Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

5958611 .. 5975954

Gene Structure 17344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGATTGAGAGATCACGAGTTTCCCTCAAAATGATCAAGTATTTAGCAGTAGATGATAGGATGTTGGACATAGGTTTTGAACCTCAGATATCAAAGATTGTTCGACAAATGGACATGCCTCCCCCAGGTGCAAGACAAACTCTGCTTTTCAGTGCTACATTCCCTAATGAGATACAGAGGCTTGCTTCAGAACTCCTCCAAAAATACATATTTTCGACTATTGGAATAGTTGGGAATGGGAACAAGATAAGGAATTTATGTTGTCTTCTTCTTAAGAACCAGAGGGAAATTGAAACTCATGGAAAGGGGGACAAAGGGATAACAAATTTGAAATCAGCTGATGTAGAGGTAGCTCCTGAGAATGCTTTTGGTGAGACTATTATTGAGAGTCAAGAGGAGTTCCTTCAAAAAATCTCTACTCTCAAGGATTGCATCCGGGAAGAGATGGCTAAAGGGACTACAAATATTGCATTCATGACTCGGACGGGGATTACCGCTGCTGTAGATTCCAGAACATGGCATGGCCAATTTATAGCCTATGGAAATTCAGTCCATTCATATAGCAGGAAATCAACCTTATGTGGAACTGTGGAAGGGATGAGTCCACCAGAAGAAGTACTAGAAGAACCTTCATTTTGGACATGTGGAGCGATATTGGGATCTGGCTCTTCACAAGCTTATCCAGTTATGATACGAGGGCCATATGGAGGAGAGATTGATTCAGCAAATTGTGTAGCAGTTAAGAGAGATTTCTACGCTTTTCGTGTGGTATTCAAGACTGAAGAAGATGCTACAATAGCAAATGAAGGTATTATGACCCATCAGTTGCCTGTGGAACTTCGACAGATGCCTCGACCTATGGAAAACAGTTGGTTTCGATCGTTTCGGTATTCTAAATGTGCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

302

Amino Acids

33.83

Weight (kDa)

6.47

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	6 - 60	2.3e-07	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	516
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	3 cut(s)	253, 325, 544
AcuI	CTGAAG	2 cut(s)	171, 801
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	125, 516, 707
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	5 cut(s)	80, 293, 331, 407, 775
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	3 cut(s)	338, 353, 677
AluI	AGCT	3 cut(s)	338, 353, 677
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	667
AoxI	GGCC	2 cut(s)	523, 698
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	3 cut(s)	253, 325, 544
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	525
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	439, 828
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	620, 907
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	126, 437
BmgT120I	GGNCC	1 cut(s)	698
BmrFI	CCNGG	2 cut(s)	126, 437
BmsI	GCATC	3 cut(s)	441, 778, 837
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 516, 707
Bse1I	ACTGG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	3 cut(s)	66, 432, 603
BseLI	CCNNNNNNNGG	3 cut(s)	125, 516, 707
BseMII	CTCAG	2 cut(s)	98, 348
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	3 cut(s)	185, 410, 723
BseXI	GCAGC	1 cut(s)	484
Bsh1285I	CGRYCG	1 cut(s)	881
BshFI	GGCC	2 cut(s)	525, 700
BsiEI	CGRYCG	1 cut(s)	881
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	323, 469
BslI	CCNNNNNNNGG	3 cut(s)	125, 516, 707
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	323, 469
BsmI	GAATGC	2 cut(s)	367, 470
BsnI	GGCC	2 cut(s)	525, 700
Bsp143I	GATC	4 cut(s)	11, 33, 659, 878
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	525, 700
BspCNI	CTCAG	2 cut(s)	97, 349
BspHI	TCATGA	1 cut(s)	474
BspPI	GGATC	1 cut(s)	667
BspQI	GCTCTTC	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	11, 33, 659, 878
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	589, 869
Bst6I	CTCTTC	2 cut(s)	435, 673
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	84, 357
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	66, 432, 603
BstKTI	GATC	4 cut(s)	14, 36, 662, 881
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	4 cut(s)	11, 33, 659, 878
BstMCI	CGRYCG	1 cut(s)	881
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	2 cut(s)	118, 645
BstSCI	CCNGG	2 cut(s)	124, 435
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	525, 700
BtsCI	GGATG	3 cut(s)	66, 432, 603
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	6 cut(s)	115, 299, 475, 516, 521, 642
CviJI	RGCY	9 cut(s)	181, 338, 353, 449, 525, 536, 666, 677, 700
CviKI_1	RGCY	9 cut(s)	181, 338, 353, 449, 525, 536, 666, 677, 700
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	2 cut(s)	84, 357
DpnI	GATC	4 cut(s)	13, 35, 661, 880
DpnII	GATC	4 cut(s)	11, 33, 659, 878
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	2 cut(s)	435, 673
EarI	CTCTTC	2 cut(s)	435, 673
Eco32I	GATATC	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	171, 801
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	90
FaeI	CATG	6 cut(s)	118, 302, 478, 519, 524, 645
FaqI	GGGAC	2 cut(s)	323, 469
FatI	CATG	6 cut(s)	114, 298, 474, 515, 520, 641
FauNDI	CATATG	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	3 cut(s)	73, 419, 610
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	2 cut(s)	620, 907
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	525, 700
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	6 cut(s)	118, 302, 478, 519, 524, 645
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	5 cut(s)	388, 478, 506, 601, 719
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	3 cut(s)	87, 190, 483
Hpy188III	TCNNGA	6 cut(s)	15, 356, 392, 475, 510, 775
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	4 cut(s)	413, 587, 639, 800
HpyCH4III	ACNGT	2 cut(s)	589, 869
HpyCH4V	TGCA	3 cut(s)	131, 432, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	2 cut(s)	84, 357
Hsp92II	CATG	6 cut(s)	118, 302, 478, 519, 524, 645
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	11, 33, 659, 878
LguI	GCTCTTC	1 cut(s)	673
LmnI	GCTCC	2 cut(s)	358, 647
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	3 cut(s)	441, 778, 837
MaeI	CTAG	2 cut(s)	620, 907
MalI	GATC	4 cut(s)	13, 35, 661, 880
MboI	GATC	4 cut(s)	11, 33, 659, 878
MboII	GAAGA	8 cut(s)	257, 260, 452, 623, 635, 660, 794, 797
MflI	RGATCY	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	6 cut(s)	253, 288, 325, 527, 544, 727
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	3 cut(s)	397, 472, 610
MmeI	TCCRAC	1 cut(s)	45
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	2 cut(s)	273, 741
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	338, 497
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	2 cut(s)	126, 437
Mva1269I	GAATGC	2 cut(s)	367, 470
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	797
NciI	CCSGG	1 cut(s)	437
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	4 cut(s)	11, 33, 659, 878
NlaIII	CATG	6 cut(s)	118, 302, 478, 519, 524, 645
NspI	RCATGY	2 cut(s)	118, 645
PagI	TCATGA	1 cut(s)	474
PciI	ACATGT	1 cut(s)	641
PciSI	GCTCTTC	1 cut(s)	673
PctI	GAATGC	2 cut(s)	367, 470
PfeI	GAWTC	2 cut(s)	506, 719
PflMI	CCANNNNNTGG	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	499
Ple19I	CGATCG	1 cut(s)	881
PleI	GAGTC	3 cut(s)	396, 472, 609
PpsI	GAGTC	3 cut(s)	396, 472, 609
PscI	ACATGT	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	659
PvuI	CGATCG	1 cut(s)	881
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	673
SaqAI	TTAA	2 cut(s)	273, 741
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	4 cut(s)	11, 33, 659, 878
Sau96I	GGNCC	1 cut(s)	698
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	3 cut(s)	397, 472, 610
ScrFI	CCNGG	2 cut(s)	126, 437
SfaNI	GCATC	3 cut(s)	441, 778, 837
SfcI	CTRYAG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	272, 422
SmoI	CTYRAG	2 cut(s)	272, 422
Sse9I	AATT	6 cut(s)	253, 288, 325, 527, 544, 727
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	620, 907
StyD4I	CCNGG	2 cut(s)	124, 435
TaaI	ACNGT	2 cut(s)	589, 869
TaqI	TCGA	5 cut(s)	103, 215, 841, 853, 877
TasI	AATT	6 cut(s)	253, 288, 325, 527, 544, 727
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	2 cut(s)	506, 719
Tru1I	TTAA	2 cut(s)	273, 741
Tru9I	TTAA	2 cut(s)	273, 741
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	463, 546, 621, 819
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	516
Vha464I	CTTAAG	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	3 cut(s)	253, 325, 544
XceI	RCATGY	2 cut(s)	118, 645
XspI	CTAG	2 cut(s)	620, 907
ZrmI	AGTACT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.