Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Reverse (-)

3198662 .. 3201500

Gene Structure 2839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCCGGCCGGGACTTGATGGCTTGTGCTCAGAGCGGGTCCGGAAAGACGGCGGCTTTTTGCTTCCCCATTATCAGTGGTGTGTTGACCAAGTGTGTGGAGAGGTCTCAGAGTAATGGTGGTGATGGTTGGACTGTGTTTCCCAGAGCTCTCATTTTGTCTCCGACGAGAGAGTTGACCAGTCAGATATTTGTGGAAGCTGGAAAGTTTGCTTATCAGAGTGGAGCAAAAATGGCTGTTGTTTATGGTGGAGCGCCGATGGGTCAGCAGCTTCGTGATTTGGAGAGAGGTGTTGATATCCTAGTCGCCACTCCAGAGCGCTTAGTGGACATGATTGAAAGGTCACGAGTTTCACTCAAGATGATCAAATACTTGGCACTAGATGAGGCTGATAGGATGTTGGACATGGGTTTTGAACCTCAAAGAAGGAAGATAGTTCAAAGAATGTCAGCCTCCCCCAGGTGCAAGAGTGCGATGCACGATAGGAACAAGAAGGCGATGGAGTTAATAGCCAAAGGGTGGAGTGCTTTGAAGGAAGTTGATAGAGTCATCGATTACTGCAAGCTCAATGATCGCCGTCTCATTCCTCTATTAAGGGCAGCAAAGGAGAACTTTGAGTTGGCTCTAGAGACTGACAACTCAAATACCCATGCCAGGTATTGGTTGTCCAGATTGCATTTGAAATACAGTGTCCCAAGGGCATGCAAAGCCATGAGGAGCTGCCTTGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

244

Amino Acids

27.35

Weight (kDa)

9.6

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	2 - 152	6.9e-36	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	519, 660
AccBSI	CCGCTC	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	2 cut(s)	36, 53
AcoI	YGGCCR	2 cut(s)	3, 7
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	459, 519, 654, 660
AgsI	TTSAA	5 cut(s)	338, 416, 440, 532, 682
AjnI	CCWGG	2 cut(s)	458, 653
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	5 cut(s)	149, 200, 271, 565, 720
AluI	AGCT	5 cut(s)	149, 200, 271, 565, 720
Alw21I	GWGCWC	2 cut(s)	31, 151
Alw26I	GTCTC	4 cut(s)	111, 165, 584, 623
Aor13HI	TCCGGA	1 cut(s)	41
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	2 cut(s)	3, 7
ApeKI	GCWGC	3 cut(s)	268, 599, 720
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspLEI	GCGC	2 cut(s)	256, 321
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	31, 151
BbvI	GCAGC	3 cut(s)	280, 611, 707
BccI	CCATC	4 cut(s)	13, 119, 253, 493
BceAI	ACGGC	2 cut(s)	66, 561
BciT130I	CCWGG	2 cut(s)	460, 655
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	4 cut(s)	111, 165, 584, 623
BfaI	CTAG	3 cut(s)	302, 380, 626
BfoI	RGCGCY	2 cut(s)	257, 322
BisI	GCNGC	4 cut(s)	54, 269, 600, 721
BlsI	GCNGC	4 cut(s)	55, 270, 601, 722
Bme1390I	CCNGG	3 cut(s)	11, 460, 655
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	3 cut(s)	11, 460, 655
BmsI	GCATC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	339, 371
BpmI	CTGGAG	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	458, 695
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	4 cut(s)	459, 519, 654, 660
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	460, 655
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	458, 695
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	459, 519, 654, 660
BseMII	CTCAG	2 cut(s)	44, 122
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	730
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	3 cut(s)	280, 611, 707
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	5, 9
BshVI	ATCGAT	1 cut(s)	552
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	31, 151
BsiSI	CCGG	3 cut(s)	6, 10, 42
BslFI	GGGAC	2 cut(s)	26, 677
BslI	CCNNNNNNNGG	4 cut(s)	459, 519, 654, 660
BsmAI	GTCTC	4 cut(s)	111, 165, 584, 623
BsmBI	CGTCTC	1 cut(s)	584
BsmFI	GGGAC	2 cut(s)	26, 677
BsnI	GGCC	2 cut(s)	5, 9
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	31, 151
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	363, 571
BspACI	CCGC	2 cut(s)	36, 53
BspANI	GGCC	2 cut(s)	5, 9
BspCNI	CTCAG	2 cut(s)	43, 121
BspDI	ATCGAT	1 cut(s)	552
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	458, 695
BssMI	GATC	2 cut(s)	363, 571
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	695
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	460, 655
Bst4CI	ACNGT	2 cut(s)	136, 689
BstC8I	GCNNGC	3 cut(s)	7, 563, 703
BstDEI	CTNAG	3 cut(s)	30, 108, 322
BstENI	CCTNNNNNAGG	1 cut(s)	457
BstF5I	GGATG	1 cut(s)	402
BstH2I	RGCGCY	2 cut(s)	257, 322
BstHHI	GCGC	2 cut(s)	256, 321
BstKTI	GATC	2 cut(s)	366, 574
BstMAI	GTCTC	4 cut(s)	111, 165, 584, 623
BstMBI	GATC	2 cut(s)	363, 571
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 707
BstNI	CCWGG	2 cut(s)	460, 655
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	3 cut(s)	9, 458, 653
BstV1I	GCAGC	3 cut(s)	280, 611, 707
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstZI	CGGCCG	1 cut(s)	7
Bsu15I	ATCGAT	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	5, 9
BsuTUI	ATCGAT	1 cut(s)	552
BtgZI	GCGATG	2 cut(s)	488, 512
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	82, 694
Cac8I	GCNNGC	3 cut(s)	7, 563, 703
CfoI	GCGC	2 cut(s)	256, 321
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	552
CviAII	CATG	5 cut(s)	331, 406, 650, 702, 712
DdeI	CTNAG	3 cut(s)	30, 108, 322
DpnI	GATC	2 cut(s)	365, 573
DpnII	GATC	2 cut(s)	363, 571
EaeI	YGGCCR	2 cut(s)	3, 7
EagI	CGGCCG	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	149
EclXI	CGGCCG	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	695
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	39
Eco47III	AGCGCT	1 cut(s)	320
Eco52I	CGGCCG	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	458, 653
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	695
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	5 cut(s)	334, 409, 653, 705, 715
FaiI	YATR	6 cut(s)	246, 332, 407, 651, 703, 713
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	2 cut(s)	26, 677
FatI	CATG	5 cut(s)	330, 405, 649, 701, 711
FauI	CCCGC	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	54, 269, 600, 721
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	151
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	54, 269, 600, 721
FspBI	CTAG	3 cut(s)	302, 380, 626
GlaI	GCGC	2 cut(s)	255, 320
GluI	GCNGC	4 cut(s)	54, 269, 600, 721
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	2 cut(s)	257, 322
HaeIII	GGCC	2 cut(s)	5, 9
HapII	CCGG	3 cut(s)	6, 10, 42
HhaI	GCGC	2 cut(s)	256, 321
Hin1II	CATG	5 cut(s)	334, 409, 653, 705, 715
Hin6I	GCGC	2 cut(s)	254, 319
HinP1I	GCGC	2 cut(s)	254, 319
HincII	GTYRAC	2 cut(s)	87, 177
HindII	GTYRAC	2 cut(s)	87, 177
HinfI	GANTC	1 cut(s)	546
HpaII	CCGG	3 cut(s)	6, 10, 42
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	3 cut(s)	87, 177, 328
Hpy188I	TCNGA	5 cut(s)	33, 111, 165, 186, 219
Hpy188III	TCNNGA	7 cut(s)	42, 275, 314, 345, 358, 626, 669
Hpy8I	GTNNAC	3 cut(s)	87, 177, 328
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	420, 487, 526
HpyCH4III	ACNGT	2 cut(s)	136, 689
HpyCH4V	TGCA	5 cut(s)	465, 478, 561, 676, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 707
HpyF3I	CTNAG	3 cut(s)	30, 108, 322
Hsp92II	CATG	5 cut(s)	334, 409, 653, 705, 715
HspAI	GCGC	2 cut(s)	254, 319
Kpn2I	TCCGGA	1 cut(s)	41
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	363, 571
LmnI	GCTCC	3 cut(s)	224, 251, 717
Lsp1109I	GCAGC	3 cut(s)	280, 611, 707
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	3 cut(s)	302, 380, 626
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	2 cut(s)	365, 573
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	2 cut(s)	363, 571
MboII	GAAGA	1 cut(s)	442
MhlI	GDGCHC	2 cut(s)	31, 151
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	3 cut(s)	110, 188, 381
MnlI	CCTC	7 cut(s)	96, 281, 379, 429, 463, 597, 708
MroI	TCCGGA	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	2 cut(s)	506, 593
MspI	CCGG	3 cut(s)	6, 10, 42
MspR9I	CCNGG	3 cut(s)	11, 460, 655
MvaI	CCWGG	2 cut(s)	460, 655
MwoI	GCNNNNNNNGC	2 cut(s)	233, 707
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	363, 571
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	5 cut(s)	334, 409, 653, 705, 715
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	342
NspI	RCATGY	1 cut(s)	705
PaeI	GCATGC	1 cut(s)	705
PdiI	GCCGGC	1 cut(s)	7
PflMI	CCANNNNNTGG	2 cut(s)	519, 660
PkrI	GCNGC	4 cut(s)	55, 270, 601, 722
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	458, 653
PspGI	CCWGG	2 cut(s)	458, 653
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	39
RigI	GGCCGGCC	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	506, 593
SatI	GCNGC	4 cut(s)	54, 269, 600, 721
Sau3AI	GATC	2 cut(s)	363, 571
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	3 cut(s)	11, 460, 655
SduI	GDGCHC	2 cut(s)	31, 151
SfaNI	GCATC	1 cut(s)	465
SinI	GGWCC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	705
SsiI	CCGC	2 cut(s)	36, 53
SspMI	CTAG	3 cut(s)	302, 380, 626
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	3 cut(s)	9, 458, 653
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	2 cut(s)	136, 689
TaqI	TCGA	1 cut(s)	552
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	506, 593
Tru9I	TTAA	2 cut(s)	506, 593
TscAI	CASTG	2 cut(s)	82, 694
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	3 cut(s)	268, 599, 720
Tsp45I	GTSAC	1 cut(s)	342
TspRI	CASTG	2 cut(s)	82, 694
Van91I	CCANNNNNTGG	2 cut(s)	519, 660
VpaK11BI	GGWCC	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	457
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	1 cut(s)	705
XspI	CTAG	3 cut(s)	302, 380, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.