Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

3064598 .. 3068171

Gene Structure 3574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGCCGGCCGGGACTTGATGGCTTGTGCTCAGACCGGGTCCGGAAAGACGGCGGCTTTTTGCTTCCCCATTATCAGTGGAGTGTTGACTAAGTGTGTGGAGAGGTCTCAGAGTAATGGGGATGGTTGGACTGTGTTTCCCAGAGCTCTCATTTTGTCTCCGACGAGAGAGTTGGCTAGTCAGATATTTGAGGAAGCTGAGAAGTTTGCTTATCAGAGTGGGGCAAAAGTGGCTGTTGTTTATGGTGGAGCGCCGATGGGTCAGCAGCTTCGTGATCTGGAGAGAGGTGTTGACATCCTAGTTGCCACTCCAGGGCGCTTAGTGGACATGATTGAAAGGTCACGAGTTTCACTCAAGATGATCAAATACTTGGCACTAGATGAGGCTGATAGGATGTTGGACATGGGTTTTGAACCTCAAATAAGGAAGATTGTTCAAAGAATGGACATGCCTCCCCCAGGTGCAAGACAAACACTGCTTTTCAGTGCAACATTCCCGCATGAAATACAGAGGCTTGCTGCAGATTTCCTCAAGAACTACATTTTTCTGACTGTTGGGAGAGTTGGGTCAAGCACTGATCTTATAGCACAAAAGGTTGAGTTTGTCAGGGATATGGACAAAATACAGCATTTATGTGGTCTTCTTAAGAACCAGAGGGACAATGAAACTCATGGAAAGCTTGCTTTAACCTTGGTGTTTGTTGAGACCAAGAAAGGAGCAAATCAATTGGAAAACTGGTTGTCCAGGAATGGATTCCCAGCAATAGCAATACATGGTGACAAAGTGCAAATGGAGAGGGAACGAGCTTTGAGATTGTTTAAGTGTGGCACAACTCCAATACTGGTGGCAACAGATGTTGCTTCACGAGGTTTAGATATCCCTCATGTTGCCCATGTCATCAATTTTGACTTCCCAAAAAGCATAGATGATTATGTTCACCGGATTGGTCGGACTGGACGTGCTGGTAAATCTGGTCTTGCAACTGCTTTCTTCAGTGAAAAGAACCAGCCTCTTGCAAAGGCACTAGTGGAGTTAATGAAGGAGTCAAAGCAGGAGGTTCCTAATTGGCTTAATGATTATGCTGAACAGTCATTGTCTTATGGTGGAGATCAGAGCCAAAGGTACAGTAGCAGTAACTTTGGTGGATATGACGTCCGTAGGAGTGAGAATTATTATGGTTCAGGCAGTTATGGTTATGGAGATTCTTCTGTGGGTGCGGCTGCTGCTACTTGTAATGATGTTTCTGGTTCATATGCTACTGGTTCATTTGGCCATGGAGGAAATTATGGGAATTCTTCTGTGGATGAGCCTGCTGCTTCCTACAATGGTTCTTATGGGGGTGAAACTGATGCTGCTGGTACTGCTGGTTCATCGAGCTTTGGAAATTATGAAAATATTGTTGCTGGTGGGTGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

472

Amino Acids

51.31

Weight (kDa)

6.29

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	2 - 171	4.2e-46	DEAD/DEAH box helicase
Helicase_C	PF00271	207 - 322	8.9e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1155
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	3 cut(s)	53, 497, 1217
AcoI	YGGCCR	3 cut(s)	3, 7, 1270
AcsI	RAATTY	1 cut(s)	1291
AcuI	CTGAAG	1 cut(s)	976
AcyI	GRCGYC	1 cut(s)	1152
AfaI	GTAC	2 cut(s)	1124, 1360
AfiI	CCNNNNNNNGG	2 cut(s)	312, 458
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	3 cut(s)	335, 413, 437
AhlI	ACTAGT	1 cut(s)	1024
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	3 cut(s)	310, 457, 743
AluBI	AGCT	6 cut(s)	146, 197, 268, 679, 806, 1377
AluI	AGCT	6 cut(s)	146, 197, 268, 679, 806, 1377
Alw21I	GWGCWC	2 cut(s)	31, 148
Alw26I	GTCTC	3 cut(s)	111, 162, 698
Aor13HI	TCCGGA	1 cut(s)	41
AoxI	GGCC	3 cut(s)	3, 7, 1270
ApeKI	GCWGC	6 cut(s)	265, 518, 1220, 1223, 1313, 1352
ApoI	RAATTY	1 cut(s)	1291
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	1 cut(s)	752
AspLEI	GCGC	2 cut(s)	253, 318
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	2 cut(s)	11, 37
AsuHPI	GGTGA	3 cut(s)	788, 929, 1352
AvaII	GGWCC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	1272
BanII	GRGCYC	1 cut(s)	148
BauI	CACGAG	2 cut(s)	342, 864
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	2 cut(s)	31, 148
BbvI	GCAGC	6 cut(s)	277, 505, 1207, 1210, 1300, 1339
BccI	CCATC	3 cut(s)	13, 116, 250
BceAI	ACGGC	1 cut(s)	66
BciT130I	CCWGG	3 cut(s)	312, 459, 745
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	11, 37
BcoDI	GTCTC	3 cut(s)	111, 162, 698
BcuI	ACTAGT	1 cut(s)	1024
BfaI	CTAG	4 cut(s)	177, 299, 377, 1025
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	2 cut(s)	254, 319
BfrI	CTTAAG	1 cut(s)	644
BisI	GCNGC	8 cut(s)	54, 266, 519, 1218, 1221, 1224, 1314, 1353
BlsI	GCNGC	8 cut(s)	55, 267, 520, 1219, 1222, 1225, 1315, 1354
Bme1390I	CCNGG	5 cut(s)	11, 37, 312, 459, 745
Bme18I	GGWCC	1 cut(s)	39
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	40, 1059
BmrFI	CCNGG	5 cut(s)	11, 37, 312, 459, 745
BmsI	GCATC	1 cut(s)	1339
BpiI	GAAGAC	1 cut(s)	632
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
BpmI	CTGGAG	2 cut(s)	294, 299
BpuEI	CTTGAG	2 cut(s)	338, 515
BpuMI	CCSGG	2 cut(s)	11, 37
BsaHI	GRCGYC	1 cut(s)	1152
BsaI	GGTCTC	2 cut(s)	111, 698
BsaJI	CCNNGG	4 cut(s)	311, 457, 690, 1273
BsaWI	WCCGGW	2 cut(s)	41, 939
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 458
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	4 cut(s)	740, 846, 958, 1264
BseAI	TCCGGA	1 cut(s)	41
BseBI	CCWGG	3 cut(s)	312, 459, 745
BseDI	CCNNGG	4 cut(s)	311, 457, 690, 1273
BseGI	GGATG	4 cut(s)	127, 294, 399, 1309
BseLI	CCNNNNNNNGG	2 cut(s)	312, 458
BseMII	CTCAG	3 cut(s)	44, 122, 189
BseNI	ACTGG	4 cut(s)	740, 846, 958, 1264
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	6 cut(s)	277, 505, 1207, 1210, 1300, 1339
BseYI	CCCAGC	1 cut(s)	757
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	5, 9, 1272
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	31, 148
BsiSI	CCGG	5 cut(s)	6, 10, 36, 42, 940
BslFI	GGGAC	2 cut(s)	26, 671
BslI	CCNNNNNNNGG	2 cut(s)	312, 458
BsmAI	GTCTC	3 cut(s)	111, 162, 698
BsmFI	GGGAC	2 cut(s)	26, 671
BsnI	GGCC	3 cut(s)	5, 9, 1272
Bso31I	GGTCTC	2 cut(s)	111, 698
Bsp1286I	GDGCHC	2 cut(s)	31, 148
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	274, 360, 577, 1108
Bsp19I	CCATGG	1 cut(s)	1273
BspACI	CCGC	3 cut(s)	53, 497, 1217
BspANI	GGCC	3 cut(s)	5, 9, 1272
BspCNI	CTCAG	3 cut(s)	43, 121, 190
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	40, 1059
BspMAI	CTGCAG	1 cut(s)	523
BspTI	CTTAAG	1 cut(s)	644
BspTNI	GGTCTC	2 cut(s)	111, 698
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	4 cut(s)	740, 846, 958, 1264
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	4 cut(s)	311, 457, 690, 1273
BssMI	GATC	4 cut(s)	274, 360, 577, 1108
BssNI	GRCGYC	1 cut(s)	1152
BssSI	CACGAG	2 cut(s)	342, 864
BssT1I	CCWWGG	2 cut(s)	690, 1273
Bst2BI	CACGAG	2 cut(s)	342, 864
Bst2UI	CCWGG	3 cut(s)	312, 459, 745
Bst4CI	ACNGT	4 cut(s)	133, 553, 1089, 1127
BstACI	GRCGYC	1 cut(s)	1152
BstAFI	CTTAAG	1 cut(s)	644
BstC8I	GCNNGC	4 cut(s)	7, 516, 681, 1311
BstDEI	CTNAG	5 cut(s)	30, 90, 108, 198, 319
BstDSI	CCRYGG	1 cut(s)	1273
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstF5I	GGATG	4 cut(s)	127, 294, 399, 1309
BstH2I	RGCGCY	2 cut(s)	254, 319
BstHHI	GCGC	2 cut(s)	253, 318
BstKTI	GATC	4 cut(s)	277, 363, 580, 1111
BstMAI	GTCTC	3 cut(s)	111, 162, 698
BstMBI	GATC	4 cut(s)	274, 360, 577, 1108
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 1223, 1361
BstNI	CCWGG	3 cut(s)	312, 459, 745
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	5 cut(s)	9, 35, 310, 457, 743
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	6 cut(s)	277, 505, 1207, 1210, 1300, 1339
BstV2I	GAAGAC	1 cut(s)	632
BstZI	CGGCCG	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	5, 9, 1272
BtgI	CCRYGG	1 cut(s)	1273
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	4 cut(s)	127, 294, 399, 1309
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	5 cut(s)	82, 473, 490, 573, 1000
Cac8I	GCNNGC	4 cut(s)	7, 516, 681, 1311
CfoI	GCGC	2 cut(s)	253, 318
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	1123, 1359
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviAII	CATG	9 cut(s)	328, 403, 448, 500, 671, 773, 884, 893, 1274
CviQI	GTAC	2 cut(s)	1123, 1359
DdeI	CTNAG	5 cut(s)	30, 90, 108, 198, 319
DpnI	GATC	4 cut(s)	276, 362, 579, 1110
DpnII	GATC	4 cut(s)	274, 360, 577, 1108
EaeI	YGGCCR	3 cut(s)	3, 7, 1270
EagI	CGGCCG	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	690, 1273
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	2 cut(s)	111, 698
Eco32I	GATATC	1 cut(s)	877
Eco47I	GGWCC	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	976
EcoICRI	GAGCTC	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoRI	GAATTC	1 cut(s)	1291
EcoRII	CCWGG	3 cut(s)	310, 457, 743
EcoRV	GATATC	1 cut(s)	877
EcoT14I	CCWWGG	2 cut(s)	690, 1273
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	2 cut(s)	690, 1273
FaeI	CATG	9 cut(s)	331, 406, 451, 503, 674, 776, 887, 896, 1277
FaqI	GGGAC	2 cut(s)	26, 671
FatI	CATG	9 cut(s)	327, 402, 447, 499, 670, 772, 883, 892, 1273
FauI	CCCGC	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	1252
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	8 cut(s)	54, 266, 519, 1218, 1221, 1224, 1314, 1353
FokI	GGATG	4 cut(s)	134, 281, 406, 1316
FriOI	GRGCYC	1 cut(s)	148
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	8 cut(s)	54, 266, 519, 1218, 1221, 1224, 1314, 1353
FspBI	CTAG	4 cut(s)	177, 299, 377, 1025
GlaI	GCGC	2 cut(s)	252, 317
GluI	GCNGC	8 cut(s)	54, 266, 519, 1218, 1221, 1224, 1314, 1353
GsaI	CCCAGC	1 cut(s)	761
GsuI	CTGGAG	2 cut(s)	294, 299
HaeII	RGCGCY	2 cut(s)	254, 319
HaeIII	GGCC	3 cut(s)	5, 9, 1272
HapII	CCGG	5 cut(s)	6, 10, 36, 42, 940
HhaI	GCGC	2 cut(s)	253, 318
Hin1I	GRCGYC	1 cut(s)	1152
Hin1II	CATG	9 cut(s)	331, 406, 451, 503, 674, 776, 887, 896, 1277
Hin6I	GCGC	2 cut(s)	251, 316
HinP1I	GCGC	2 cut(s)	251, 316
HincII	GTYRAC	2 cut(s)	87, 292
HindII	GTYRAC	2 cut(s)	87, 292
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	3 cut(s)	753, 1043, 1202
HpaII	CCGG	5 cut(s)	6, 10, 36, 42, 940
HphI	GGTGA	3 cut(s)	788, 929, 1352
Hpy166II	GTNNAC	4 cut(s)	87, 292, 325, 937
Hpy188I	TCNGA	8 cut(s)	33, 111, 162, 183, 216, 549, 951, 1113
Hpy188III	TCNNGA	7 cut(s)	42, 272, 278, 342, 355, 532, 864
Hpy8I	GTNNAC	4 cut(s)	87, 292, 325, 937
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	1033
HpyCH4III	ACNGT	4 cut(s)	133, 553, 1089, 1127
HpyCH4IV	ACGT	2 cut(s)	958, 1152
HpyCH4V	TGCA	6 cut(s)	464, 488, 521, 787, 980, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 1223, 1361
HpyF3I	CTNAG	5 cut(s)	30, 90, 108, 198, 319
HpySE526I	ACGT	2 cut(s)	958, 1152
Hsp92I	GRCGYC	1 cut(s)	1152
Hsp92II	CATG	9 cut(s)	331, 406, 451, 503, 674, 776, 887, 896, 1277
HspAI	GCGC	2 cut(s)	251, 316
Kpn2I	TCCGGA	1 cut(s)	41
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	274, 360, 577, 1108
LmnI	GCTCC	2 cut(s)	248, 716
Lsp1109I	GCAGC	6 cut(s)	277, 505, 1207, 1210, 1300, 1339
LweI	GCATC	1 cut(s)	1339
MaeI	CTAG	4 cut(s)	177, 299, 377, 1025
MaeII	ACGT	2 cut(s)	958, 1152
MaeIII	GTNAC	3 cut(s)	339, 776, 1133
MalI	GATC	4 cut(s)	276, 362, 579, 1110
MboI	GATC	4 cut(s)	274, 360, 577, 1108
MboII	GAAGA	5 cut(s)	439, 632, 982, 1197, 1287
MfeI	CAATTG	1 cut(s)	725
MhlI	GDGCHC	2 cut(s)	31, 148
MlsI	TGGCCA	1 cut(s)	1272
MluCI	AATT	7 cut(s)	725, 901, 1063, 1168, 1282, 1291, 1384
MluNI	TGGCCA	1 cut(s)	1272
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	4 cut(s)	107, 185, 378, 929
Mox20I	TGGCCA	1 cut(s)	1272
MroI	TCCGGA	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	1272
MseI	TTAA	5 cut(s)	645, 686, 819, 1034, 1071
MslI	CAYNNNNRTG	1 cut(s)	633
Msp20I	TGGCCA	1 cut(s)	1272
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	5 cut(s)	6, 10, 36, 42, 940
MspR9I	CCNGG	5 cut(s)	11, 37, 312, 459, 745
MunI	CAATTG	1 cut(s)	725
MvaI	CCWGG	3 cut(s)	312, 459, 745
MwoI	GCNNNNNNNGC	3 cut(s)	230, 1223, 1361
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	2 cut(s)	11, 37
NcoI	CCATGG	1 cut(s)	1273
NdeI	CATATG	1 cut(s)	1252
NdeII	GATC	4 cut(s)	274, 360, 577, 1108
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	9 cut(s)	331, 406, 451, 503, 674, 776, 887, 896, 1277
NlaIV	GGNNCC	2 cut(s)	40, 1059
NmuCI	GTSAC	2 cut(s)	339, 776
NspI	RCATGY	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	955
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	2 cut(s)	753, 1202
PflFI	GACNNNGTC	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	743
PkrI	GCNGC	8 cut(s)	55, 267, 520, 1219, 1222, 1225, 1315, 1354
PleI	GAGTC	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	1051
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	3 cut(s)	310, 457, 743
PspFI	CCCAGC	1 cut(s)	757
PspGI	CCWGG	3 cut(s)	310, 457, 743
PspN4I	GGNNCC	2 cut(s)	40, 1059
PspPI	GGNCC	1 cut(s)	39
PsrI	GAACNNNNNNTAC	2 cut(s)	1351, 1383
PstI	CTGCAG	1 cut(s)	523
PsyI	GACNNNGTC	1 cut(s)	37
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	2 cut(s)	1124, 1360
RsaNI	GTAC	2 cut(s)	1123, 1359
RseI	CAYNNNNRTG	1 cut(s)	633
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	5 cut(s)	645, 686, 819, 1034, 1071
SatI	GCNGC	8 cut(s)	54, 266, 519, 1218, 1221, 1224, 1314, 1353
Sau3AI	GATC	4 cut(s)	274, 360, 577, 1108
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	5 cut(s)	11, 37, 312, 459, 745
SduI	GDGCHC	2 cut(s)	31, 148
SfaNI	GCATC	1 cut(s)	1339
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	3 cut(s)	353, 530, 644
SmoI	CTYRAG	3 cut(s)	353, 530, 644
SpeI	ACTAGT	1 cut(s)	1024
Sse9I	AATT	7 cut(s)	725, 901, 1063, 1168, 1282, 1291, 1384
SsiI	CCGC	3 cut(s)	53, 497, 1217
SspI	AATATT	1 cut(s)	1396
SspMI	CTAG	4 cut(s)	177, 299, 377, 1025
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	5 cut(s)	9, 35, 310, 457, 743
StyI	CCWWGG	2 cut(s)	690, 1273
TaaI	ACNGT	4 cut(s)	133, 553, 1089, 1127
TaiI	ACGT	2 cut(s)	961, 1155
TaqI	TCGA	1 cut(s)	1373
TasI	AATT	7 cut(s)	725, 901, 1063, 1168, 1282, 1291, 1384
TauI	GCSGC	2 cut(s)	56, 1220
TfiI	GAWTC	2 cut(s)	753, 1202
Tru1I	TTAA	5 cut(s)	645, 686, 819, 1034, 1071
Tru9I	TTAA	5 cut(s)	645, 686, 819, 1034, 1071
TscAI	CASTG	5 cut(s)	82, 480, 490, 580, 1000
TseFI	GTSAC	2 cut(s)	339, 776
TseI	GCWGC	6 cut(s)	265, 518, 1220, 1223, 1313, 1352
Tsp45I	GTSAC	2 cut(s)	339, 776
TspDTI	ATGAA	7 cut(s)	516, 678, 1052, 1239, 1254, 1359, 1404
TspGWI	ACGGA	1 cut(s)	1145
TspRI	CASTG	5 cut(s)	82, 480, 490, 580, 1000
Tth111I	GACNNNGTC	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	456
XapI	RAATTY	1 cut(s)	1291
XceI	RCATGY	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	4 cut(s)	177, 299, 377, 1025
ZraI	GACGTC	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.