Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8475903.1

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2050

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8475903.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

cttcgtgatctggagagaggtgttgacatcctagtcgccactccagggcgcttagtggacatgattgaaaggtcacgagtttcactcaagatgatcaaatacttggcactagatgaggctgataggatgttggacatgggttttgaacctcaaataaggaagattgttcaaagaatggacatgcctcccccaggtgcaagacaaacactgcttttcagtgcaacattcccgcatgaaatacagaggcttgctgcagatttcctcaagaactacatttttctgactgttgggagagttgggtcaagcactgatcttatagcacaaaaggttgagtttgtcagggatatggacaaaatacagcatttatgtggtcttcttaagaaccagagggacaatgaaactcatggaaagcttgctttaaccttggtgtttgttgagaccaagaaaggagcaaatcaattggaaaactggttgtccaggaatggattcccagcaatagcaatacatggtgacaaagtgcaaatggagagggaacgagctttgagattgttcaagtgtggcacaactccaatactggtggcaacagatgttgcttcacgaggtttagatatccctcatgttgcccatgtcatcaattttgacttcccaaaaagcatagatgattatgttcaccggattggtcggactggacgtgctggtaaatctggtcttgcaactgctttcttcagtgaaaagaaccagcctcttgcaaaggcactagtggagttaatgaaggagtcaaagcaggaggttcctaattggcttaatgattatgctgaacagtcattgtcttatggtggagaccagagccaaaggtacagtagcagtaactttggtggatatgacgtccgtaggagtgagaattattatggttcaggcagttatggttatggagattcttctgtgggtgcggctgctgctacttgtaatgatgtttctggttcatatgctactggttcatttggccatggaggaaattatgggaattcttctgtggatgagcctgctgcttcctacaatggttcttatgggggtgaaactgatgctgctggtactgctggttcatcgagctttggaaattatgaaaatattgttgctggtgggtgggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

383

Amino Acids

41.93

Weight (kDa)

6.12

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AatII	GACGTC	1 cut(s)	888
AciI	CCGC	2 cut(s)	230, 950
AcoI	YGGCCR	1 cut(s)	1003
AcsI	RAATTY	1 cut(s)	1024
AcuI	CTGAAG	1 cut(s)	709
AcyI	GRCGYC	1 cut(s)	885
AfaI	GTAC	2 cut(s)	857, 1093
AfiI	CCNNNNNNNGG	2 cut(s)	45, 191
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	68, 146, 170, 553
AhlI	ACTAGT	1 cut(s)	757
AjiI	CACGTC	1 cut(s)	692
AjnI	CCWGG	3 cut(s)	43, 190, 476
AluBI	AGCT	3 cut(s)	412, 539, 1110
AluI	AGCT	3 cut(s)	412, 539, 1110
Alw26I	GTCTC	2 cut(s)	431, 834
AoxI	GGCC	1 cut(s)	1003
ApeKI	GCWGC	5 cut(s)	251, 953, 956, 1046, 1085
ApoI	RAATTY	1 cut(s)	1024
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	521, 662, 1085
BalI	TGGCCA	1 cut(s)	1005
BauI	CACGAG	2 cut(s)	75, 597
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	5 cut(s)	238, 940, 943, 1033, 1072
BciT130I	CCWGG	3 cut(s)	45, 192, 478
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	431, 834
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	3 cut(s)	32, 110, 758
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	52
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	6 cut(s)	252, 951, 954, 957, 1047, 1086
BlsI	GCNGC	6 cut(s)	253, 952, 955, 958, 1048, 1087
Bme1390I	CCNGG	3 cut(s)	45, 192, 478
BmgBI	CACGTC	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	3 cut(s)	45, 192, 478
BmsI	GCATC	1 cut(s)	1072
BpiI	GAAGAC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpmI	CTGGAG	2 cut(s)	27, 32
BpuEI	CTTGAG	2 cut(s)	71, 248
BsaHI	GRCGYC	1 cut(s)	885
BsaI	GGTCTC	2 cut(s)	431, 834
BsaJI	CCNNGG	4 cut(s)	44, 190, 423, 1006
BsaWI	WCCGGW	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 191
Bse1I	ACTGG	4 cut(s)	473, 579, 691, 997
BseBI	CCWGG	3 cut(s)	45, 192, 478
BseDI	CCNNGG	4 cut(s)	44, 190, 423, 1006
BseGI	GGATG	3 cut(s)	27, 132, 1042
BseLI	CCNNNNNNNGG	2 cut(s)	45, 191
BseNI	ACTGG	4 cut(s)	473, 579, 691, 997
BseXI	GCAGC	5 cut(s)	238, 940, 943, 1033, 1072
BseYI	CCCAGC	1 cut(s)	490
BshFI	GGCC	1 cut(s)	1005
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	45, 191
BsmAI	GTCTC	2 cut(s)	431, 834
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	1005
Bso31I	GGTCTC	2 cut(s)	431, 834
Bsp143I	GATC	3 cut(s)	7, 93, 310
Bsp19I	CCATGG	1 cut(s)	1006
BspACI	CCGC	2 cut(s)	230, 950
BspANI	GGCC	1 cut(s)	1005
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	256
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	2 cut(s)	431, 834
BsrI	ACTGG	4 cut(s)	473, 579, 691, 997
BssECI	CCNNGG	4 cut(s)	44, 190, 423, 1006
BssMI	GATC	3 cut(s)	7, 93, 310
BssNI	GRCGYC	1 cut(s)	885
BssSI	CACGAG	2 cut(s)	75, 597
BssT1I	CCWWGG	2 cut(s)	423, 1006
Bst2BI	CACGAG	2 cut(s)	75, 597
Bst2UI	CCWGG	3 cut(s)	45, 192, 478
Bst4CI	ACNGT	3 cut(s)	286, 822, 860
BstACI	GRCGYC	1 cut(s)	885
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	249, 414, 1044
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	1006
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	27, 132, 1042
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	10, 96, 313
BstMAI	GTCTC	2 cut(s)	431, 834
BstMBI	GATC	3 cut(s)	7, 93, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	956, 1094
BstNI	CCWGG	3 cut(s)	45, 192, 478
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	3 cut(s)	43, 190, 476
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	5 cut(s)	238, 940, 943, 1033, 1072
BstV2I	GAAGAC	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	1005
BtgI	CCRYGG	1 cut(s)	1006
BtrI	CACGTC	1 cut(s)	692
BtsCI	GGATG	3 cut(s)	27, 132, 1042
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	4 cut(s)	206, 223, 306, 733
Cac8I	GCNNGC	3 cut(s)	249, 414, 1044
CfoI	GCGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	856, 1092
CspCI	CAANNNNNGTGG	2 cut(s)	558, 593
CviAII	CATG	9 cut(s)	61, 136, 181, 233, 404, 506, 617, 626, 1007
CviQI	GTAC	2 cut(s)	856, 1092
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	3 cut(s)	9, 95, 312
DpnII	GATC	3 cut(s)	7, 93, 310
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	1003
Eco130I	CCWWGG	2 cut(s)	423, 1006
Eco31I	GGTCTC	2 cut(s)	431, 834
Eco32I	GATATC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	709
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	1024
EcoRII	CCWGG	3 cut(s)	43, 190, 476
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	423, 1006
ErhI	CCWWGG	2 cut(s)	423, 1006
FaeI	CATG	9 cut(s)	64, 139, 184, 236, 407, 509, 620, 629, 1010
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	9 cut(s)	60, 135, 180, 232, 403, 505, 616, 625, 1006
FauI	CCCGC	1 cut(s)	237
FauNDI	CATATG	1 cut(s)	985
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	6 cut(s)	252, 951, 954, 957, 1047, 1086
FokI	GGATG	3 cut(s)	14, 139, 1049
Fsp4HI	GCNGC	6 cut(s)	252, 951, 954, 957, 1047, 1086
FspBI	CTAG	3 cut(s)	32, 110, 758
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	6 cut(s)	252, 951, 954, 957, 1047, 1086
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	2 cut(s)	27, 32
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	1005
HapII	CCGG	1 cut(s)	673
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	885
Hin1II	CATG	9 cut(s)	64, 139, 184, 236, 407, 509, 620, 629, 1010
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	3 cut(s)	486, 776, 935
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	3 cut(s)	521, 662, 1085
Hpy166II	GTNNAC	3 cut(s)	25, 58, 670
Hpy188I	TCNGA	2 cut(s)	282, 684
Hpy188III	TCNNGA	6 cut(s)	5, 11, 75, 88, 265, 597
Hpy8I	GTNNAC	3 cut(s)	25, 58, 670
HpyAV	CCTTC	1 cut(s)	766
HpyCH4III	ACNGT	3 cut(s)	286, 822, 860
HpyCH4IV	ACGT	2 cut(s)	691, 885
HpyCH4V	TGCA	6 cut(s)	197, 221, 254, 520, 713, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	956, 1094
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	2 cut(s)	691, 885
Hsp92I	GRCGYC	1 cut(s)	885
Hsp92II	CATG	9 cut(s)	64, 139, 184, 236, 407, 509, 620, 629, 1010
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	7, 93, 310
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	5 cut(s)	238, 940, 943, 1033, 1072
LweI	GCATC	1 cut(s)	1072
MaeI	CTAG	3 cut(s)	32, 110, 758
MaeII	ACGT	2 cut(s)	691, 885
MaeIII	GTNAC	3 cut(s)	72, 509, 866
MalI	GATC	3 cut(s)	9, 95, 312
MboI	GATC	3 cut(s)	7, 93, 310
MboII	GAAGA	5 cut(s)	172, 365, 715, 930, 1020
MfeI	CAATTG	1 cut(s)	458
MlsI	TGGCCA	1 cut(s)	1005
MluCI	AATT	7 cut(s)	458, 634, 796, 901, 1015, 1024, 1117
MluNI	TGGCCA	1 cut(s)	1005
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	2 cut(s)	111, 662
Mox20I	TGGCCA	1 cut(s)	1005
MroXI	GAANNNNTTC	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	1005
MseI	TTAA	4 cut(s)	378, 419, 767, 804
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	1005
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	673
MspR9I	CCNGG	3 cut(s)	45, 192, 478
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	3 cut(s)	45, 192, 478
MwoI	GCNNNNNNNGC	2 cut(s)	956, 1094
NcoI	CCATGG	1 cut(s)	1006
NdeI	CATATG	1 cut(s)	985
NdeII	GATC	3 cut(s)	7, 93, 310
NlaIII	CATG	9 cut(s)	64, 139, 184, 236, 407, 509, 620, 629, 1010
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	2 cut(s)	72, 509
NspI	RCATGY	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	486, 935
PfoI	TCCNGGA	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	253, 952, 955, 958, 1048, 1087
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
Psp6I	CCWGG	3 cut(s)	43, 190, 476
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	3 cut(s)	43, 190, 476
PspN4I	GGNNCC	1 cut(s)	792
PsrI	GAACNNNNNNTAC	2 cut(s)	1084, 1116
PstI	CTGCAG	1 cut(s)	256
RsaI	GTAC	2 cut(s)	857, 1093
RsaNI	GTAC	2 cut(s)	856, 1092
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	378, 419, 767, 804
SatI	GCNGC	6 cut(s)	252, 951, 954, 957, 1047, 1086
Sau3AI	GATC	3 cut(s)	7, 93, 310
SchI	GAGTC	1 cut(s)	785
ScrFI	CCNGG	3 cut(s)	45, 192, 478
SfaNI	GCATC	1 cut(s)	1072
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	3 cut(s)	86, 263, 377
SmoI	CTYRAG	3 cut(s)	86, 263, 377
SpeI	ACTAGT	1 cut(s)	757
Sse9I	AATT	7 cut(s)	458, 634, 796, 901, 1015, 1024, 1117
SsiI	CCGC	2 cut(s)	230, 950
SspI	AATATT	1 cut(s)	1129
SspMI	CTAG	3 cut(s)	32, 110, 758
StyD4I	CCNGG	3 cut(s)	43, 190, 476
StyI	CCWWGG	2 cut(s)	423, 1006
TaaI	ACNGT	3 cut(s)	286, 822, 860
TaiI	ACGT	2 cut(s)	694, 888
TaqI	TCGA	1 cut(s)	1106
TasI	AATT	7 cut(s)	458, 634, 796, 901, 1015, 1024, 1117
TauI	GCSGC	1 cut(s)	953
TfiI	GAWTC	2 cut(s)	486, 935
Tru1I	TTAA	4 cut(s)	378, 419, 767, 804
Tru9I	TTAA	4 cut(s)	378, 419, 767, 804
TscAI	CASTG	4 cut(s)	213, 223, 313, 733
TseFI	GTSAC	2 cut(s)	72, 509
TseI	GCWGC	5 cut(s)	251, 953, 956, 1046, 1085
Tsp45I	GTSAC	2 cut(s)	72, 509
TspDTI	ATGAA	7 cut(s)	249, 411, 785, 972, 987, 1092, 1137
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	4 cut(s)	213, 223, 313, 733
Vha464I	CTTAAG	1 cut(s)	377
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	1024
XceI	RCATGY	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	3 cut(s)	32, 110, 758
ZraI	GACGTC	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.