Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Reverse (-)

2627149 .. 2630661

Gene Structure 3513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1034300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1875 bp

ATGACAATGCCTTGGTCCGATTCCTTCACCGAGTCAACTCGGAACCCGACTCGCCGAACTCTGCCCAAATATATACCTCGGCATCTCCGAAACAGTGAAGGCGGCGGCGGGTCGTACGGTTACGGCTACGCGCCCCCAACCGAGTCGGCCCAGTACGGCTTTCGGCAAAGCTACGCTGGTGGTCCAGGAAGGCAAGCCGGCCGGAACGGTCCGGGTCGCGGTGGCGGAGGACGAGGTCGCGGACGTGGTGGCGCTCGCTTTTGGGCTCAAACGCCCCCAAACCCGACCCCAGACCCAAACCCGTTTGATAATGTCTCTGAGGAATTTGATCAGCTCAAAGTCACTGAGGACGAAGGCGATGGAAATGGCGGTATCAATTTCGACGCCTACGAAGACATCCCGGTGGAGGCGAGCGGCGAGGACATTCCGCCGCCGGTGGACACGTTTGTCGAGATCGATTTGGCCGAATGCTTGAACGAAAACATCAAGCGGTGCAAGTACGTGAAGCCCACGCCGATTCAGCGCCACGCTATTCCGATAGCCATGGCTGGCCGCGACTTGATGGCCTGTGCTCAGACTGGGTCCGGCAAAACGGCTGCGTTTTGCTTCCCCATTATCAGTGGGGTCTTGAACAACGGTGTGGGGTTGTCGCCGGCTCGCGGCGTGGATCGCGGCGTGTGCCCCTCCGCCCTCATTTTGTCTCCGACGAGAGAGCTGGCTGGTCAGATTCATGAGGAAGCTAAGAAATTTGGTTATCAGAGTGGGGTGAAGATTGTTGTTGCTTATGGTGGAGCTCCAATTTCTCAGCAGTTACGTATTCTGGATAGAGGTTGTGATATCCTTGTTGCAACTCCCGGTCGCTTGGTGGACATGATTGAGAGGTCACGAGTTTCGCTGAGTAATATCAAGTATTTGGCATTAGATGAGGCTGATAGGATGTTGGACATGGGTTTTGAGCCTCAGATAAGGAGGATTGTCGAACAAATGGACATGCCTCGCTCTGGTGCAAGACAAACGTTGCTTTTCAGTGCTACGTTCCCTGATGAAATACAGAGGCTCGCTGCAGATTTTCTGTCAAACTACATTTTTCTATCTGTTGGAAGAGTTGGATCAAGCACAGGACTCATTACACAAAGAGTTGAACTCGTTGAGGATATGGACAAAAGAAACCATTTGATGAAGCTGCTTAGCCAGCAGGCAAATGGAGCTCATGGAAAGGTTGCTTTAACCTTGGTGTTTGTGGAGACCAAGAGAAGTGCAGATTCTTTAGAAAACTGGTTACGCATGAATCGTTTTCCAGCTATAGCTATACATGGTGATAAAGTGCAAATGGAGAGGGAGCAAGCTTTGAGATTGTTCAAGTGTGGCAAGACCCCAATATTGGTGGCGACAGATGTTGCTTCACGAGGGCTAGACATCCCTCATGTTTCCCATGTCATCAACTTTGATCTGCCAAAAAGCATAGATGACTACGTTCACCGGATTGGACGAACAGGGCGTGCTGGAAATTCAGGTCTTGCAACTGCTTTCTTCAATGCCAAAAACCAGCCACTCGCCAAGGGACTGATCGAACTGATGCAGGAGTCAAACCAGGAGGTTCCAAGCTGGCTGAACGAATATGCTGAGGGCGAATCACAGACATACAGCAGTGGTGGTGGTGGTGGTGGCCGGAACAGGAGGTCTGGTGGCAGTAAGTTTGGTGGATATGACTATCGTAGGGACTCTCAATATGCGCATGACGGTTATTACGGTCCAAGCAGCTATGGCTATGGAGATTATTCTGGGGGCATGTCTGCTGCTCCCTATAACGATGCTGCTGCTGTTCCAAACGGCTACGGAAACTATGAAACTATTGTTGCTGGTGGGTGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

625

Amino Acids

67.81

Weight (kDa)

6.41

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	171 - 352	1.8e-50	DEAD/DEAH box helicase
Helicase_C	PF00271	388 - 502	2.7e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
Acc16I	TGCGCA	1 cut(s)	1734
AccBSI	CCGCTC	1 cut(s)	414
AccII	CGCG	6 cut(s)	131, 219, 240, 555, 660, 672
AclI	AACGTT	1 cut(s)	1016
AclWI	GGATC	2 cut(s)	675, 1117
AcoI	YGGCCR	4 cut(s)	199, 462, 550, 1666
AcsI	RAATTY	3 cut(s)	323, 746, 1507
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	3 cut(s)	116, 155, 500
AfiI	CCNNNNNNNGG	5 cut(s)	218, 406, 659, 1001, 1381
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	5 cut(s)	475, 631, 1142, 1360, 1534
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	2 cut(s)	184, 1590
Alw21I	GWGCWC	3 cut(s)	574, 796, 1210
Alw26I	GTCTC	3 cut(s)	319, 705, 1238
AlwI	GGATC	2 cut(s)	675, 1117
AoxI	GGCC	6 cut(s)	147, 199, 462, 550, 564, 1666
ApeKI	GCWGC	7 cut(s)	596, 1061, 1183, 1758, 1796, 1814, 1817
ApoI	RAATTY	3 cut(s)	323, 746, 1507
ArsI	GACNNNNNNTTYG	2 cut(s)	935, 967
AspLEI	GCGC	4 cut(s)	133, 254, 525, 1735
AspS9I	GGNCC	6 cut(s)	15, 148, 182, 209, 582, 1751
AsuC2I	CCSGG	3 cut(s)	213, 401, 855
AsuHPI	GGTGA	4 cut(s)	19, 778, 1328, 1469
AvaII	GGWCC	5 cut(s)	15, 182, 209, 582, 1751
BaeGI	GKGCMC	1 cut(s)	683
BanII	GRGCYC	3 cut(s)	268, 796, 1210
BauI	CACGAG	2 cut(s)	885, 1404
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	3 cut(s)	574, 796, 1210
BbvCI	CCTCAGC	1 cut(s)	1623
BbvI	GCAGC	7 cut(s)	583, 1048, 1170, 1770, 1783, 1801, 1804
BccI	CCATC	2 cut(s)	353, 556
BceAI	ACGGC	4 cut(s)	139, 172, 609, 1846
BcgI	CGANNNNNNTGC	2 cut(s)	1799, 1833
BciT130I	CCWGG	2 cut(s)	186, 1592
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	3 cut(s)	213, 401, 855
BcoDI	GTCTC	3 cut(s)	319, 705, 1238
BfaI	CTAG	1 cut(s)	1412
BfmI	CTRYAG	2 cut(s)	1062, 1302
BfoI	RGCGCY	2 cut(s)	255, 526
BlpI	GCTNAGC	1 cut(s)	1187
Bme1390I	CCNGG	5 cut(s)	186, 213, 401, 855, 1592
Bme18I	GGWCC	5 cut(s)	15, 182, 209, 582, 1751
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	6 cut(s)	15, 148, 182, 209, 582, 1751
BmiI	GGNNCC	3 cut(s)	44, 583, 1599
BmrFI	CCNGG	5 cut(s)	186, 213, 401, 855, 1592
BmrI	ACTGGG	2 cut(s)	145, 588
BmsI	GCATC	3 cut(s)	91, 1566, 1801
BmuI	ACTGGG	2 cut(s)	145, 588
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	1128, 1160
Bpu10I	CCTNAGC	1 cut(s)	1623
Bpu1102I	GCTNAGC	1 cut(s)	1187
BpuMI	CCSGG	3 cut(s)	213, 401, 855
Bsa29I	ATCGAT	1 cut(s)	456
BsaAI	YACGTR	2 cut(s)	502, 815
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	1238
BsaJI	CCNNGG	5 cut(s)	11, 77, 543, 1230, 1557
BsaWI	WCCGGW	1 cut(s)	1479
BsaXI	ACNNNNNCTCC	2 cut(s)	1669, 1699
Bsc4I	CCNNNNNNNGG	5 cut(s)	218, 406, 659, 1001, 1381
Bse118I	RCCGGY	3 cut(s)	197, 433, 652
Bse1I	ACTGG	3 cut(s)	151, 583, 1280
BseBI	CCWGG	2 cut(s)	186, 1592
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	5 cut(s)	11, 77, 543, 1230, 1557
BseGI	GGATG	3 cut(s)	396, 942, 1416
BseLI	CCNNNNNNNGG	5 cut(s)	218, 406, 659, 1001, 1381
BseMII	CTCAG	7 cut(s)	309, 336, 587, 818, 887, 974, 1614
BseNI	ACTGG	3 cut(s)	151, 583, 1280
BseSI	GKGCMC	1 cut(s)	683
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	7 cut(s)	583, 1048, 1170, 1770, 1783, 1801, 1804
BsgI	GTGCAG	1 cut(s)	1278
Bsh1236I	CGCG	6 cut(s)	131, 219, 240, 555, 660, 672
Bsh1285I	CGRYCG	2 cut(s)	202, 859
BshFI	GGCC	6 cut(s)	149, 201, 464, 552, 566, 1668
BshVI	ATCGAT	1 cut(s)	456
BsiEI	CGRYCG	2 cut(s)	202, 859
BsiHKAI	GWGCWC	3 cut(s)	574, 796, 1210
BsiWI	CGTACG	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	1575, 1733
BslI	CCNNNNNNNGG	5 cut(s)	218, 406, 659, 1001, 1381
BsmAI	GTCTC	3 cut(s)	319, 705, 1238
BsmFI	GGGAC	2 cut(s)	1575, 1733
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	6 cut(s)	149, 201, 464, 552, 566, 1668
Bso31I	GGTCTC	1 cut(s)	1238
Bsp1286I	GDGCHC	5 cut(s)	268, 574, 683, 796, 1210
Bsp143I	GATC	6 cut(s)	328, 453, 667, 1109, 1447, 1566
Bsp1720I	GCTNAGC	1 cut(s)	1187
Bsp19I	CCATGG	1 cut(s)	543
BspANI	GGCC	6 cut(s)	149, 201, 464, 552, 566, 1668
BspCNI	CTCAG	7 cut(s)	310, 337, 586, 817, 888, 973, 1615
BspDI	ATCGAT	1 cut(s)	456
BspFNI	CGCG	6 cut(s)	131, 219, 240, 555, 660, 672
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	3 cut(s)	44, 583, 1599
BspMAI	CTGCAG	1 cut(s)	1066
BspPI	GGATC	2 cut(s)	675, 1117
BspTNI	GGTCTC	1 cut(s)	1238
BsrBI	CCGCTC	1 cut(s)	414
BsrFI	RCCGGY	3 cut(s)	197, 433, 652
BsrI	ACTGG	3 cut(s)	151, 583, 1280
BssAI	RCCGGY	3 cut(s)	197, 433, 652
BssECI	CCNNGG	5 cut(s)	11, 77, 543, 1230, 1557
BssMI	GATC	6 cut(s)	328, 453, 667, 1109, 1447, 1566
BssNI	GRCGYC	1 cut(s)	384
BssSI	CACGAG	2 cut(s)	885, 1404
BssT1I	CCWWGG	4 cut(s)	11, 543, 1230, 1557
Bst2BI	CACGAG	2 cut(s)	885, 1404
Bst2UI	CCWGG	2 cut(s)	186, 1592
Bst4CI	ACNGT	6 cut(s)	95, 119, 209, 638, 1742, 1751
Bst6I	CTCTTC	1 cut(s)	1096
BstACI	GRCGYC	1 cut(s)	384
BstBAI	YACGTR	2 cut(s)	502, 815
BstDEI	CTNAG	9 cut(s)	318, 345, 573, 741, 804, 896, 960, 1187, 1623
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	396, 942, 1416
BstFNI	CGCG	6 cut(s)	131, 219, 240, 555, 660, 672
BstH2I	RGCGCY	2 cut(s)	255, 526
BstHHI	GCGC	4 cut(s)	133, 254, 525, 1735
BstKTI	GATC	6 cut(s)	331, 456, 670, 1112, 1450, 1569
BstMAI	GTCTC	3 cut(s)	319, 705, 1238
BstMBI	GATC	6 cut(s)	328, 453, 667, 1109, 1447, 1566
BstMCI	CGRYCG	2 cut(s)	202, 859
BstMWI	GCNNNNNNNGC	6 cut(s)	520, 669, 678, 1192, 1205, 1764
BstNI	CCWGG	2 cut(s)	186, 1592
BstNSI	RCATGY	2 cut(s)	994, 1792
BstSCI	CCNGG	5 cut(s)	184, 211, 399, 853, 1590
BstSFI	CTRYAG	2 cut(s)	1062, 1302
BstSLI	GKGCMC	1 cut(s)	683
BstSNI	TACGTA	1 cut(s)	815
BstUI	CGCG	6 cut(s)	131, 219, 240, 555, 660, 672
BstV1I	GCAGC	7 cut(s)	583, 1048, 1170, 1770, 1783, 1801, 1804
BstV2I	GAAGAC	1 cut(s)	399
BstZI	CGGCCG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	6 cut(s)	149, 201, 464, 552, 566, 1668
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	543
BtgZI	GCGATG	1 cut(s)	372
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	396, 942, 1416
BtsI	GCAGTG	1 cut(s)	1654
BtsIMutI	CAGTG	5 cut(s)	100, 342, 625, 1033, 1654
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	4 cut(s)	133, 254, 525, 1735
Cfr10I	RCCGGY	3 cut(s)	197, 433, 652
Cfr13I	GGNCC	6 cut(s)	15, 148, 182, 209, 582, 1751
ClaI	ATCGAT	1 cut(s)	456
CpoI	CGGWCCG	1 cut(s)	209
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	115, 154, 499
CspCI	CAANNNNNGTGG	2 cut(s)	1365, 1400
CspI	CGGWCCG	1 cut(s)	209
CviQI	GTAC	3 cut(s)	115, 154, 499
DdeI	CTNAG	9 cut(s)	318, 345, 573, 741, 804, 896, 960, 1187, 1623
DpnI	GATC	6 cut(s)	330, 455, 669, 1111, 1449, 1568
DpnII	GATC	6 cut(s)	328, 453, 667, 1109, 1447, 1566
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	4 cut(s)	199, 462, 550, 1666
EagI	CGGCCG	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	1096
EarI	CTCTTC	1 cut(s)	1096
EciI	GGCGGA	3 cut(s)	240, 417, 676
Ecl136II	GAGCTC	2 cut(s)	794, 1208
EclXI	CGGCCG	1 cut(s)	199
Eco105I	TACGTA	1 cut(s)	815
Eco130I	CCWWGG	4 cut(s)	11, 543, 1230, 1557
Eco24I	GRGCYC	3 cut(s)	268, 796, 1210
Eco31I	GGTCTC	1 cut(s)	1238
Eco32I	GATATC	1 cut(s)	838
Eco47I	GGWCC	5 cut(s)	15, 182, 209, 582, 1751
Eco52I	CGGCCG	1 cut(s)	199
Eco53kI	GAGCTC	2 cut(s)	794, 1208
EcoICRI	GAGCTC	2 cut(s)	794, 1208
EcoRII	CCWGG	2 cut(s)	184, 1590
EcoRV	GATATC	1 cut(s)	838
EcoT14I	CCWWGG	4 cut(s)	11, 543, 1230, 1557
EcoT38I	GRGCYC	3 cut(s)	268, 796, 1210
ErhI	CCWWGG	4 cut(s)	11, 543, 1230, 1557
FaqI	GGGAC	2 cut(s)	1575, 1733
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	328
FokI	GGATG	3 cut(s)	383, 949, 1403
FriOI	GRGCYC	3 cut(s)	268, 796, 1210
FspAI	RTGCGCAY	1 cut(s)	1734
FspBI	CTAG	1 cut(s)	1412
FspI	TGCGCA	1 cut(s)	1734
GlaI	GCGC	4 cut(s)	132, 253, 524, 1734
HaeII	RGCGCY	2 cut(s)	255, 526
HaeIII	GGCC	6 cut(s)	149, 201, 464, 552, 566, 1668
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	4 cut(s)	133, 254, 525, 1735
Hin1I	GRCGYC	1 cut(s)	384
Hin6I	GCGC	4 cut(s)	131, 252, 523, 1733
HinP1I	GCGC	4 cut(s)	131, 252, 523, 1733
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	1344
HphI	GGTGA	4 cut(s)	19, 778, 1328, 1469
Hpy166II	GTNNAC	4 cut(s)	36, 439, 868, 1477
Hpy188III	TCNNGA	6 cut(s)	451, 628, 731, 821, 885, 1404
Hpy8I	GTNNAC	4 cut(s)	36, 439, 868, 1477
Hpy99I	CGWCG	2 cut(s)	386, 709
HpyAV	CCTTC	4 cut(s)	34, 92, 183, 347
HpyCH4III	ACNGT	6 cut(s)	95, 119, 209, 638, 1742, 1751
HpyCH4IV	ACGT	7 cut(s)	244, 443, 501, 814, 1016, 1034, 1473
HpyCH4V	TGCA	8 cut(s)	495, 848, 1007, 1064, 1259, 1327, 1520, 1579
HpyF10VI	GCNNNNNNNGC	6 cut(s)	520, 669, 678, 1192, 1205, 1764
HpyF3I	CTNAG	9 cut(s)	318, 345, 573, 741, 804, 896, 960, 1187, 1623
HpySE526I	ACGT	7 cut(s)	244, 443, 501, 814, 1016, 1034, 1473
Hsp92I	GRCGYC	1 cut(s)	384
HspAI	GCGC	4 cut(s)	131, 252, 523, 1733
KroI	GCCGGC	2 cut(s)	197, 652
KroNI	GCCGGC	2 cut(s)	199, 654
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	6 cut(s)	328, 453, 667, 1109, 1447, 1566
LmnI	GCTCC	5 cut(s)	791, 799, 1205, 1339, 1804
Lsp1109I	GCAGC	7 cut(s)	583, 1048, 1170, 1770, 1783, 1801, 1804
LweI	GCATC	3 cut(s)	91, 1566, 1801
MaeI	CTAG	1 cut(s)	1412
MaeII	ACGT	7 cut(s)	244, 443, 501, 814, 1016, 1034, 1473
MaeIII	GTNAC	5 cut(s)	119, 340, 810, 882, 1278
MalI	GATC	6 cut(s)	330, 455, 669, 1111, 1449, 1568
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	6 cut(s)	328, 453, 667, 1109, 1447, 1566
MboII	GAAGA	4 cut(s)	404, 781, 1113, 1522
MhlI	GDGCHC	5 cut(s)	268, 574, 683, 796, 1210
MluCI	AATT	5 cut(s)	323, 376, 746, 798, 1507
MlyI	GAGTC	6 cut(s)	41, 43, 152, 1116, 1592, 1715
MmeI	TCCRAC	4 cut(s)	728, 921, 1078, 1087
MroNI	GCCGGC	2 cut(s)	197, 652
MseI	TTAA	1 cut(s)	1226
MslI	CAYNNNNRTG	1 cut(s)	401
MspR9I	CCNGG	5 cut(s)	186, 213, 401, 855, 1592
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	2 cut(s)	186, 1592
MvnI	CGCG	6 cut(s)	131, 219, 240, 555, 660, 672
MwoI	GCNNNNNNNGC	6 cut(s)	520, 669, 678, 1192, 1205, 1764
NaeI	GCCGGC	2 cut(s)	199, 654
NciI	CCSGG	3 cut(s)	213, 401, 855
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	6 cut(s)	328, 453, 667, 1109, 1447, 1566
NgoMIV	GCCGGC	2 cut(s)	197, 652
NlaIV	GGNNCC	3 cut(s)	44, 583, 1599
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	2 cut(s)	340, 882
NsbI	TGCGCA	1 cut(s)	1734
NspI	RCATGY	2 cut(s)	994, 1792
PagI	TCATGA	1 cut(s)	730
PcsI	WCGNNNNNNNCGW	5 cut(s)	85, 387, 462, 1288, 1495
PctI	GAATGC	1 cut(s)	473
PdiI	GCCGGC	2 cut(s)	199, 654
PfeI	GAWTC	6 cut(s)	20, 517, 727, 1262, 1288, 1631
Pfl23II	CGTACG	1 cut(s)	114
PflFI	GACNNNGTC	2 cut(s)	234, 580
PfoI	TCCNGGA	1 cut(s)	184
PleI	GAGTC	6 cut(s)	40, 43, 151, 1116, 1591, 1715
PpsI	GAGTC	6 cut(s)	40, 43, 151, 1116, 1591, 1715
Ppu21I	YACGTR	2 cut(s)	502, 815
Psp124BI	GAGCTC	2 cut(s)	796, 1210
Psp1406I	AACGTT	1 cut(s)	1016
Psp6I	CCWGG	2 cut(s)	184, 1590
PspGI	CCWGG	2 cut(s)	184, 1590
PspLI	CGTACG	1 cut(s)	114
PspN4I	GGNNCC	3 cut(s)	44, 583, 1599
PspPI	GGNCC	6 cut(s)	15, 148, 182, 209, 582, 1751
PstI	CTGCAG	1 cut(s)	1066
PsyI	GACNNNGTC	2 cut(s)	234, 580
RsaI	GTAC	3 cut(s)	116, 155, 500
RsaNI	GTAC	3 cut(s)	115, 154, 499
RseI	CAYNNNNRTG	1 cut(s)	401
Rsr2I	CGGWCCG	1 cut(s)	209
RsrII	CGGWCCG	1 cut(s)	209
SacI	GAGCTC	2 cut(s)	796, 1210
SaqAI	TTAA	1 cut(s)	1226
Sau3AI	GATC	6 cut(s)	328, 453, 667, 1109, 1447, 1566
Sau96I	GGNCC	6 cut(s)	15, 148, 182, 209, 582, 1751
SchI	GAGTC	6 cut(s)	41, 43, 152, 1116, 1592, 1715
ScrFI	CCNGG	5 cut(s)	186, 213, 401, 855, 1592
SduI	GDGCHC	5 cut(s)	268, 574, 683, 796, 1210
SfaNI	GCATC	3 cut(s)	91, 1566, 1801
SfcI	CTRYAG	2 cut(s)	1062, 1302
SgrAI	CRCCGGYG	1 cut(s)	433
SinI	GGWCC	5 cut(s)	15, 182, 209, 582, 1751
SmiMI	CAYNNNNRTG	1 cut(s)	401
SnaBI	TACGTA	1 cut(s)	815
Sse9I	AATT	5 cut(s)	323, 376, 746, 798, 1507
SspI	AATATT	1 cut(s)	1380
SspMI	CTAG	1 cut(s)	1412
SstI	GAGCTC	2 cut(s)	796, 1210
StyD4I	CCNGG	5 cut(s)	184, 211, 399, 853, 1590
StyI	CCWWGG	4 cut(s)	11, 543, 1230, 1557
TaaI	ACNGT	6 cut(s)	95, 119, 209, 638, 1742, 1751
TaiI	ACGT	7 cut(s)	247, 446, 504, 817, 1019, 1037, 1476
TaqI	TCGA	5 cut(s)	381, 450, 456, 978, 1569
TasI	AATT	5 cut(s)	323, 376, 746, 798, 1507
TauI	GCSGC	7 cut(s)	105, 108, 417, 433, 555, 663, 675
TfiI	GAWTC	6 cut(s)	20, 517, 727, 1262, 1288, 1631
Tru1I	TTAA	1 cut(s)	1226
Tru9I	TTAA	1 cut(s)	1226
TscAI	CASTG	5 cut(s)	100, 349, 625, 1033, 1654
TseFI	GTSAC	2 cut(s)	340, 882
TseI	GCWGC	7 cut(s)	596, 1061, 1183, 1758, 1796, 1814, 1817
Tsp45I	GTSAC	2 cut(s)	340, 882
TspDTI	ATGAA	5 cut(s)	719, 1059, 1193, 1301, 1860
TspGWI	ACGGA	1 cut(s)	1851
TspRI	CASTG	5 cut(s)	100, 349, 625, 1033, 1654
Tth111I	GACNNNGTC	2 cut(s)	234, 580
VpaK11BI	GGWCC	5 cut(s)	15, 182, 209, 582, 1751
XapI	RAATTY	3 cut(s)	323, 746, 1507
XceI	RCATGY	2 cut(s)	994, 1792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1199
XspI	CTAG	1 cut(s)	1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.