, 93, 171
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	43
TauI	GCSGC	2 cut(s)	84, 266
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	292
TspRI	CASTG	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	43
XspI	CTAG	1 cut(s)	387
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.