Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

805730 .. 810353

Gene Structure 4624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1010700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGCGCACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAGAATGTAGGTTCTGGCTCGTCTGGCAATGCTGGTTCAGGAAACTCTGCTGCTTCTGCTCCTAATCGATCCACCTACGTCCCCCCACATCTCCGTAACCGTCCACCTTCCTCGGACCCACCTGCTCCAAGCTACACTGGGCCTGCCAATGATCGAGGTGGCCCAGGTGCGTTCAGTGCACCTCGTTGGGGTGGTCCCAGAAATGACAACACTCGAACTGGATATGGTGGTAATGCTGGTCGCGGTGGTGGTTGGGGAAGCAGAAGTGGTGGTTGGGATGGGAGGGCACGAGAAGTGAACCCCTTTGGAGATGATGACGAAACAGTGCAGCCGTTTAGTGAGCAAGAGAACGGTGGTATTAACTTTGATGCGTATGAAGATATACCGGTTGAGACAAGTGGAGACAATGTTCCCCCTCCCGTGATTACCTTTGCAGATATTGACTTGGGTGACGCACTTAATAAAAATATTCAGAGGTGCAAATATGTGAAACCCACACCTGTGCAGCGTCATGCCATTCCTATCTCCCTTGCAGGCCGAGACTTGATGGCATGTGCCCAAACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCAATCATCAGTGGAATCATGAAGGGACAACCTGCACAGAGACCACCCCGTGGTGCACATACAGTCTATCCGCTTGCTCTCATTCTATCTCCTACTAGGGAGCTTTCAATTCAAATTCATGAGGAAGCTCGAAAATTTTCATATCAAACAGGTGTTAGGGTGGTTGTTGCGTATGGAGGAGCACCAATTAACCAGCAGCTACGGGAGCTTGAAAGAGGTGTTGATATTCTTGTGGCAACTCCTGGAAGACTGGTGGATATGCTGGAGAGAGCTAGGGTTTCGTTGCAGATGATTAGATATTTAGCCCTTGATGAGGCTGATCGAATGCTGGATATGGGTTTTGAACCACAAATAAGGAAAATTGTGCAGCAAATGGACATGCCTCCACCAGGTATGCGACAGACTATGCTATTCAGTGCCACTTTTCCGAAGGAAATACAGAGACTGGCCTCTGATTTTCTTGCAAAGTACATCTTTCTGGCAGTTGGAAGGGTGGGTTCTAGTACTGATTTGATTGTTCAAAGAGTGGAATTTGTTCATGAATCTGATAAAAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCCAATGGTGCACAGGGCAAGCAAGCTCTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCTCTTGAACATTGGCTGTGTATGAATGGTTTTCCTGCAACTACTATTCACGGTGACAGATCACAGCAGGAAAGGGAACAAGCATTGAGGTCATTTAAAAGTGGCAACACTCCGATCTTGGTGGCTACTGATGTGGCCGCACGTGGGCTTGATATCCCTCATGTTGCGCATGTTGTGAACTTTGATCTTCCAAATGACATTGATGATTATGTCCACCGCATTGGTCGTACTGGACGAGCTGGGAAGTCTGGTTTGGCCACTGCCTTCTTTAATGAGAACAATTCGTCGCTCGCTAGGTCTTTGTCAGAATTGATGCAAGAATCAAATCAAGAAGTACCTGCTTGGCTGTCCCGGTACGCAGCTCGAGCTTCATTTGGTGGTGGGAGGAACCGTCGTTCTGGGGGAGGCCGGTTTGGTGGCCGTGACTTCCGAAGGGATTCCTCTTTCAGCAGAGGTGGCAATGATTACTATAGTGGAGGCGGTGGAGGTAGCAGTGGTGGATATGGGGGTGCTTATGGTGGGTACAGTGGAGGAGGATATGGTGCAGGGGTGGCCAGTGCGTGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

620

Amino Acids

66.41

Weight (kDa)

8.72

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	180 - 360	2.2e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	396 - 511	9.8e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc16I	TGCGCA	2 cut(s)	5, 1458
Acc36I	ACCTGC	3 cut(s)	172, 676, 1636
AccB7I	CCANNNNNTGG	2 cut(s)	686, 1851
AccII	CGCG	1 cut(s)	285
AciI	CCGC	5 cut(s)	285, 707, 1428, 1507, 1770
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	4 cut(s)	1425, 1545, 1708, 1842
AcsI	RAATTY	4 cut(s)	31, 750, 770, 1166
AcvI	CACGTG	1 cut(s)	1433
AdeI	CACNNNGTG	1 cut(s)	686
AfaI	GTAC	6 cut(s)	1106, 1141, 1519, 1626, 1646, 1814
AfiI	CCNNNNNNNGG	6 cut(s)	230, 686, 949, 1025, 1434, 1851
AgeI	ACCGGT	1 cut(s)	427
AgsI	TTSAA	6 cut(s)	744, 749, 848, 980, 1157, 1298
AjnI	CCWGG	3 cut(s)	205, 877, 1024
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 330, 1526, 1558
AleI	CACNNNNGTG	1 cut(s)	542
AloI	GAACNNNNNNTCC	4 cut(s)	435, 467, 1669, 1701
Alw21I	GWGCWC	4 cut(s)	223, 694, 820, 1237
Alw26I	GTCTC	6 cut(s)	428, 438, 576, 670, 1072, 1265
Alw44I	GTGCAC	3 cut(s)	219, 690, 1233
AlwI	GGATC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	1081
Ama87I	CYCGRG	1 cut(s)	1653
ApaLI	GTGCAC	3 cut(s)	219, 690, 1233
ApeKI	GCWGC	9 cut(s)	26, 38, 92, 370, 547, 623, 832, 1003, 1649
ApoI	RAATTY	4 cut(s)	31, 750, 770, 1166
AsiGI	ACCGGT	1 cut(s)	427
Asp700I	GAANNNNTTC	3 cut(s)	772, 1170, 1726
AspLEI	GCGC	2 cut(s)	6, 1459
AspS9I	GGNCC	6 cut(s)	157, 182, 203, 236, 1204, 1224
AsuC2I	CCSGG	1 cut(s)	1642
AsuHPI	GGTGA	3 cut(s)	503, 1187, 1355
AvaI	CYCGRG	1 cut(s)	1653
AvaII	GGWCC	3 cut(s)	157, 236, 1204
BaeGI	GKGCMC	5 cut(s)	223, 331, 601, 694, 1237
BalI	TGGCCA	2 cut(s)	1547, 1844
BauI	CACGAG	1 cut(s)	330
BbrPI	CACGTG	1 cut(s)	1433
BbsI	GAAGAC	1 cut(s)	889
Bbv12I	GWGCWC	4 cut(s)	223, 694, 820, 1237
BbvI	GCAGC	9 cut(s)	13, 50, 79, 382, 559, 610, 844, 1015, 1661
BccI	CCATC	2 cut(s)	314, 583
BceAI	ACGGC	2 cut(s)	358, 1695
BciT130I	CCWGG	3 cut(s)	207, 879, 1026
BcnI	CCSGG	1 cut(s)	1642
BcoDI	GTCTC	6 cut(s)	428, 438, 576, 670, 1072, 1265
BfaI	CTAG	4 cut(s)	732, 909, 1137, 1584
BfmI	CTRYAG	2 cut(s)	36, 1759
BfuAI	ACCTGC	3 cut(s)	172, 676, 1636
BmcAI	AGTACT	1 cut(s)	1141
Bme1390I	CCNGG	4 cut(s)	207, 879, 1026, 1642
Bme18I	GGWCC	3 cut(s)	157, 236, 1204
BmeT110I	CYCGRG	1 cut(s)	1653
BmgT120I	GGNCC	6 cut(s)	157, 182, 203, 236, 1204, 1224
BmiI	GGNNCC	3 cut(s)	159, 238, 1679
BmrFI	CCNGG	4 cut(s)	207, 879, 1026, 1642
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	400, 1593
BmuI	ACTGGG	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	889
BpmI	CTGGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	1642
Bsa29I	ATCGAT	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	1433
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	3 cut(s)	153, 205, 685
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	4 cut(s)	435, 465, 1666, 1696
Bsc4I	CCNNNNNNNGG	6 cut(s)	230, 686, 949, 1025, 1434, 1851
Bse118I	RCCGGY	2 cut(s)	427, 1698
Bse1I	ACTGG	7 cut(s)	184, 265, 610, 891, 1086, 1525, 1845
Bse3DI	GCAATG	2 cut(s)	76, 1756
BseBI	CCWGG	3 cut(s)	207, 879, 1026
BseCI	ATCGAT	1 cut(s)	109
BseDI	CCNNGG	3 cut(s)	153, 205, 685
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	6 cut(s)	230, 686, 949, 1025, 1434, 1851
BseMI	GCAATG	2 cut(s)	76, 1756
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	7 cut(s)	184, 265, 610, 891, 1086, 1525, 1845
BseRI	GAGGAG	2 cut(s)	828, 1836
BseSI	GKGCMC	5 cut(s)	223, 331, 601, 694, 1237
BseXI	GCAGC	9 cut(s)	13, 50, 79, 382, 559, 610, 844, 1015, 1661
BseYI	CCCAGC	1 cut(s)	1529
BsgI	GTGCAG	5 cut(s)	389, 566, 654, 1022, 1854
Bsh1236I	CGCG	1 cut(s)	285
BshTI	ACCGGT	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	109
BsiHKAI	GWGCWC	4 cut(s)	223, 694, 820, 1237
BsiHKCI	CYCGRG	1 cut(s)	1653
BsiSI	CCGG	3 cut(s)	428, 1642, 1699
BslFI	GGGAC	4 cut(s)	107, 222, 675, 1624
BslI	CCNNNNNNNGG	6 cut(s)	230, 686, 949, 1025, 1434, 1851
BsmAI	GTCTC	6 cut(s)	428, 438, 576, 670, 1072, 1265
BsmFI	GGGAC	4 cut(s)	107, 222, 675, 1624
BsmI	GAATGC	1 cut(s)	966
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	1653
Bsp1286I	GDGCHC	6 cut(s)	223, 331, 601, 694, 820, 1237
Bsp143I	GATC	6 cut(s)	110, 193, 955, 1349, 1404, 1474
BspACI	CCGC	5 cut(s)	285, 707, 1428, 1507, 1770
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	285
BspHI	TCATGA	3 cut(s)	654, 754, 1174
BspLI	GGNNCC	3 cut(s)	159, 238, 1679
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	3 cut(s)	172, 676, 1636
BspPI	GGATC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	76, 1756
BsrFI	RCCGGY	2 cut(s)	427, 1698
BsrI	ACTGG	7 cut(s)	184, 265, 610, 891, 1086, 1525, 1845
BssAI	RCCGGY	2 cut(s)	427, 1698
BssECI	CCNNGG	3 cut(s)	153, 205, 685
BssMI	GATC	6 cut(s)	110, 193, 955, 1349, 1404, 1474
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	3 cut(s)	207, 879, 1026
Bst4CI	ACNGT	7 cut(s)	143, 367, 395, 700, 1343, 1682, 1817
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	1433
BstC8I	GCNNGC	6 cut(s)	186, 577, 711, 1244, 1248, 1581
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	685
BstENI	CCTNNNNNAGG	2 cut(s)	947, 1023
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	285
BstHHI	GCGC	2 cut(s)	6, 1459
BstKTI	GATC	6 cut(s)	113, 196, 958, 1352, 1407, 1477
BstMAI	GTCTC	6 cut(s)	428, 438, 576, 670, 1072, 1265
BstMBI	GATC	6 cut(s)	110, 193, 955, 1349, 1404, 1474
BstNI	CCWGG	3 cut(s)	207, 879, 1026
BstNSI	RCATGY	3 cut(s)	597, 1018, 1463
BstSCI	CCNGG	4 cut(s)	205, 877, 1024, 1640
BstSFI	CTRYAG	2 cut(s)	36, 1759
BstSLI	GKGCMC	5 cut(s)	223, 331, 601, 694, 1237
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	9 cut(s)	13, 50, 79, 382, 559, 610, 844, 1015, 1661
BstV2I	GAAGAC	1 cut(s)	889
BstXI	CCANNNNNNTGG	1 cut(s)	1511
Bsu15I	ATCGAT	1 cut(s)	109
BsuTUI	ATCGAT	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	2 cut(s)	1548, 1789
BtsIMutI	CAGTG	9 cut(s)	177, 223, 372, 652, 1057, 1548, 1789, 1822, 1852
BveI	ACCTGC	3 cut(s)	172, 676, 1636
Cac8I	GCNNGC	6 cut(s)	186, 577, 711, 1244, 1248, 1581
CaiI	CAGNNNCTG	1 cut(s)	1081
CciI	TCATGA	3 cut(s)	654, 754, 1174
CfoI	GCGC	2 cut(s)	6, 1459
Cfr10I	RCCGGY	2 cut(s)	427, 1698
Cfr13I	GGNCC	6 cut(s)	157, 182, 203, 236, 1204, 1224
ClaI	ATCGAT	1 cut(s)	109
CseI	GACGC	2 cut(s)	503, 539
CsiI	ACCWGGT	1 cut(s)	1024
Csp6I	GTAC	6 cut(s)	1105, 1140, 1518, 1625, 1645, 1813
CspAI	ACCGGT	1 cut(s)	427
CviQI	GTAC	6 cut(s)	1105, 1140, 1518, 1625, 1645, 1813
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	6 cut(s)	112, 195, 957, 1351, 1406, 1476
DpnII	GATC	6 cut(s)	110, 193, 955, 1349, 1404, 1474
DraI	TTTAAA	1 cut(s)	1387
DraIII	CACNNNGTG	1 cut(s)	686
EaeI	YGGCCR	4 cut(s)	1425, 1545, 1708, 1842
Eco31I	GGTCTC	1 cut(s)	670
Eco32I	GATATC	1 cut(s)	1444
Eco47I	GGWCC	3 cut(s)	157, 236, 1204
Eco72I	CACGTG	1 cut(s)	1433
Eco88I	CYCGRG	1 cut(s)	1653
EcoNI	CCTNNNNNAGG	2 cut(s)	947, 1023
EcoRII	CCWGG	3 cut(s)	205, 877, 1024
EcoRV	GATATC	1 cut(s)	1444
FalI	AAGNNNNNCTT	2 cut(s)	1094, 1126
FaqI	GGGAC	4 cut(s)	107, 222, 675, 1624
FokI	GGATG	1 cut(s)	332
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	4 cut(s)	732, 909, 1137, 1584
FspI	TGCGCA	2 cut(s)	5, 1458
GlaI	GCGC	2 cut(s)	5, 1458
GsaI	CCCAGC	1 cut(s)	1533
GsuI	CTGGAG	1 cut(s)	920
HapII	CCGG	3 cut(s)	428, 1642, 1699
HgaI	GACGC	2 cut(s)	503, 539
HhaI	GCGC	2 cut(s)	6, 1459
Hin6I	GCGC	2 cut(s)	4, 1457
HinP1I	GCGC	2 cut(s)	4, 1457
HinfI	GANTC	5 cut(s)	651, 1178, 1289, 1610, 1727
HpaII	CCGG	3 cut(s)	428, 1642, 1699
HphI	GGTGA	3 cut(s)	503, 1187, 1355
Hpy166II	GTNNAC	7 cut(s)	146, 221, 340, 692, 1235, 1468, 1504
Hpy188I	TCNGA	9 cut(s)	157, 516, 1065, 1090, 1183, 1254, 1404, 1597, 1721
Hpy188III	TCNNGA	7 cut(s)	81, 612, 655, 755, 1175, 1295, 1619
Hpy8I	GTNNAC	7 cut(s)	146, 221, 340, 692, 1235, 1468, 1504
Hpy99I	CGWCG	2 cut(s)	1579, 1686
HpyAV	CCTTC	8 cut(s)	159, 652, 1060, 1119, 1217, 1273, 1564, 1716
HpyCH4III	ACNGT	7 cut(s)	143, 367, 395, 700, 1343, 1682, 1817
HpyCH4IV	ACGT	2 cut(s)	120, 1432
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	120, 1432
HspAI	GCGC	2 cut(s)	4, 1457
Kzo9I	GATC	6 cut(s)	110, 193, 955, 1349, 1404, 1474
LmnI	GCTCC	6 cut(s)	106, 172, 736, 815, 841, 1283
Lsp1109I	GCAGC	9 cut(s)	13, 50, 79, 382, 559, 610, 844, 1015, 1661
LweI	GCATC	2 cut(s)	400, 1593
MabI	ACCWGGT	1 cut(s)	1024
MaeI	CTAG	4 cut(s)	732, 909, 1137, 1584
MaeII	ACGT	2 cut(s)	120, 1432
MaeIII	GTNAC	5 cut(s)	137, 491, 1193, 1343, 1712
MalI	GATC	6 cut(s)	112, 195, 957, 1351, 1406, 1476
MboI	GATC	6 cut(s)	110, 193, 955, 1349, 1404, 1474
MboII	GAAGA	4 cut(s)	431, 894, 1202, 1469
MhlI	GDGCHC	6 cut(s)	223, 331, 601, 694, 820, 1237
MlsI	TGGCCA	2 cut(s)	1547, 1844
MluCI	AATT	9 cut(s)	31, 744, 750, 770, 822, 996, 1166, 1570, 1598
MluNI	TGGCCA	2 cut(s)	1547, 1844
MmeI	TCCRAC	1 cut(s)	1102
Mox20I	TGGCCA	2 cut(s)	1547, 1844
MroXI	GAANNNNTTC	3 cut(s)	772, 1170, 1726
MscI	TGGCCA	2 cut(s)	1547, 1844
MseI	TTAA	5 cut(s)	402, 501, 825, 1386, 1560
MslI	CAYNNNNRTG	1 cut(s)	542
Msp20I	TGGCCA	2 cut(s)	1547, 1844
MspA1I	CMGCKG	2 cut(s)	41, 623
MspI	CCGG	3 cut(s)	428, 1642, 1699
MspR9I	CCNGG	4 cut(s)	207, 879, 1026, 1642
Mva1269I	GAATGC	1 cut(s)	966
MvaI	CCWGG	3 cut(s)	207, 879, 1026
MvnI	CGCG	1 cut(s)	285
NciI	CCSGG	1 cut(s)	1642
NdeII	GATC	6 cut(s)	110, 193, 955, 1349, 1404, 1474
NlaIV	GGNNCC	3 cut(s)	159, 238, 1679
NmeAIII	GCCGAG	1 cut(s)	605
NmuCI	GTSAC	4 cut(s)	491, 1193, 1343, 1712
NsbI	TGCGCA	2 cut(s)	5, 1458
NspI	RCATGY	3 cut(s)	597, 1018, 1463
OliI	CACNNNNGTG	1 cut(s)	542
PaeR7I	CTCGAG	1 cut(s)	1653
PagI	TCATGA	3 cut(s)	654, 754, 1174
PaqCI	CACCTGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	1522
PctI	GAATGC	1 cut(s)	966
PdmI	GAANNNNTTC	3 cut(s)	772, 1170, 1726
PfeI	GAWTC	5 cut(s)	651, 1178, 1289, 1610, 1727
PflMI	CCANNNNNTGG	2 cut(s)	686, 1851
PfoI	TCCNGGA	1 cut(s)	877
PinAI	ACCGGT	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	1433
PmlI	CACGTG	1 cut(s)	1433
Ppu21I	YACGTR	1 cut(s)	1433
Psp6I	CCWGG	3 cut(s)	205, 877, 1024
PspCI	CACGTG	1 cut(s)	1433
PspFI	CCCAGC	1 cut(s)	1529
PspGI	CCWGG	3 cut(s)	205, 877, 1024
PspN4I	GGNNCC	3 cut(s)	159, 238, 1679
PspPI	GGNCC	6 cut(s)	157, 182, 203, 236, 1204, 1224
PspXI	VCTCGAGB	1 cut(s)	1653
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	1081
PvuII	CAGCTG	2 cut(s)	41, 623
RsaI	GTAC	6 cut(s)	1106, 1141, 1519, 1626, 1646, 1814
RsaNI	GTAC	6 cut(s)	1105, 1140, 1518, 1625, 1645, 1813
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	5 cut(s)	402, 501, 825, 1386, 1560
Sau3AI	GATC	6 cut(s)	110, 193, 955, 1349, 1404, 1474
Sau96I	GGNCC	6 cut(s)	157, 182, 203, 236, 1204, 1224
ScaI	AGTACT	1 cut(s)	1141
ScrFI	CCNGG	4 cut(s)	207, 879, 1026, 1642
SduI	GDGCHC	6 cut(s)	223, 331, 601, 694, 820, 1237
SexAI	ACCWGGT	1 cut(s)	1024
SfaNI	GCATC	2 cut(s)	400, 1593
SfcI	CTRYAG	2 cut(s)	36, 1759
Sfr274I	CTCGAG	1 cut(s)	1653
SinI	GGWCC	3 cut(s)	157, 236, 1204
SlaI	CTCGAG	1 cut(s)	1653
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	1653
SmoI	CTYRAG	1 cut(s)	1653
Sse9I	AATT	9 cut(s)	31, 744, 750, 770, 822, 996, 1166, 1570, 1598
SsiI	CCGC	5 cut(s)	285, 707, 1428, 1507, 1770
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	4 cut(s)	732, 909, 1137, 1584
StyD4I	CCNGG	4 cut(s)	205, 877, 1024, 1640
TaaI	ACNGT	7 cut(s)	143, 367, 395, 700, 1343, 1682, 1817
TaiI	ACGT	2 cut(s)	123, 1435
TaqI	TCGA	6 cut(s)	109, 196, 256, 766, 958, 1654
TasI	AATT	9 cut(s)	31, 744, 750, 770, 822, 996, 1166, 1570, 1598
TatI	WGTACW	2 cut(s)	1104, 1139
TauI	GCSGC	1 cut(s)	1430
TfiI	GAWTC	5 cut(s)	651, 1178, 1289, 1610, 1727
Tru1I	TTAA	5 cut(s)	402, 501, 825, 1386, 1560
Tru9I	TTAA	5 cut(s)	402, 501, 825, 1386, 1560
TscAI	CASTG	9 cut(s)	184, 223, 372, 652, 1057, 1555, 1789, 1822, 1852
TseFI	GTSAC	4 cut(s)	491, 1193, 1343, 1712
TseI	GCWGC	9 cut(s)	26, 38, 92, 370, 547, 623, 832, 1003, 1649
Tsp45I	GTSAC	4 cut(s)	491, 1193, 1343, 1712
TspDTI	ATGAA	9 cut(s)	432, 671, 743, 765, 1163, 1191, 1202, 1328, 1650
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	9 cut(s)	184, 223, 372, 652, 1057, 1555, 1789, 1822, 1852
Van91I	CCANNNNNTGG	2 cut(s)	686, 1851
VneI	GTGCAC	3 cut(s)	219, 690, 1233
VpaK11BI	GGWCC	3 cut(s)	157, 236, 1204
XagI	CCTNNNNNAGG	2 cut(s)	947, 1023
XapI	RAATTY	4 cut(s)	31, 750, 770, 1166
XceI	RCATGY	3 cut(s)	597, 1018, 1463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	1653
XmnI	GAANNNNTTC	3 cut(s)	772, 1170, 1726
XspI	CTAG	4 cut(s)	732, 909, 1137, 1584
ZrmI	AGTACT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.