RchiOBHm_Chr2g0088941

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000684
Physical Location & Seq
Reverse (-)
3266221 .. 3267381
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46424

Sequence Viewer

Length: 399 bp
ATGCACGATAGGAACAAGAAGGCGATGGAGTTAATAGCCAAAGGGTGGAGTGCTTTGAAGGAAGTTGATAGAGTCATCGATTACTGCAAGCTCAATGATCGCCGTCTCATTCCTCTATTAAGGGTGGGGTTGAGTTTTGGTGGTGAAAACCAGGATTCTTTAATAAGGAGTTTGGAGGGTAATGTGGTGATGGGCTTTTTACCTTTTCAACAAGTAAATATTGGTCTCAATGCCGGAGCTGGAGTTAGAATTGGCGAACTAGCAGCAAAGGAGAACTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACAGTGTCCCAAGGGCATGCAAAGCCATGAGGAGCTGCCTTGTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

132

Amino Acids

14.83

Weight (kDa)

9.33

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 45, 324
AfiI CCNNNNNNNGG 3 cut(s) 45, 318, 324
AgsI TTSAA 3 cut(s) 58, 209, 346
AjnI CCWGG 2 cut(s) 150, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 3 cut(s) 91, 239, 384
AluI AGCT 3 cut(s) 91, 239, 384
Alw26I GTCTC 3 cut(s) 110, 230, 287
ApeKI GCWGC 2 cut(s) 263, 384
AsuHPI GGTGA 2 cut(s) 155, 199
BbvI GCAGC 2 cut(s) 275, 371
BccI CCATC 2 cut(s) 19, 184
BceAI ACGGC 1 cut(s) 87
BciT130I CCWGG 2 cut(s) 152, 319
BcoDI GTCTC 3 cut(s) 110, 230, 287
BfaI CTAG 2 cut(s) 260, 290
BisI GCNGC 2 cut(s) 264, 385
BlsI GCNGC 2 cut(s) 265, 386
Bme1390I CCNGG 2 cut(s) 152, 319
BmrFI CCNGG 2 cut(s) 152, 319
BpmI CTGGAG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 318, 324
BseBI CCWGG 2 cut(s) 152, 319
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 359
BseLI CCNNNNNNNGG 3 cut(s) 45, 318, 324
BseRI GAGGAG 1 cut(s) 394
BseXI GCAGC 2 cut(s) 275, 371
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 3 cut(s) 45, 318, 324
BsmAI GTCTC 3 cut(s) 110, 230, 287
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 341
Bso31I GGTCTC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 152, 319
Bst4CI ACNGT 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 89, 367
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 3 cut(s) 110, 230, 287
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 2 cut(s) 152, 319
BstNSI RCATGY 1 cut(s) 369
BstSCI CCNGG 2 cut(s) 150, 317
BstV1I GCAGC 2 cut(s) 275, 371
Bsu15I ATCGAT 1 cut(s) 78
BsuTUI ATCGAT 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 89, 367
ClaI ATCGAT 1 cut(s) 78
CviAII CATG 3 cut(s) 314, 366, 376
CviJI RGCY 7 cut(s) 38, 91, 195, 239, 287, 374, 384
CviKI_1 RGCY 7 cut(s) 38, 91, 195, 239, 287, 374, 384
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 150, 317
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 3 cut(s) 317, 369, 379
FaiI YATR 3 cut(s) 315, 367, 377
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 313, 365, 375
Fnu4HI GCNGC 2 cut(s) 264, 385
Fsp4HI GCNGC 2 cut(s) 264, 385
FspBI CTAG 2 cut(s) 260, 290
GluI GCNGC 2 cut(s) 264, 385
GsuI CTGGAG 1 cut(s) 261
HapII CCGG 1 cut(s) 234
Hin1II CATG 3 cut(s) 317, 369, 379
HinfI GANTC 2 cut(s) 72, 155
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 155, 199
Hpy188III TCNNGA 2 cut(s) 290, 333
HpyAV CCTTC 2 cut(s) 13, 52
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 4, 87, 340, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
Hsp92II CATG 3 cut(s) 317, 369, 379
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 236, 381
LpnPI CCDG 7 cut(s) 137, 164, 225, 247, 304, 331, 346
Lsp1109I GCAGC 2 cut(s) 275, 371
MaeI CTAG 2 cut(s) 260, 290
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MluCI AATT 1 cut(s) 249
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 3 cut(s) 123, 169, 372
MseI TTAA 3 cut(s) 32, 119, 161
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 152, 319
MvaI CCWGG 2 cut(s) 152, 319
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 1 cut(s) 97
NlaIII CATG 3 cut(s) 317, 369, 379
NspI RCATGY 1 cut(s) 369
PaeI GCATGC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 155
PflMI CCANNNNNTGG 2 cut(s) 45, 324
PkrI GCNGC 2 cut(s) 265, 386
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 150, 317
PspGI CCWGG 2 cut(s) 150, 317
SaqAI TTAA 3 cut(s) 32, 119, 161
SatI GCNGC 2 cut(s) 264, 385
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 152, 319
SetI ASST 5 cut(s) 93, 205, 241, 323, 386
SphI GCATGC 1 cut(s) 369
Sse9I AATT 1 cut(s) 249
SspI AATATT 1 cut(s) 220
SspMI CTAG 2 cut(s) 260, 290
StyD4I CCNGG 2 cut(s) 150, 317
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 353
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 249
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 3 cut(s) 32, 119, 161
Tru9I TTAA 3 cut(s) 32, 119, 161
TscAI CASTG 1 cut(s) 358
TseI GCWGC 2 cut(s) 263, 384
TspRI CASTG 1 cut(s) 358
Van91I CCANNNNNTGG 2 cut(s) 45, 324
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 1 cut(s) 369
XspI CTAG 2 cut(s) 260, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.