Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Reverse (-)

2807124 .. 2810715

Gene Structure 3592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG040500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAGCCTGAGGACGATGGCTTGGGCCGAAGCGGTGACCGAGTCCGCCCGGAAGCAAACTCGCCCACTTCCCCCGCCGCGCAACACTACCTACGTGCCTCCGCATCTTCGCTACTCCGGCGGCGGTGGCGATGGTGGTGGTTACAGCTCCTACGGCCGTGGCTCTAGTGAGTCGACTCAGTACGGTTTTGGTGGTGGTGGTGGTGGTGGTTACAGGGGAGGCGGCCGGAGCGGTCCGGGTCGCGACGGAGGACGAGGAGGTCGTCGTGGTGGTGGTGGTGGCCGGAGTCGAGGTTGGGTACAGACGCCGAGGCCGAACAGGGAGGCGTTTCATGACGTGTCCGGGAAATTTGAGCAGCTGGAAGTGAGGGAGGGGGATGATGTCAGCAATGTGGGTATAAATTTCGATGCTTACGAGGATATTCCGGTGGAGGCGAGCGGCGAGGACGTGCCGGCGCCGGCGAGCACTTTTGGGGAGATTGATTTGGGGGAGTGCTTGAACAACAACATCAAGAGGTGTAGGTACGTGAAGCCGACGCCGGTTCAGCGCCACGCGATTCCGATAGCCATGGCCGGCCGGGACTTGATGGCTTGTGCTCAGACCGGGTCCGGAAAGACGGCGGCTTTTTGCTTCCCCATTATCAGTGGAGTGTTGACTAAGCGTGTGGAGAGGTCTCAGAGTAACGGGGATGGTTGGACTGTGTTTCCCAGAGCTCTCATTTTGTCTCCGACGAGAGAGTTGGCTAGTCAGATATTTGAGGAAGCTGAGAAGTTTGCTTATCAGAGTGGGGCAAAAGTGGCTGTTGTTTATGGTGGAGGGCCGATGGGTCAGCAGCTTCGTGATCTGGAGAGAGGTGTTGACATCCTAGTCGCCACTCCAGGGCGCTTAGTGGACATGATTGAAAGGTCACGAGTTTCACTCAAGATGATCAAATACTTGGCACTAGATGAGGCTGATAGGATGTTGGACATGGGTTTTGAACCTCAAATAAGGAAGATTGTTCAAAGAATGGACATGCCTCCCCCAGGTGCAAGACAAACACTGCTTTTCAGTGCAACATTCCCGCATGAAATACAGAGACTTGCTGCAGATTTCCTCAAGAACTACATTTTTCTGACTGTTGGGAGAGTTGGGTCAAGCACTGATCTTATAGCACAAAAGGTTGAGTTTGTCAGGGATATGGACAAAATACAGCATTTACGTGGTCTTCTTGAGAACCAGAGGGACAATGAAACTCATGGAAAGCTTGCTTTAACCTTGGTGTTTGTTGAGACCAAGAAAGGAGCAAATCAATTGGAAAACTGGTTGTCCAGGAATGGATTCCCCGCAATAGCAATACATGGTGACAAAGTGCAAATGGATTCCTATGATCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

459

Amino Acids

50.03

Weight (kDa)

8.89

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	179 - 360	2.1e-50	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	258, 866
AccB1I	GGYRCC	1 cut(s)	454
AccBSI	CCGCTC	2 cut(s)	231, 438
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	3 cut(s)	79, 243, 554
AccIII	TCCGGA	1 cut(s)	608
AclWI	GGATC	1 cut(s)	1364
AcoI	YGGCCR	5 cut(s)	154, 223, 280, 570, 574
AcsI	RAATTY	2 cut(s)	347, 400
AcyI	GRCGYC	3 cut(s)	305, 455, 536
AfaI	GTAC	3 cut(s)	182, 300, 524
AfiI	CCNNNNNNNGG	2 cut(s)	879, 1025
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	4 cut(s)	499, 902, 980, 1004
AjiI	CACGTC	2 cut(s)	337, 448
AjnI	CCWGG	3 cut(s)	877, 1024, 1310
AluBI	AGCT	6 cut(s)	147, 358, 713, 764, 835, 1246
AluI	AGCT	6 cut(s)	147, 358, 713, 764, 835, 1246
Alw21I	GWGCWC	3 cut(s)	467, 598, 715
Alw26I	GTCTC	4 cut(s)	678, 729, 1072, 1265
AlwI	GGATC	1 cut(s)	1364
Aor13HI	TCCGGA	1 cut(s)	608
AoxI	GGCC	8 cut(s)	24, 154, 223, 280, 311, 570, 574, 818
ApeKI	GCWGC	3 cut(s)	355, 832, 1085
ApoI	RAATTY	2 cut(s)	347, 400
ArsI	GACNNNNNNTTYG	2 cut(s)	959, 991
Asp700I	GAANNNNTTC	1 cut(s)	1319
AspLEI	GCGC	4 cut(s)	81, 457, 549, 885
AspS9I	GGNCC	4 cut(s)	24, 233, 606, 818
AsuC2I	CCSGG	5 cut(s)	49, 237, 343, 578, 604
AsuHPI	GGTGA	2 cut(s)	46, 1355
AvaII	GGWCC	2 cut(s)	233, 606
AxyI	CCTNAGG	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	715
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	1 cut(s)	1199
Bbv12I	GWGCWC	3 cut(s)	467, 598, 715
BbvI	GCAGC	3 cut(s)	367, 844, 1072
BccI	CCATC	5 cut(s)	10, 125, 580, 683, 817
BceAI	ACGGC	3 cut(s)	141, 169, 633
BciT130I	CCWGG	3 cut(s)	879, 1026, 1312
BclI	TGATCA	1 cut(s)	927
BcnI	CCSGG	5 cut(s)	49, 237, 343, 578, 604
BcoDI	GTCTC	4 cut(s)	678, 729, 1072, 1265
BfaI	CTAG	4 cut(s)	165, 744, 866, 944
BfmI	CTRYAG	1 cut(s)	1086
BfoI	RGCGCY	3 cut(s)	458, 550, 886
BisI	GCNGC	8 cut(s)	77, 121, 223, 356, 439, 621, 833, 1086
BlsI	GCNGC	8 cut(s)	78, 122, 224, 357, 440, 622, 834, 1087
Bme1390I	CCNGG	8 cut(s)	49, 237, 343, 578, 604, 879, 1026, 1312
Bme18I	GGWCC	2 cut(s)	233, 606
BmgBI	CACGTC	2 cut(s)	337, 448
BmgT120I	GGNCC	4 cut(s)	24, 233, 606, 818
BmiI	GGNNCC	2 cut(s)	456, 607
BmrFI	CCNGG	8 cut(s)	49, 237, 343, 578, 604, 879, 1026, 1312
BmsI	GCATC	2 cut(s)	112, 397
BpiI	GAAGAC	1 cut(s)	1199
BplI	GAGNNNNNCTC	2 cut(s)	903, 935
BpmI	CTGGAG	2 cut(s)	861, 866
BpuEI	CTTGAG	3 cut(s)	905, 1082, 1232
BpuMI	CCSGG	5 cut(s)	49, 237, 343, 578, 604
BsaAI	YACGTR	3 cut(s)	94, 526, 1202
BsaHI	GRCGYC	3 cut(s)	305, 455, 536
BsaI	GGTCTC	2 cut(s)	678, 1265
BsaJI	CCNNGG	6 cut(s)	157, 308, 567, 878, 1024, 1257
BsaWI	WCCGGW	2 cut(s)	424, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	879, 1025
Bse118I	RCCGGY	4 cut(s)	451, 457, 538, 572
Bse1I	ACTGG	1 cut(s)	1307
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	394
BseAI	TCCGGA	1 cut(s)	608
BseBI	CCWGG	3 cut(s)	879, 1026, 1312
BseDI	CCNNGG	6 cut(s)	157, 308, 567, 878, 1024, 1257
BseGI	GGATG	4 cut(s)	382, 694, 861, 966
BseLI	CCNNNNNNNGG	2 cut(s)	879, 1025
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	4 cut(s)	191, 611, 689, 756
BseNI	ACTGG	1 cut(s)	1307
BseRI	GAGGAG	1 cut(s)	270
BseX3I	CGGCCG	3 cut(s)	154, 223, 574
BseXI	GCAGC	3 cut(s)	367, 844, 1072
Bsh1236I	CGCG	3 cut(s)	79, 243, 554
Bsh1285I	CGRYCG	3 cut(s)	157, 226, 577
BshFI	GGCC	8 cut(s)	26, 156, 225, 282, 313, 572, 576, 820
BshNI	GGYRCC	1 cut(s)	454
BsiEI	CGRYCG	3 cut(s)	157, 226, 577
BsiHKAI	GWGCWC	3 cut(s)	467, 598, 715
BslFI	GGGAC	2 cut(s)	593, 1238
BslI	CCNNNNNNNGG	2 cut(s)	879, 1025
BsmAI	GTCTC	4 cut(s)	678, 729, 1072, 1265
BsmFI	GGGAC	2 cut(s)	593, 1238
BsnI	GGCC	8 cut(s)	26, 156, 225, 282, 313, 572, 576, 820
Bso31I	GGTCTC	2 cut(s)	678, 1265
Bsp1286I	GDGCHC	3 cut(s)	467, 598, 715
Bsp13I	TCCGGA	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	841, 927, 1144, 1369
Bsp19I	CCATGG	1 cut(s)	567
Bsp68I	TCGCGA	1 cut(s)	243
BspANI	GGCC	8 cut(s)	26, 156, 225, 282, 313, 572, 576, 820
BspCNI	CTCAG	4 cut(s)	190, 610, 688, 757
BspEI	TCCGGA	1 cut(s)	608
BspFNI	CGCG	3 cut(s)	79, 243, 554
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	456, 607
BspMAI	CTGCAG	1 cut(s)	1090
BspPI	GGATC	1 cut(s)	1364
BspT107I	GGYRCC	1 cut(s)	454
BspTNI	GGTCTC	2 cut(s)	678, 1265
BsrBI	CCGCTC	2 cut(s)	231, 438
BsrDI	GCAATG	1 cut(s)	394
BsrFI	RCCGGY	4 cut(s)	451, 457, 538, 572
BsrI	ACTGG	1 cut(s)	1307
BssAI	RCCGGY	4 cut(s)	451, 457, 538, 572
BssECI	CCNNGG	6 cut(s)	157, 308, 567, 878, 1024, 1257
BssMI	GATC	4 cut(s)	841, 927, 1144, 1369
BssNI	GRCGYC	3 cut(s)	305, 455, 536
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	2 cut(s)	567, 1257
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	3 cut(s)	879, 1026, 1312
Bst4CI	ACNGT	3 cut(s)	185, 700, 1120
BstACI	GRCGYC	3 cut(s)	305, 455, 536
BstBAI	YACGTR	3 cut(s)	94, 526, 1202
BstC8I	GCNNGC	6 cut(s)	436, 453, 459, 463, 574, 1248
BstDEI	CTNAG	7 cut(s)	8, 177, 597, 657, 675, 765, 886
BstDSI	CCRYGG	2 cut(s)	157, 567
BstEII	GGTNACC	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	1023
BstF5I	GGATG	4 cut(s)	382, 694, 861, 966
BstFNI	CGCG	3 cut(s)	79, 243, 554
BstH2I	RGCGCY	3 cut(s)	458, 550, 886
BstHHI	GCGC	4 cut(s)	81, 457, 549, 885
BstKTI	GATC	4 cut(s)	844, 930, 1147, 1372
BstMAI	GTCTC	4 cut(s)	678, 729, 1072, 1265
BstMBI	GATC	4 cut(s)	841, 927, 1144, 1369
BstMCI	CGRYCG	3 cut(s)	157, 226, 577
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 126, 153, 228, 544, 797
BstNI	CCWGG	3 cut(s)	879, 1026, 1312
BstNSI	RCATGY	1 cut(s)	1018
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	8 cut(s)	47, 235, 341, 576, 602, 877, 1024, 1310
BstSFI	CTRYAG	1 cut(s)	1086
BstUI	CGCG	3 cut(s)	79, 243, 554
BstV1I	GCAGC	3 cut(s)	367, 844, 1072
BstV2I	GAAGAC	1 cut(s)	1199
BstZI	CGGCCG	3 cut(s)	154, 223, 574
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	8 cut(s)	26, 156, 225, 282, 313, 572, 576, 820
BtgI	CCRYGG	2 cut(s)	157, 567
BtgZI	GCGATG	1 cut(s)	144
BtrI	CACGTC	2 cut(s)	337, 448
BtsCI	GGATG	4 cut(s)	382, 694, 861, 966
BtsI	GCAGTG	1 cut(s)	1040
BtsIMutI	CAGTG	4 cut(s)	649, 1040, 1057, 1140
BtuMI	TCGCGA	1 cut(s)	243
Cac8I	GCNNGC	6 cut(s)	436, 453, 459, 463, 574, 1248
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	4 cut(s)	81, 457, 549, 885
Cfr10I	RCCGGY	4 cut(s)	451, 457, 538, 572
Cfr13I	GGNCC	4 cut(s)	24, 233, 606, 818
CpoI	CGGWCCG	1 cut(s)	233
CseI	GACGC	2 cut(s)	313, 544
Csp6I	GTAC	3 cut(s)	181, 299, 523
CspI	CGGWCCG	1 cut(s)	233
CviAII	CATG	8 cut(s)	332, 568, 895, 970, 1015, 1067, 1238, 1340
CviQI	GTAC	3 cut(s)	181, 299, 523
DdeI	CTNAG	7 cut(s)	8, 177, 597, 657, 675, 765, 886
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	4 cut(s)	843, 929, 1146, 1371
DpnII	GATC	4 cut(s)	841, 927, 1144, 1369
DrdI	GACNNNNNNGTC	2 cut(s)	258, 866
DseDI	GACNNNNNNGTC	2 cut(s)	258, 866
EaeI	YGGCCR	5 cut(s)	154, 223, 280, 570, 574
EagI	CGGCCG	3 cut(s)	154, 223, 574
EciI	GGCGGA	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	713
EclXI	CGGCCG	3 cut(s)	154, 223, 574
Eco130I	CCWWGG	2 cut(s)	567, 1257
Eco24I	GRGCYC	1 cut(s)	715
Eco31I	GGTCTC	2 cut(s)	678, 1265
Eco47I	GGWCC	2 cut(s)	233, 606
Eco52I	CGGCCG	3 cut(s)	154, 223, 574
Eco53kI	GAGCTC	1 cut(s)	713
Eco81I	CCTNAGG	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	713
EcoNI	CCTNNNNNAGG	1 cut(s)	1023
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	3 cut(s)	877, 1024, 1310
EcoT14I	CCWWGG	2 cut(s)	567, 1257
EcoT38I	GRGCYC	1 cut(s)	715
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
ErhI	CCWWGG	2 cut(s)	567, 1257
FaeI	CATG	8 cut(s)	335, 571, 898, 973, 1018, 1070, 1241, 1343
FaqI	GGGAC	2 cut(s)	593, 1238
FatI	CATG	8 cut(s)	331, 567, 894, 969, 1014, 1066, 1237, 1339
FauI	CCCGC	3 cut(s)	81, 1071, 1333
FbaI	TGATCA	1 cut(s)	927
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	8 cut(s)	77, 121, 223, 356, 439, 621, 833, 1086
FokI	GGATG	4 cut(s)	389, 701, 848, 973
FriOI	GRGCYC	1 cut(s)	715
FseI	GGCCGGCC	1 cut(s)	576
Fsp4HI	GCNGC	8 cut(s)	77, 121, 223, 356, 439, 621, 833, 1086
FspBI	CTAG	4 cut(s)	165, 744, 866, 944
GlaI	GCGC	4 cut(s)	80, 456, 548, 884
GluI	GCNGC	8 cut(s)	77, 121, 223, 356, 439, 621, 833, 1086
GsuI	CTGGAG	2 cut(s)	861, 866
HaeII	RGCGCY	3 cut(s)	458, 550, 886
HaeIII	GGCC	8 cut(s)	26, 156, 225, 282, 313, 572, 576, 820
HgaI	GACGC	2 cut(s)	313, 544
HhaI	GCGC	4 cut(s)	81, 457, 549, 885
Hin1I	GRCGYC	3 cut(s)	305, 455, 536
Hin1II	CATG	8 cut(s)	335, 571, 898, 973, 1018, 1070, 1241, 1343
Hin6I	GCGC	4 cut(s)	79, 455, 547, 883
HinP1I	GCGC	4 cut(s)	79, 455, 547, 883
HincII	GTYRAC	3 cut(s)	174, 654, 859
HindII	GTYRAC	3 cut(s)	174, 654, 859
HindIII	AAGCTT	1 cut(s)	1244
HinfI	GANTC	7 cut(s)	41, 170, 175, 286, 556, 1320, 1361
HphI	GGTGA	2 cut(s)	46, 1355
Hpy166II	GTNNAC	4 cut(s)	174, 654, 859, 892
Hpy188I	TCNGA	8 cut(s)	561, 600, 678, 729, 750, 783, 1116, 1379
Hpy8I	GTNNAC	4 cut(s)	174, 654, 859, 892
Hpy99I	CGWCG	4 cut(s)	248, 267, 538, 733
HpyCH4III	ACNGT	3 cut(s)	185, 700, 1120
HpyCH4IV	ACGT	5 cut(s)	93, 336, 447, 525, 1201
HpyCH4V	TGCA	4 cut(s)	1031, 1055, 1088, 1354
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 126, 153, 228, 544, 797
HpyF3I	CTNAG	7 cut(s)	8, 177, 597, 657, 675, 765, 886
HpySE526I	ACGT	5 cut(s)	93, 336, 447, 525, 1201
Hsp92I	GRCGYC	3 cut(s)	305, 455, 536
Hsp92II	CATG	8 cut(s)	335, 571, 898, 973, 1018, 1070, 1241, 1343
HspAI	GCGC	4 cut(s)	79, 455, 547, 883
KasI	GGCGCC	1 cut(s)	454
Kpn2I	TCCGGA	1 cut(s)	608
KroI	GCCGGC	3 cut(s)	451, 457, 572
KroNI	GCCGGC	3 cut(s)	453, 459, 574
Ksp22I	TGATCA	1 cut(s)	927
Kzo9I	GATC	4 cut(s)	841, 927, 1144, 1369
LmnI	GCTCC	3 cut(s)	152, 228, 1283
Lsp1109I	GCAGC	3 cut(s)	367, 844, 1072
LweI	GCATC	2 cut(s)	112, 397
MaeI	CTAG	4 cut(s)	165, 744, 866, 944
MaeII	ACGT	5 cut(s)	93, 336, 447, 525, 1201
MaeIII	GTNAC	6 cut(s)	34, 140, 209, 680, 906, 1343
MalI	GATC	4 cut(s)	843, 929, 1146, 1371
MbiI	CCGCTC	2 cut(s)	231, 438
MboI	GATC	4 cut(s)	841, 927, 1144, 1369
MboII	GAAGA	3 cut(s)	98, 1006, 1199
MfeI	CAATTG	1 cut(s)	1292
MhlI	GDGCHC	3 cut(s)	467, 598, 715
MluCI	AATT	3 cut(s)	347, 400, 1292
Mly113I	GGCGCC	1 cut(s)	455
MlyI	GAGTC	4 cut(s)	50, 169, 179, 295
MmeI	TCCRAC	3 cut(s)	674, 752, 945
MreI	CGCCGGCG	1 cut(s)	457
MroI	TCCGGA	1 cut(s)	608
MroNI	GCCGGC	3 cut(s)	451, 457, 572
MroXI	GAANNNNTTC	1 cut(s)	1319
MseI	TTAA	1 cut(s)	1253
MslI	CAYNNNNRTG	1 cut(s)	1200
MspA1I	CMGCKG	1 cut(s)	358
MspR9I	CCNGG	8 cut(s)	49, 237, 343, 578, 604, 879, 1026, 1312
MunI	CAATTG	1 cut(s)	1292
MvaI	CCWGG	3 cut(s)	879, 1026, 1312
MvnI	CGCG	3 cut(s)	79, 243, 554
MwoI	GCNNNNNNNGC	6 cut(s)	117, 126, 153, 228, 544, 797
NaeI	GCCGGC	3 cut(s)	453, 459, 574
NarI	GGCGCC	1 cut(s)	455
NciI	CCSGG	5 cut(s)	49, 237, 343, 578, 604
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	4 cut(s)	841, 927, 1144, 1369
NgoMIV	GCCGGC	3 cut(s)	451, 457, 572
NlaIII	CATG	8 cut(s)	335, 571, 898, 973, 1018, 1070, 1241, 1343
NlaIV	GGNNCC	2 cut(s)	456, 607
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	3 cut(s)	34, 906, 1343
NruI	TCGCGA	1 cut(s)	243
NspI	RCATGY	1 cut(s)	1018
PagI	TCATGA	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	3 cut(s)	259, 311, 411
PdiI	GCCGGC	3 cut(s)	453, 459, 574
PdmI	GAANNNNTTC	1 cut(s)	1319
PfeI	GAWTC	3 cut(s)	556, 1320, 1361
PflFI	GACNNNGTC	2 cut(s)	40, 604
PfoI	TCCNGGA	2 cut(s)	341, 1310
PkrI	GCNGC	8 cut(s)	78, 122, 224, 357, 440, 622, 834, 1087
PleI	GAGTC	4 cut(s)	49, 169, 178, 294
PluTI	GGCGCC	1 cut(s)	458
PpsI	GAGTC	4 cut(s)	49, 169, 178, 294
Ppu21I	YACGTR	3 cut(s)	94, 526, 1202
Psp124BI	GAGCTC	1 cut(s)	715
Psp6I	CCWGG	3 cut(s)	877, 1024, 1310
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	3 cut(s)	877, 1024, 1310
PspN4I	GGNNCC	2 cut(s)	456, 607
PspPI	GGNCC	4 cut(s)	24, 233, 606, 818
PstI	CTGCAG	1 cut(s)	1090
PsyI	GACNNNGTC	2 cut(s)	40, 604
PvuII	CAGCTG	1 cut(s)	358
RigI	GGCCGGCC	1 cut(s)	576
RruI	TCGCGA	1 cut(s)	243
RsaI	GTAC	3 cut(s)	182, 300, 524
RsaNI	GTAC	3 cut(s)	181, 299, 523
RseI	CAYNNNNRTG	1 cut(s)	1200
Rsr2I	CGGWCCG	1 cut(s)	233
RsrII	CGGWCCG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	715
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	1253
SatI	GCNGC	8 cut(s)	77, 121, 223, 356, 439, 621, 833, 1086
Sau3AI	GATC	4 cut(s)	841, 927, 1144, 1369
Sau96I	GGNCC	4 cut(s)	24, 233, 606, 818
SchI	GAGTC	4 cut(s)	50, 169, 179, 295
ScrFI	CCNGG	8 cut(s)	49, 237, 343, 578, 604, 879, 1026, 1312
SduI	GDGCHC	3 cut(s)	467, 598, 715
SfaNI	GCATC	2 cut(s)	112, 397
SfcI	CTRYAG	1 cut(s)	1086
SfoI	GGCGCC	1 cut(s)	456
SgrAI	CRCCGGYG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	233, 606
SmiMI	CAYNNNNRTG	1 cut(s)	1200
SmlI	CTYRAG	3 cut(s)	920, 1097, 1211
SmoI	CTYRAG	3 cut(s)	920, 1097, 1211
Sse9I	AATT	3 cut(s)	347, 400, 1292
SspDI	GGCGCC	1 cut(s)	454
SspMI	CTAG	4 cut(s)	165, 744, 866, 944
SstI	GAGCTC	1 cut(s)	715
StyD4I	CCNGG	8 cut(s)	47, 235, 341, 576, 602, 877, 1024, 1310
StyI	CCWWGG	2 cut(s)	567, 1257
TaaI	ACNGT	3 cut(s)	185, 700, 1120
TaiI	ACGT	5 cut(s)	96, 339, 450, 528, 1204
TaqI	TCGA	3 cut(s)	173, 289, 405
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	347, 400, 1292
TauI	GCSGC	5 cut(s)	79, 123, 225, 441, 623
TfiI	GAWTC	3 cut(s)	556, 1320, 1361
Tru1I	TTAA	1 cut(s)	1253
Tru9I	TTAA	1 cut(s)	1253
TscAI	CASTG	4 cut(s)	649, 1047, 1057, 1147
TseFI	GTSAC	3 cut(s)	34, 906, 1343
TseI	GCWGC	3 cut(s)	355, 832, 1085
Tsp45I	GTSAC	3 cut(s)	34, 906, 1343
TspDTI	ATGAA	3 cut(s)	320, 1083, 1245
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	649, 1047, 1057, 1147
Tth111I	GACNNNGTC	2 cut(s)	40, 604
VpaK11BI	GGWCC	2 cut(s)	233, 606
XagI	CCTNNNNNAGG	1 cut(s)	1023
XapI	RAATTY	2 cut(s)	347, 400
XceI	RCATGY	1 cut(s)	1018
XmiI	GTMKAC	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	1319
XspI	CTAG	4 cut(s)	165, 744, 866, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.