Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000965.1

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

47375 .. 53801

Gene Structure 6427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000965.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgattgagagatcacgagtttccctcaaaatgatcaagtatttagcagtagatgataggatgttggacatgggttttgaacctcaaatatcaaagattgttcgacaaatggacatgccttccccaggtgcaagacaaactctgcttttcagtgctacattccctatgagatacaggtggaggcttgcttcagaactcctccaaaaatacatattttcgactattggaatagttgggactggggacaagataaggaatttatgtggtcttcttcttaagaaccagagggaaattgaaactcatggaaagggggacaaagggataacaaatttgaaatcagctgatgtagaggtagctcctgagaatgcttttggtgagactattattgagagtcaagaggagttccttcaaaaaatctctactctcaaggattgcatccgggaagagatggctaaagggactacaaatattgcattcatgactcggacggggattaccgctgctgtagattccagaacatggcatcgccaatttatagagagatcaaatttacattgcacagccatgggtcttgttcgtaggtggaatgatctgttcaactatgtgagccagaatctagcctatggaaattcagtccattcatatagcaggaaatcaaccttatgtggaactgtggaagggatgagtccaccagaagaagtactagaagaaccttcattttggacatgtggagtgatattgggatctggctcttcacatgcttatccagttatgatacgaggctatgacgatgcagctgacacagctttagaaggtttgtttgcggcatctttggaagataagtacacaggaggtcttacgcttgcagagtattttcttgatccagccttggaaccaaaggcccatctctttagaatttcttacagaaaactggtatatgtcgtttatcttgattttcactggaaatatgcaatacctatttattactatatacttcttaacaggccatatggaggagagattgattcagcaaattgtgtagcagttaagagagatttctatgcttttcgtgtggtattcgagactgaagaagatgctacaatagcaaatgaaggtatttatgacccatcagttgcctgtggaacttcaacagatgcctcgacctatggaaaacagttggtttcgttttggtattctaaatgtgctacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

403

Amino Acids

45.53

Weight (kDa)

5.9

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	519
AciI	CCGC	2 cut(s)	498, 824
AclWI	GGATC	2 cut(s)	751, 875
AcsI	RAATTY	5 cut(s)	256, 328, 547, 628, 915
AcuI	CTGAAG	2 cut(s)	174, 1107
AfaI	GTAC	2 cut(s)	702, 845
AfiI	CCNNNNNNNGG	3 cut(s)	125, 519, 1013
AflII	CTTAAG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	6 cut(s)	80, 296, 334, 410, 598, 1149
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	4 cut(s)	341, 356, 797, 806
AluI	AGCT	4 cut(s)	341, 356, 797, 806
Alw26I	GTCTC	2 cut(s)	371, 1076
AlwI	GGATC	2 cut(s)	751, 875
AoxI	GGCC	2 cut(s)	900, 1004
ApeKI	GCWGC	2 cut(s)	500, 794
ApoI	RAATTY	5 cut(s)	256, 328, 547, 628, 915
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspS9I	GGNCC	1 cut(s)	901
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	386
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	487, 806
BccI	CCATC	3 cut(s)	442, 912, 1135
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	371, 1076
BfaI	CTAG	3 cut(s)	617, 704, 1210
BfmI	CTRYAG	1 cut(s)	504
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	501, 795, 825
BlsI	GCNGC	3 cut(s)	502, 796, 826
BmcAI	AGTACT	1 cut(s)	702
Bme1390I	CCNGG	2 cut(s)	126, 440
BmgT120I	GGNCC	1 cut(s)	901
BmiI	GGNNCC	1 cut(s)	894
BmrFI	CCNGG	2 cut(s)	126, 440
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	6 cut(s)	444, 532, 781, 836, 1084, 1144
BmuI	ACTGGG	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	124, 564, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 519, 1013
Bse1I	ACTGG	4 cut(s)	244, 767, 936, 965
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	3 cut(s)	124, 564, 888
BseGI	GGATG	3 cut(s)	66, 435, 687
BseLI	CCNNNNNNNGG	3 cut(s)	125, 519, 1013
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	4 cut(s)	244, 767, 936, 965
BseRI	GAGGAG	3 cut(s)	188, 413, 1029
BseXI	GCAGC	2 cut(s)	487, 806
BshFI	GGCC	2 cut(s)	902, 1006
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	4 cut(s)	250, 257, 326, 472
BslI	CCNNNNNNNGG	3 cut(s)	125, 519, 1013
BsmAI	GTCTC	2 cut(s)	371, 1076
BsmFI	GGGAC	4 cut(s)	250, 257, 326, 472
BsmI	GAATGC	2 cut(s)	370, 473
BsnI	GGCC	2 cut(s)	902, 1006
Bsp143I	GATC	6 cut(s)	11, 33, 542, 589, 743, 880
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	2 cut(s)	498, 824
BspANI	GGCC	2 cut(s)	902, 1006
BspCNI	CTCAG	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	894
BspPI	GGATC	2 cut(s)	751, 875
BspQI	GCTCTTC	1 cut(s)	757
BspTI	CTTAAG	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	553
BsrI	ACTGG	4 cut(s)	244, 767, 936, 965
BssECI	CCNNGG	3 cut(s)	124, 564, 888
BssMI	GATC	6 cut(s)	11, 33, 542, 589, 743, 880
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	564, 888
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	673, 1176
Bst6I	CTCTTC	2 cut(s)	438, 757
BstAFI	CTTAAG	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	186, 864
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	564
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	66, 435, 687
BstKTI	GATC	6 cut(s)	14, 36, 545, 592, 746, 883
BstMAI	GTCTC	2 cut(s)	371, 1076
BstMBI	GATC	6 cut(s)	11, 33, 542, 589, 743, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 1103
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	3 cut(s)	118, 729, 761
BstSCI	CCNGG	2 cut(s)	124, 438
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	487, 806
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	743
BsuRI	GGCC	2 cut(s)	902, 1006
BtgI	CCRYGG	1 cut(s)	564
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	66, 435, 687
BtsIMutI	CAGTG	2 cut(s)	157, 958
Cac8I	GCNNGC	2 cut(s)	186, 864
CciI	TCATGA	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	701, 844
CviAII	CATG	8 cut(s)	70, 115, 302, 478, 519, 565, 726, 758
CviQI	GTAC	2 cut(s)	701, 844
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	6 cut(s)	13, 35, 544, 591, 745, 882
DpnII	GATC	6 cut(s)	11, 33, 542, 589, 743, 880
Eam1104I	CTCTTC	2 cut(s)	438, 757
EarI	CTCTTC	2 cut(s)	438, 757
Eco130I	CCWWGG	2 cut(s)	564, 888
Eco57I	CTGAAG	2 cut(s)	174, 1107
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	564, 888
ErhI	CCWWGG	2 cut(s)	564, 888
FaeI	CATG	8 cut(s)	73, 118, 305, 481, 522, 568, 729, 761
FaqI	GGGAC	4 cut(s)	250, 257, 326, 472
FatI	CATG	8 cut(s)	69, 114, 301, 477, 518, 564, 725, 757
FauNDI	CATATG	1 cut(s)	1009
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	501, 795, 825
FokI	GGATG	3 cut(s)	73, 422, 694
Fsp4HI	GCNGC	3 cut(s)	501, 795, 825
FspBI	CTAG	3 cut(s)	617, 704, 1210
GluI	GCNGC	3 cut(s)	501, 795, 825
HaeIII	GGCC	2 cut(s)	902, 1006
HapII	CCGG	1 cut(s)	439
Hin1II	CATG	8 cut(s)	73, 118, 305, 481, 522, 568, 729, 761
HinfI	GANTC	6 cut(s)	391, 481, 509, 613, 685, 1025
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	689, 846
Hpy188I	TCNGA	2 cut(s)	193, 486
Hpy188III	TCNNGA	8 cut(s)	15, 359, 395, 478, 513, 878, 950, 1081
Hpy8I	GTNNAC	2 cut(s)	689, 846
HpyAV	CCTTC	6 cut(s)	129, 416, 671, 723, 806, 1106
HpyCH4III	ACNGT	2 cut(s)	673, 1176
HpyCH4V	TGCA	7 cut(s)	131, 435, 473, 558, 794, 866, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 1103
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	8 cut(s)	73, 118, 305, 481, 522, 568, 729, 761
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	11, 33, 542, 589, 743, 880
LguI	GCTCTTC	1 cut(s)	757
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	2 cut(s)	487, 806
LweI	GCATC	6 cut(s)	444, 532, 781, 836, 1084, 1144
MaeI	CTAG	3 cut(s)	617, 704, 1210
MalI	GATC	6 cut(s)	13, 35, 544, 591, 745, 882
MboI	GATC	6 cut(s)	11, 33, 542, 589, 743, 880
MboII	GAAGA	9 cut(s)	260, 263, 455, 707, 719, 744, 848, 1100, 1103
MflI	RGATCY	1 cut(s)	743
MluCI	AATT	8 cut(s)	256, 291, 328, 530, 547, 628, 915, 1033
MlyI	GAGTC	3 cut(s)	400, 475, 694
MmeI	TCCRAC	1 cut(s)	45
MseI	TTAA	3 cut(s)	276, 999, 1047
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	3 cut(s)	341, 500, 797
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	2 cut(s)	126, 440
Mva1269I	GAATGC	2 cut(s)	370, 473
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	803, 1103
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	564
NdeI	CATATG	1 cut(s)	1009
NdeII	GATC	6 cut(s)	11, 33, 542, 589, 743, 880
NlaIII	CATG	8 cut(s)	73, 118, 305, 481, 522, 568, 729, 761
NlaIV	GGNNCC	1 cut(s)	894
NspI	RCATGY	3 cut(s)	118, 729, 761
PagI	TCATGA	1 cut(s)	477
PciI	ACATGT	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	757
PctI	GAATGC	2 cut(s)	370, 473
PfeI	GAWTC	3 cut(s)	509, 613, 1025
PflMI	CCANNNNNTGG	1 cut(s)	519
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	502, 796, 826
PleI	GAGTC	3 cut(s)	399, 475, 693
PpsI	GAGTC	3 cut(s)	399, 475, 693
PscI	ACATGT	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	894
PspPI	GGNCC	1 cut(s)	901
PsuI	RGATCY	1 cut(s)	743
PvuII	CAGCTG	2 cut(s)	341, 797
RsaI	GTAC	2 cut(s)	702, 845
RsaNI	GTAC	2 cut(s)	701, 844
RseI	CAYNNNNRTG	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	757
SaqAI	TTAA	3 cut(s)	276, 999, 1047
SatI	GCNGC	3 cut(s)	501, 795, 825
Sau3AI	GATC	6 cut(s)	11, 33, 542, 589, 743, 880
Sau96I	GGNCC	1 cut(s)	901
ScaI	AGTACT	1 cut(s)	702
SchI	GAGTC	3 cut(s)	400, 475, 694
ScrFI	CCNGG	2 cut(s)	126, 440
SfaNI	GCATC	6 cut(s)	444, 532, 781, 836, 1084, 1144
SfcI	CTRYAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	2 cut(s)	275, 425
SmoI	CTYRAG	2 cut(s)	275, 425
Sse9I	AATT	8 cut(s)	256, 291, 328, 530, 547, 628, 915, 1033
SsiI	CCGC	2 cut(s)	498, 824
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	3 cut(s)	617, 704, 1210
StyD4I	CCNGG	2 cut(s)	124, 438
StyI	CCWWGG	2 cut(s)	564, 888
TaaI	ACNGT	2 cut(s)	673, 1176
TaqI	TCGA	4 cut(s)	103, 218, 1080, 1160
TasI	AATT	8 cut(s)	256, 291, 328, 530, 547, 628, 915, 1033
TatI	WGTACW	2 cut(s)	700, 843
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	3 cut(s)	509, 613, 1025
Tru1I	TTAA	3 cut(s)	276, 999, 1047
Tru9I	TTAA	3 cut(s)	276, 999, 1047
TscAI	CASTG	2 cut(s)	157, 965
TseI	GCWGC	2 cut(s)	500, 794
TspDTI	ATGAA	4 cut(s)	466, 630, 705, 1125
TspRI	CASTG	2 cut(s)	157, 965
Van91I	CCANNNNNTGG	1 cut(s)	519
Vha464I	CTTAAG	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	5 cut(s)	256, 328, 547, 628, 915
XceI	RCATGY	3 cut(s)	118, 729, 761
XspI	CTAG	3 cut(s)	617, 704, 1210
ZrmI	AGTACT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.