Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

66137598 .. 66139523

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0480000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAGAAAGAAGACACCGTGAAGCTGATCAGCGCCGAGGGCTTCGAATTCGTCGTCCACAAAGACGCCGCCATGGTCTCTCAGACCATCCGCAACATGCTCACATCTCCAGGGGGTTTTTCTGAAACGGAACACGGTGAGGTGACGTTCCCTGAGATCAGCACCACCATTCTTGAGAAGATCTGCAAGTATTTTTATTGGAATCTTCAATTCGCCAGTGGTAAGCAGACTGAGTTTCACATTGAACCAGAACTGACCCTGGAGTTGATGATGGCAGCCAATTATCTTCATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

98

Amino Acids

11.21

Weight (kDa)

5.08

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 67	6.1e-08	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 91
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	209, 245
AjnI	CCWGG	2 cut(s)	109, 258
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	149, 154
AsuII	TTCGAA	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	95, 265
BciT130I	CCWGG	2 cut(s)	111, 260
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	82
BfoI	RGCGCY	1 cut(s)	36
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	69, 276
BlsI	GCNGC	2 cut(s)	70, 277
Bme1390I	CCNGG	2 cut(s)	111, 260
BmrFI	CCNGG	2 cut(s)	111, 260
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	2 cut(s)	93, 281
Bpu14I	TTCGAA	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	4 cut(s)	36, 72, 110, 258
Bse1I	ACTGG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	111, 260
BseDI	CCNNGG	4 cut(s)	36, 72, 110, 258
BseGI	GGATG	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	95, 144, 222
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	27, 156, 180
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	69, 91
BspCNI	CTCAG	3 cut(s)	94, 145, 223
BspT104I	TTCGAA	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	4 cut(s)	36, 72, 110, 258
BssMI	GATC	3 cut(s)	27, 156, 180
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	111, 260
Bst4CI	ACNGT	2 cut(s)	19, 137
BstACI	GRCGYC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	81, 153, 231
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	30, 159, 183
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	27, 156, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	2 cut(s)	111, 260
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	109, 258
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	35
CseI	GACGC	1 cut(s)	74
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	2 cut(s)	73, 97
CviJI	RGCY	3 cut(s)	25, 42, 278
CviKI_1	RGCY	3 cut(s)	25, 42, 278
DdeI	CTNAG	3 cut(s)	81, 153, 231
DpnI	GATC	3 cut(s)	29, 158, 182
DpnII	GATC	3 cut(s)	27, 156, 180
Eco130I	CCWWGG	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	109, 258
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	76, 100
FaiI	YATR	4 cut(s)	74, 98, 291, 295
FatI	CATG	2 cut(s)	72, 96
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	69, 276
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	69, 276
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	69, 276
GsuI	CTGGAG	2 cut(s)	93, 281
HaeII	RGCGCY	1 cut(s)	36
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	76, 100
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	202
HphI	GGTGA	2 cut(s)	149, 154
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	84, 124
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	19, 137
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	3 cut(s)	81, 153, 231
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	76, 100
HspAI	GCGC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	27, 156, 180
LpnPI	CCDG	7 cut(s)	96, 123, 165, 229, 245, 261, 272
Lsp1109I	GCAGC	1 cut(s)	287
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	29, 158, 182
MboI	GATC	3 cut(s)	27, 156, 180
MboII	GAAGA	5 cut(s)	16, 23, 190, 197, 278
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	3 cut(s)	47, 209, 280
MnlI	CCTC	2 cut(s)	31, 133
MspR9I	CCNGG	2 cut(s)	111, 260
MvaI	CCWGG	2 cut(s)	111, 260
MwoI	GCNNNNNNNGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	3 cut(s)	27, 156, 180
NlaIII	CATG	2 cut(s)	76, 100
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	70, 277
Psp6I	CCWGG	2 cut(s)	109, 258
PspGI	CCWGG	2 cut(s)	109, 258
PsuI	RGATCY	1 cut(s)	180
SatI	GCNGC	2 cut(s)	69, 276
Sau3AI	GATC	3 cut(s)	27, 156, 180
ScrFI	CCNGG	2 cut(s)	111, 260
SetI	ASST	3 cut(s)	27, 144, 149
SfuI	TTCGAA	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	47, 209, 280
SsiI	CCGC	2 cut(s)	69, 91
StyD4I	CCNGG	2 cut(s)	109, 258
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	19, 137
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	47, 209, 280
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	17, 278
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.