Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

21639978 .. 21643795

Gene Structure 3818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGAGTGCATCATGGGCAGATGTGGCTGATTCAGAGAAGGCCGTTTCTCAGTCAAAGCCTCCTTATGTTCCCCCACACCTACGGAACAGGCCATCAGAGCCTGTTGCTGCTCCTTTGCCACAAAATGATCATGCAGGGTATGGTGGTCAACCAGCTGGGTCTCGTTGGGCTCCTCCTAGCAGTGGGGGTGGTGGTGCCAGCGGCGGTGGCTATAGGAATGATGGAGGGCGCACTGGCTATGGTTATGGTGCTGGAGGAGGAGGTGGTGGTGGTGGTGGCTGGAACAACAGAAGTGGAGGGTGGGACCGTAGGGAACGTGAAGTAAACCCATTTGGAGATGATGCTGAGTTAGAACCGGTCTTTACAGAGCAGGAGAATACTGGCATTAATTTTGATGCCTATGAAGATATTCCAGTTGAGACCAGTGGGGGAGACGTGCCCCCTCCTGTTAACACATTTGCTGACATAGATCTTGGGGATGCATTAAATCTGAACATCCGGAGGTGCAAGTATGTGAGGCCAACACCGGTACAGCGTCATGCTATTCCAATACTGCTTGCAGAGAGAGATTTGATGGCCTGTGCCCAGACTGGGTCTGGGAAGACTGCTGCTTTTTGCTTTCCAATAATTAGTGGAATCATGAAAGATCAGCATGTAGAAAGACCCCGTGGTTCACGGGCGGTTTACCCTTTTGCAGTCATCCTCTCACCAACAAGGGAATTGGCATGCCAGATACATGATGAAGCCAAAAAATTCTCCTACCAAACTGGTGTGAAGGTTGTTGTTGCTTATGGAGGAACACCCATTCACCAGCAGCTCAGGGAACTCGAGAGGGGATGTGATATCCTTGTGGCAACTCCTGGCCGGTTAAATGATTTGCTTGAAAGAGCTAGAGTCTCAATGCAGATGATTAGGTTTTTAGCTCTAGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAGCCACAGATTAGAAAGATTGTTGAGCAGATGGACATGCCTCCACGTGGGGTGAGACAGACAATGCTGTTCAGTGCTACATTTCCAAGTCAGATTCAGAGACTTGCAGCTGATTTCATGTCAAACTATATATTTTTGGCTGTGGGAAGAGTTGGTTCAAGCACTGATTTAATTACCCAAAGGGTTGAGTTTGTCCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTGCTTCACGCGCAAAGAGAGACCCAAGACAAGCAATCATTGACATTAGTTTTTGTGGAGACAAAGAGGGGAGCTGATACTTTGGAAAATTGGCTGTGCATGAATGAGTTTCCAGCAACCTCCATTCATGGCGATAGAACACAACAGGAAAGAGAAGTGGCACTGAGGTCCTTCAAAACTGGGAGGACACCTATTTTGGTTGCAACAGACGTGGCAGCACGTGGTCTTGACATTCCCCACGTGGCTCATGTTGTAAACTTCGATCTACCAAATGACATTGATGACTATGTCCACCGTATCGGACGAACAGGACGTGCAGGCAAATCTGGAATAGCAACTGCCTTCTTCAACGAGAACAATGCACAACTGGCTAGGTCGCTTGCTGAGCTAATGCAAGAAGCCAATCAAGAGGTCCCCGAGTGGCTCACACGATATGCTTCACGTGCTTCATTTGGTGGTGGTAAGAAACGGTCTGGTGGTCGGTTTGGTGGCCGTGACTTCAGAAGGGAAGGCTCTTACAGTAGAGGAGGAGGCGGCGGCGGCGGAGGAGGCGGCAGTGATTACTATGGCGGAGGAGGCTATGGTGGTGGTGGATACGGTGGTGCTCCAAGCGGTGGGTATGGTGCTGGAGTGACCAGTGCTTGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

612

Amino Acids

66.02

Weight (kDa)

6.23

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	175 - 354	2.8e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	390 - 503	1.9e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1197
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	3 cut(s)	1183, 1802, 1830
AccII	CGCG	1 cut(s)	1199
AccIII	TCCGGA	1 cut(s)	498
AcoI	YGGCCR	2 cut(s)	862, 1678
AcsI	RAATTY	1 cut(s)	752
AcuI	CTGAAG	1 cut(s)	1672
AcvI	CACGTG	4 cut(s)	1007, 1409, 1429, 1631
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	6 cut(s)	182, 591, 1007, 1183, 1802, 1830
AgeI	ACCGGT	2 cut(s)	355, 526
AgsI	TTSAA	4 cut(s)	884, 1119, 1363, 1537
AjiI	CACGTC	3 cut(s)	436, 1399, 1502
AjnI	CCWGG	1 cut(s)	859
AluBI	AGCT	7 cut(s)	155, 817, 890, 923, 1070, 1262, 1576
AluI	AGCT	7 cut(s)	155, 817, 890, 923, 1070, 1262, 1576
Alw21I	GWGCWC	1 cut(s)	1795
Alw26I	GTCTC	8 cut(s)	165, 413, 426, 901, 1009, 1054, 1202, 1241
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	2 cut(s)	827, 1604
Aor13HI	TCCGGA	1 cut(s)	498
AoxI	GGCC	6 cut(s)	39, 89, 518, 576, 862, 1678
ApeKI	GCWGC	5 cut(s)	107, 608, 814, 1067, 1403
ApoI	RAATTY	1 cut(s)	752
ArsI	GACNNNNNNTTYG	4 cut(s)	941, 973, 1366, 1398
AseI	ATTAAT	1 cut(s)	387
AsiGI	ACCGGT	2 cut(s)	355, 526
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	231, 1201
AspS9I	GGNCC	4 cut(s)	304, 1186, 1356, 1600
AsuHPI	GGTGA	3 cut(s)	699, 800, 1024
AvaI	CYCGRG	2 cut(s)	827, 1604
AvaII	GGWCC	4 cut(s)	304, 1186, 1356, 1600
BaeGI	GKGCMC	2 cut(s)	441, 586
BaeI	ACNNNNGTAYC	2 cut(s)	1774, 1807
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	172
BbrPI	CACGTG	4 cut(s)	1007, 1409, 1429, 1631
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	1795
BbvI	GCAGC	5 cut(s)	94, 595, 826, 1079, 1415
BccI	CCATC	5 cut(s)	100, 215, 568, 985, 1185
BceAI	ACGGC	2 cut(s)	26, 1665
BcgI	CGANNNNNNTGC	2 cut(s)	1529, 1563
BciT130I	CCWGG	1 cut(s)	861
BciVI	GTATCC	1 cut(s)	1775
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	8 cut(s)	165, 413, 426, 901, 1009, 1054, 1202, 1241
BfaI	CTAG	4 cut(s)	177, 891, 926, 1560
BfmI	CTRYAG	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	1197
BfuI	GTATCC	1 cut(s)	1775
BglII	AGATCT	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	1572
Bme1390I	CCNGG	1 cut(s)	861
Bme18I	GGWCC	4 cut(s)	304, 1186, 1356, 1600
BmeT110I	CYCGRG	2 cut(s)	827, 1604
BmgBI	CACGTC	3 cut(s)	436, 1399, 1502
BmgT120I	GGNCC	4 cut(s)	304, 1186, 1356, 1600
BmiI	GGNNCC	4 cut(s)	171, 196, 305, 1602
BmrFI	CCNGG	1 cut(s)	861
BmrI	ACTGGG	2 cut(s)	600, 1377
BmsI	GCATC	5 cut(s)	17, 331, 385, 469, 933
BmuI	ACTGGG	2 cut(s)	600, 1377
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	2 cut(s)	273, 1836
Bpu10I	CCTNAGC	1 cut(s)	818
Bpu1102I	GCTNAGC	1 cut(s)	1572
BsaAI	YACGTR	4 cut(s)	1007, 1409, 1429, 1631
BsaI	GGTCTC	3 cut(s)	165, 413, 1202
BsaJI	CCNNGG	1 cut(s)	667
BsaWI	WCCGGW	3 cut(s)	355, 498, 526
Bsc4I	CCNNNNNNNGG	6 cut(s)	182, 591, 1007, 1183, 1802, 1830
Bse118I	RCCGGY	3 cut(s)	355, 526, 864
Bse1I	ACTGG	9 cut(s)	238, 385, 413, 423, 595, 772, 1372, 1560, 1824
BseAI	TCCGGA	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	667
BseGI	GGATG	5 cut(s)	484, 495, 699, 842, 948
BseLI	CCNNNNNNNGG	6 cut(s)	182, 591, 1007, 1183, 1802, 1830
BseMII	CTCAG	5 cut(s)	62, 336, 832, 1343, 1563
BseNI	ACTGG	9 cut(s)	238, 385, 413, 423, 595, 772, 1372, 1560, 1824
BseRI	GAGGAG	7 cut(s)	162, 270, 273, 1728, 1731, 1749, 1776
BseSI	GKGCMC	2 cut(s)	441, 586
BseXI	GCAGC	5 cut(s)	94, 595, 826, 1079, 1415
BseYI	CCCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	1524
Bsh1236I	CGCG	1 cut(s)	1199
BshFI	GGCC	6 cut(s)	41, 91, 520, 578, 864, 1680
BshNI	GGYRCC	1 cut(s)	194
BshTI	ACCGGT	2 cut(s)	355, 526
BsiHKAI	GWGCWC	1 cut(s)	1795
BsiHKCI	CYCGRG	2 cut(s)	827, 1604
BsiSI	CCGG	4 cut(s)	356, 499, 527, 865
BslFI	GGGAC	2 cut(s)	317, 1586
BslI	CCNNNNNNNGG	6 cut(s)	182, 591, 1007, 1183, 1802, 1830
BsmAI	GTCTC	8 cut(s)	165, 413, 426, 901, 1009, 1054, 1202, 1241
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	317, 1586
BsnI	GGCC	6 cut(s)	41, 91, 520, 578, 864, 1680
Bso31I	GGTCTC	3 cut(s)	165, 413, 1202
BsoBI	CYCGRG	2 cut(s)	827, 1604
Bsp1286I	GDGCHC	4 cut(s)	172, 441, 586, 1795
Bsp13I	TCCGGA	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	127, 469, 646, 1450
Bsp1720I	GCTNAGC	1 cut(s)	1572
BspANI	GGCC	6 cut(s)	41, 91, 520, 578, 864, 1680
BspCNI	CTCAG	5 cut(s)	61, 337, 831, 1344, 1564
BspEI	TCCGGA	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	1199
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	4 cut(s)	171, 196, 305, 1602
BspMI	ACCTGC	1 cut(s)	1197
BspT107I	GGYRCC	1 cut(s)	194
BspTNI	GGTCTC	3 cut(s)	165, 413, 1202
BsrFI	RCCGGY	3 cut(s)	355, 526, 864
BsrI	ACTGG	9 cut(s)	238, 385, 413, 423, 595, 772, 1372, 1560, 1824
BssAI	RCCGGY	3 cut(s)	355, 526, 864
BssECI	CCNNGG	1 cut(s)	667
BssMI	GATC	4 cut(s)	127, 469, 646, 1450
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	5 cut(s)	308, 1484, 1659, 1709, 1787
Bst6I	CTCTTC	1 cut(s)	1102
BstBAI	YACGTR	4 cut(s)	1007, 1409, 1429, 1631
BstC8I	GCNNGC	5 cut(s)	199, 558, 727, 1507, 1569
BstDEI	CTNAG	5 cut(s)	48, 345, 818, 1352, 1572
BstDSI	CCRYGG	1 cut(s)	667
BstF5I	GGATG	5 cut(s)	484, 495, 699, 842, 948
BstFNI	CGCG	1 cut(s)	1199
BstHHI	GCGC	2 cut(s)	231, 1201
BstKTI	GATC	4 cut(s)	130, 472, 649, 1453
BstMAI	GTCTC	8 cut(s)	165, 413, 426, 901, 1009, 1054, 1202, 1241
BstMBI	GATC	4 cut(s)	127, 469, 646, 1450
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	3 cut(s)	656, 729, 1000
BstSCI	CCNGG	1 cut(s)	859
BstSFI	CTRYAG	1 cut(s)	211
BstSLI	GKGCMC	2 cut(s)	441, 586
BstUI	CGCG	1 cut(s)	1199
BstV1I	GCAGC	5 cut(s)	94, 595, 826, 1079, 1415
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	1775
BsuRI	GGCC	6 cut(s)	41, 91, 520, 578, 864, 1680
BtgI	CCRYGG	1 cut(s)	667
BtrI	CACGTC	3 cut(s)	436, 1399, 1502
BtsCI	GGATG	5 cut(s)	484, 495, 699, 842, 948
BtsI	GCAGTG	2 cut(s)	187, 1750
BtsIMutI	CAGTG	8 cut(s)	187, 231, 430, 1039, 1122, 1349, 1750, 1831
BveI	ACCTGC	1 cut(s)	1197
Cac8I	GCNNGC	5 cut(s)	199, 558, 727, 1507, 1569
CaiI	CAGNNNCTG	1 cut(s)	101
CciI	TCATGA	1 cut(s)	639
CfoI	GCGC	2 cut(s)	231, 1201
Cfr10I	RCCGGY	3 cut(s)	355, 526, 864
Cfr13I	GGNCC	4 cut(s)	304, 1186, 1356, 1600
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	530
CspAI	ACCGGT	2 cut(s)	355, 526
CspCI	CAANNNNNGTGG	4 cut(s)	274, 309, 1380, 1415
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	5 cut(s)	48, 345, 818, 1352, 1572
DpnI	GATC	4 cut(s)	129, 471, 648, 1452
DpnII	GATC	4 cut(s)	127, 469, 646, 1450
EaeI	YGGCCR	2 cut(s)	862, 1678
Eam1104I	CTCTTC	1 cut(s)	1102
EarI	CTCTTC	1 cut(s)	1102
EciI	GGCGGA	2 cut(s)	1746, 1773
Eco24I	GRGCYC	1 cut(s)	172
Eco31I	GGTCTC	3 cut(s)	165, 413, 1202
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	4 cut(s)	304, 1186, 1356, 1600
Eco57I	CTGAAG	1 cut(s)	1672
Eco72I	CACGTG	4 cut(s)	1007, 1409, 1429, 1631
Eco88I	CYCGRG	2 cut(s)	827, 1604
EcoO109I	RGGNCCY	2 cut(s)	1356, 1600
EcoRII	CCWGG	1 cut(s)	859
EcoRV	GATATC	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	426
FaqI	GGGAC	2 cut(s)	317, 1586
FbaI	TGATCA	1 cut(s)	127
FokI	GGATG	5 cut(s)	482, 491, 686, 849, 955
FriOI	GRGCYC	1 cut(s)	172
FspBI	CTAG	4 cut(s)	177, 891, 926, 1560
GlaI	GCGC	2 cut(s)	230, 1200
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	2 cut(s)	273, 1836
HaeIII	GGCC	6 cut(s)	41, 91, 520, 578, 864, 1680
HapII	CCGG	4 cut(s)	356, 499, 527, 865
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	2 cut(s)	231, 1201
Hin6I	GCGC	2 cut(s)	229, 1199
HinP1I	GCGC	2 cut(s)	229, 1199
HincII	GTYRAC	2 cut(s)	149, 451
HindII	GTYRAC	2 cut(s)	149, 451
HinfI	GANTC	5 cut(s)	29, 636, 894, 1054, 1160
HpaI	GTTAAC	1 cut(s)	451
HpaII	CCGG	4 cut(s)	356, 499, 527, 865
HphI	GGTGA	3 cut(s)	699, 800, 1024
Hpy166II	GTNNAC	7 cut(s)	149, 325, 451, 674, 685, 1444, 1480
Hpy188I	TCNGA	8 cut(s)	34, 97, 492, 1053, 1059, 1165, 1490, 1691
Hpy188III	TCNNGA	7 cut(s)	499, 640, 829, 926, 1415, 1515, 1595
Hpy8I	GTNNAC	7 cut(s)	149, 325, 451, 674, 685, 1444, 1480
HpyAV	CCTTC	6 cut(s)	31, 769, 1369, 1540, 1686, 1691
HpyCH4III	ACNGT	5 cut(s)	308, 1484, 1659, 1709, 1787
HpyCH4IV	ACGT	8 cut(s)	316, 435, 1006, 1398, 1408, 1428, 1501, 1630
HpyF3I	CTNAG	5 cut(s)	48, 345, 818, 1352, 1572
HpySE526I	ACGT	8 cut(s)	316, 435, 1006, 1398, 1408, 1428, 1501, 1630
HspAI	GCGC	2 cut(s)	229, 1199
Kpn2I	TCCGGA	1 cut(s)	498
Ksp22I	TGATCA	1 cut(s)	127
KspAI	GTTAAC	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	127, 469, 646, 1450
LmnI	GCTCC	4 cut(s)	115, 175, 1259, 1798
Lsp1109I	GCAGC	5 cut(s)	94, 595, 826, 1079, 1415
LweI	GCATC	5 cut(s)	17, 331, 385, 469, 933
MaeI	CTAG	4 cut(s)	177, 891, 926, 1560
MaeII	ACGT	8 cut(s)	316, 435, 1006, 1398, 1408, 1428, 1501, 1630
MaeIII	GTNAC	2 cut(s)	1682, 1819
MalI	GATC	4 cut(s)	129, 471, 648, 1452
MboI	GATC	4 cut(s)	127, 469, 646, 1450
MboII	GAAGA	4 cut(s)	416, 613, 1119, 1525
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	4 cut(s)	172, 441, 586, 1795
MluCI	AATT	6 cut(s)	388, 627, 719, 752, 1131, 1276
MlyI	GAGTC	2 cut(s)	903, 1169
Mph1103I	ATGCAT	1 cut(s)	484
MroI	TCCGGA	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	5 cut(s)	387, 450, 485, 869, 1130
MspA1I	CMGCKG	3 cut(s)	155, 201, 1070
MspI	CCGG	4 cut(s)	356, 499, 527, 865
MspR9I	CCNGG	1 cut(s)	861
MvaI	CCWGG	1 cut(s)	861
MvnI	CGCG	1 cut(s)	1199
NdeII	GATC	4 cut(s)	127, 469, 646, 1450
NlaIV	GGNNCC	4 cut(s)	171, 196, 305, 1602
NmuCI	GTSAC	2 cut(s)	1682, 1819
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	3 cut(s)	656, 729, 1000
PaeI	GCATGC	1 cut(s)	729
PaeR7I	CTCGAG	1 cut(s)	827
PagI	TCATGA	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	1498
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	29, 636, 1054
PflFI	GACNNNGTC	2 cut(s)	592, 1475
PflMI	CCANNNNNTGG	3 cut(s)	1183, 1802, 1830
PinAI	ACCGGT	2 cut(s)	355, 526
PleI	GAGTC	2 cut(s)	902, 1168
PmaCI	CACGTG	4 cut(s)	1007, 1409, 1429, 1631
PmlI	CACGTG	4 cut(s)	1007, 1409, 1429, 1631
PpsI	GAGTC	2 cut(s)	902, 1168
Ppu21I	YACGTR	4 cut(s)	1007, 1409, 1429, 1631
PpuMI	RGGWCCY	2 cut(s)	1356, 1600
PshBI	ATTAAT	1 cut(s)	387
Psp5II	RGGWCCY	2 cut(s)	1356, 1600
Psp6I	CCWGG	1 cut(s)	859
PspCI	CACGTG	4 cut(s)	1007, 1409, 1429, 1631
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	4 cut(s)	171, 196, 305, 1602
PspPI	GGNCC	4 cut(s)	304, 1186, 1356, 1600
PspPPI	RGGWCCY	2 cut(s)	1356, 1600
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	469
PsyI	GACNNNGTC	2 cut(s)	592, 1475
PvuII	CAGCTG	2 cut(s)	155, 1070
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SaqAI	TTAA	5 cut(s)	387, 450, 485, 869, 1130
Sau3AI	GATC	4 cut(s)	127, 469, 646, 1450
Sau96I	GGNCC	4 cut(s)	304, 1186, 1356, 1600
SchI	GAGTC	2 cut(s)	903, 1169
ScrFI	CCNGG	1 cut(s)	861
SduI	GDGCHC	4 cut(s)	172, 441, 586, 1795
SfaNI	GCATC	5 cut(s)	17, 331, 385, 469, 933
SfcI	CTRYAG	1 cut(s)	211
Sfr274I	CTCGAG	1 cut(s)	827
SinI	GGWCC	4 cut(s)	304, 1186, 1356, 1600
SlaI	CTCGAG	1 cut(s)	827
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
SphI	GCATGC	1 cut(s)	729
Sse9I	AATT	6 cut(s)	388, 627, 719, 752, 1131, 1276
SspMI	CTAG	4 cut(s)	177, 891, 926, 1560
StyD4I	CCNGG	1 cut(s)	859
TaaI	ACNGT	5 cut(s)	308, 1484, 1659, 1709, 1787
TaiI	ACGT	8 cut(s)	319, 438, 1009, 1401, 1411, 1431, 1504, 1633
TaqI	TCGA	2 cut(s)	828, 1449
TasI	AATT	6 cut(s)	388, 627, 719, 752, 1131, 1276
TauI	GCSGC	5 cut(s)	204, 1725, 1728, 1731, 1743
TfiI	GAWTC	3 cut(s)	29, 636, 1054
Tru1I	TTAA	5 cut(s)	387, 450, 485, 869, 1130
Tru9I	TTAA	5 cut(s)	387, 450, 485, 869, 1130
TscAI	CASTG	8 cut(s)	187, 238, 430, 1039, 1129, 1356, 1750, 1831
TseFI	GTSAC	2 cut(s)	1682, 1819
TseI	GCWGC	5 cut(s)	107, 608, 814, 1067, 1403
Tsp45I	GTSAC	2 cut(s)	1682, 1819
TspDTI	ATGAA	7 cut(s)	417, 656, 756, 1066, 1304, 1304, 1626
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	8 cut(s)	187, 238, 430, 1039, 1129, 1356, 1750, 1831
Tth111I	GACNNNGTC	2 cut(s)	592, 1475
Van91I	CCANNNNNTGG	3 cut(s)	1183, 1802, 1830
VpaK11BI	GGWCC	4 cut(s)	304, 1186, 1356, 1600
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	752
XbaI	TCTAGA	1 cut(s)	925
XceI	RCATGY	3 cut(s)	656, 729, 1000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	827
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	4 cut(s)	177, 891, 926, 1560
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.