Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

5853973 .. 5867965

Gene Structure 13993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG074900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATTGAGAGATCACGAGTTTCCCTCAAAATGATCAAGTATTTAGCAGTAGATGATAGGATGTTGGACATGGGTTTTGAACCTCAAATATCAAAGATTGTTCGACAAATGGACATGCCTTCCCCAGGTGCAAGACAAACTCTGCTTTTCAGTACTACATTCCCTAATGAGATACAGAGGCTTGCTTCAGAAATCCTCCAAAAATACATATTTTCGACTATTGGAATAGTTGGGAATGGGGACAAGATAAGGAATTTCTGTGGTCTTCTTCTTAAGAACCAGAGGGAAATTGAAACTCATGGAAAGGGGGACAAAGGGATAACAAATTTGAAATCAACTGATGTAGAGGTAGCTCCTGAGAATGCTTTTGGTGAGACTATTATTGAGAGTCAAGAGGAGTTCCTTCAAAAAATCTCTACTCTCAAGGATTGCATCCGGAAATCAACCTTATGTGGAACTGTGGAAGGGATGAGTCCACCAGAAGAAGTACTAGAAGAACCTTCATTTTGGACATGTGGAGTGATATTGGGATCTGGCTCTTCACATGCTTATCCAGTTATGATACGAGGGCCATATGGAGGAGAGATTGATTCAGCAAATTGTGTAGCAGTTAAGAGAGATTTCTATGCTTTTCGTGTGGTATTCGAGACTGAAGAAGATGCTACAATAGCAAATGAAGGTATTATGACCCATCAGTTGCCTGTGGAACTTCAACAGATGCCTCGACCTATGGAAAACAGTTGGTTTCGTTTTGGTATTCTAGATGTGCTACCTAGGGTGGTCTTTTGGAATCCCACGGTTACATGTTATGTACCCAAGAGATCAAAGGCTATGTTATATTTTATGAGCCAAATGGCTGATGACCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

290

Amino Acids

32.77

Weight (kDa)

5.14

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	6 - 60	3.4e-07	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	435
AclWI	GGATC	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	253, 325
AcuI	CTGAAG	2 cut(s)	171, 672
AfaI	GTAC	3 cut(s)	154, 489, 813
AfiI	CCNNNNNNNGG	2 cut(s)	125, 578
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	2 cut(s)	512, 803
AgsI	TTSAA	5 cut(s)	80, 293, 331, 407, 713
AjnI	CCWGG	2 cut(s)	124, 864
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	368, 641
AlwI	GGATC	1 cut(s)	538
Aor13HI	TCCGGA	1 cut(s)	435
AoxI	GGCC	1 cut(s)	569
ApoI	RAATTY	2 cut(s)	253, 325
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspA2I	CCTAGG	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	1 cut(s)	383
AvrII	CCTAGG	1 cut(s)	773
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	257
BccI	CCATC	1 cut(s)	699
BciT130I	CCWGG	2 cut(s)	126, 866
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	368, 641
BfaI	CTAG	3 cut(s)	491, 761, 774
BfrI	CTTAAG	1 cut(s)	272
BlnI	CCTAGG	1 cut(s)	773
BmcAI	AGTACT	2 cut(s)	154, 489
Bme1390I	CCNGG	2 cut(s)	126, 866
BmgT120I	GGNCC	1 cut(s)	569
BmrFI	CCNGG	2 cut(s)	126, 866
BmsI	GCATC	3 cut(s)	441, 649, 708
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	124, 773, 795
BsaWI	WCCGGW	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 578
Bse1I	ACTGG	1 cut(s)	554
BseAI	TCCGGA	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	126, 866
BseDI	CCNNGG	3 cut(s)	124, 773, 795
BseGI	GGATG	3 cut(s)	66, 432, 474
BseLI	CCNNNNNNNGG	2 cut(s)	125, 578
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	2 cut(s)	410, 594
BshFI	GGCC	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	254, 323
BslI	CCNNNNNNNGG	2 cut(s)	125, 578
BsmAI	GTCTC	2 cut(s)	368, 641
BsmFI	GGGAC	2 cut(s)	254, 323
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	571
Bsp13I	TCCGGA	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	11, 33, 530, 821
BspANI	GGCC	1 cut(s)	571
BspCNI	CTCAG	1 cut(s)	349
BspEI	TCCGGA	1 cut(s)	435
BspPI	GGATC	1 cut(s)	538
BspQI	GCTCTTC	1 cut(s)	544
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	3 cut(s)	124, 773, 795
BssMI	GATC	4 cut(s)	11, 33, 530, 821
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	773
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	126, 866
Bst4CI	ACNGT	3 cut(s)	460, 740, 799
Bst6I	CTCTTC	1 cut(s)	544
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	795
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	66, 432, 474
BstKTI	GATC	4 cut(s)	14, 36, 533, 824
BstMAI	GTCTC	2 cut(s)	368, 641
BstMBI	GATC	4 cut(s)	11, 33, 530, 821
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	2 cut(s)	126, 866
BstNSI	RCATGY	4 cut(s)	118, 516, 548, 807
BstSCI	CCNGG	2 cut(s)	124, 864
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	571
BtgI	CCRYGG	1 cut(s)	795
BtsCI	GGATG	3 cut(s)	66, 432, 474
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	153, 488, 812
CviAII	CATG	6 cut(s)	70, 115, 299, 513, 545, 804
CviJI	RGCY	7 cut(s)	181, 353, 537, 571, 830, 849, 857
CviKI_1	RGCY	7 cut(s)	181, 353, 537, 571, 830, 849, 857
CviQI	GTAC	3 cut(s)	153, 488, 812
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	4 cut(s)	13, 35, 532, 823
DpnII	GATC	4 cut(s)	11, 33, 530, 821
Eam1104I	CTCTTC	1 cut(s)	544
EarI	CTCTTC	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	171, 672
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	124, 864
EcoT14I	CCWWGG	1 cut(s)	773
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	6 cut(s)	73, 118, 302, 516, 548, 807
FaqI	GGGAC	2 cut(s)	254, 323
FatI	CATG	6 cut(s)	69, 114, 298, 512, 544, 803
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	33
FokI	GGATG	3 cut(s)	73, 419, 481
FspBI	CTAG	3 cut(s)	491, 761, 774
HaeIII	GGCC	1 cut(s)	571
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	6 cut(s)	73, 118, 302, 516, 548, 807
HinfI	GANTC	4 cut(s)	388, 472, 590, 790
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	6 cut(s)	15, 356, 392, 436, 646, 761
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	5 cut(s)	129, 413, 458, 510, 671
HpyCH4III	ACNGT	3 cut(s)	460, 740, 799
HpyCH4V	TGCA	2 cut(s)	131, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	73, 118, 302, 516, 548, 807
Kpn2I	TCCGGA	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	11, 33, 530, 821
LguI	GCTCTTC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	358
LweI	GCATC	3 cut(s)	441, 649, 708
MaeI	CTAG	3 cut(s)	491, 761, 774
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	4 cut(s)	13, 35, 532, 823
MboI	GATC	4 cut(s)	11, 33, 530, 821
MboII	GAAGA	7 cut(s)	257, 260, 494, 506, 531, 665, 668
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	4 cut(s)	253, 288, 325, 598
MlyI	GAGTC	2 cut(s)	397, 481
MmeI	TCCRAC	1 cut(s)	45
MroI	TCCGGA	1 cut(s)	435
MseI	TTAA	2 cut(s)	273, 612
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	2 cut(s)	126, 866
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	126, 866
MwoI	GCNNNNNNNGC	1 cut(s)	668
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	4 cut(s)	11, 33, 530, 821
NlaIII	CATG	6 cut(s)	73, 118, 302, 516, 548, 807
NspI	RCATGY	4 cut(s)	118, 516, 548, 807
PciI	ACATGT	2 cut(s)	512, 803
PciSI	GCTCTTC	1 cut(s)	544
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	590, 790
PleI	GAGTC	2 cut(s)	396, 480
PpsI	GAGTC	2 cut(s)	396, 480
PscI	ACATGT	2 cut(s)	512, 803
Psp6I	CCWGG	2 cut(s)	124, 864
PspGI	CCWGG	2 cut(s)	124, 864
PspPI	GGNCC	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	3 cut(s)	154, 489, 813
RsaNI	GTAC	3 cut(s)	153, 488, 812
SapI	GCTCTTC	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	273, 612
Sau3AI	GATC	4 cut(s)	11, 33, 530, 821
Sau96I	GGNCC	1 cut(s)	569
ScaI	AGTACT	2 cut(s)	154, 489
SchI	GAGTC	2 cut(s)	397, 481
ScrFI	CCNGG	2 cut(s)	126, 866
SetI	ASST	9 cut(s)	85, 130, 351, 355, 449, 502, 682, 730, 775
SfaNI	GCATC	3 cut(s)	441, 649, 708
SmlI	CTYRAG	2 cut(s)	272, 422
SmoI	CTYRAG	2 cut(s)	272, 422
Sse9I	AATT	4 cut(s)	253, 288, 325, 598
SspMI	CTAG	3 cut(s)	491, 761, 774
StyD4I	CCNGG	2 cut(s)	124, 864
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	3 cut(s)	460, 740, 799
TaqI	TCGA	4 cut(s)	103, 215, 645, 724
TasI	AATT	4 cut(s)	253, 288, 325, 598
TatI	WGTACW	2 cut(s)	152, 487
TfiI	GAWTC	2 cut(s)	590, 790
Tru1I	TTAA	2 cut(s)	273, 612
Tru9I	TTAA	2 cut(s)	273, 612
TspDTI	ATGAA	2 cut(s)	492, 690
Vha464I	CTTAAG	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	2 cut(s)	253, 325
XbaI	TCTAGA	1 cut(s)	760
XceI	RCATGY	4 cut(s)	118, 516, 548, 807
XmaJI	CCTAGG	1 cut(s)	773
XspI	CTAG	3 cut(s)	491, 761, 774
ZrmI	AGTACT	2 cut(s)	154, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.