Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Reverse (-)

6712706 .. 6717521

Gene Structure 4816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G006990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATTGAGAGATCACGAGTTTCCCTCAAAATGATCAAGTATTTAGCAGTAGATGATAGGATGTTGGACATGGGTTTTGAACCTCAAATATCAAAGATTGTTCGACAAATGGACATGCCTTCCCCAGGTGCAAGACAAACTCTGCTTTTCAGTGCTACATTCCCTAATGAGATACAGAGGCTTGCTTCAGAACTCCTCCAAAAATACATATTTTCGACTATTGGAATAGTTGGGAATGGGGACAAGATAAGGAATTTATGTGGTCTTCTTCTTAAGAACCAGAGGGAAATTGAAACTCATGGAAAGGGGGACAAAGGGATAACAAATTTGAAATCAGCTGATGTAGAGGTAGCTCCTGAGAATGCTTTTGGTGAGACTATTATTGAGAGTCAAGAGGAGTTCCTTCAAAAAATCTCTACTCTCAAGGATTGCATCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

146

Amino Acids

16.47

Weight (kDa)

6.6

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	6 - 60	6.3e-09	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	253, 325
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	80, 293, 331, 407
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	338, 353
AluI	AGCT	2 cut(s)	338, 353
Alw26I	GTCTC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	253, 325
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsuHPI	GGTGA	1 cut(s)	383
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	368
BfrI	CTTAAG	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	66, 432
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	185, 410
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	254, 323
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	254, 323
BsmI	GAATGC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	11, 33
BspCNI	CTCAG	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	11, 33
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	357
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	66, 432
BstKTI	GATC	2 cut(s)	14, 36
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	11, 33
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	66, 432
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	183
CviAII	CATG	3 cut(s)	70, 115, 299
CviJI	RGCY	3 cut(s)	181, 338, 353
CviKI_1	RGCY	3 cut(s)	181, 338, 353
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	13, 35
DpnII	GATC	2 cut(s)	11, 33
Eco57I	CTGAAG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	3 cut(s)	73, 118, 302
FaiI	YATR	5 cut(s)	71, 116, 209, 259, 300
FaqI	GGGAC	2 cut(s)	254, 323
FatI	CATG	3 cut(s)	69, 114, 298
FbaI	TGATCA	1 cut(s)	33
FokI	GGATG	2 cut(s)	73, 419
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	3 cut(s)	73, 118, 302
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	383
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	15, 356, 392
HpyAV	CCTTC	2 cut(s)	129, 413
HpyCH4V	TGCA	2 cut(s)	131, 432
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	73, 118, 302
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	11, 33
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	4 cut(s)	111, 138, 293, 369
MalI	GATC	2 cut(s)	13, 35
MboI	GATC	2 cut(s)	11, 33
MboII	GAAGA	2 cut(s)	257, 260
MluCI	AATT	3 cut(s)	253, 288, 325
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	7 cut(s)	35, 93, 171, 206, 276, 340, 388
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	338
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	11, 33
NlaIII	CATG	3 cut(s)	73, 118, 302
NspI	RCATGY	1 cut(s)	118
PctI	GAATGC	1 cut(s)	367
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	11, 33
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	5 cut(s)	85, 130, 340, 351, 355
SmlI	CTYRAG	2 cut(s)	272, 422
SmoI	CTYRAG	2 cut(s)	272, 422
Sse9I	AATT	3 cut(s)	253, 288, 325
StyD4I	CCNGG	1 cut(s)	124
TaqI	TCGA	2 cut(s)	103, 215
TasI	AATT	3 cut(s)	253, 288, 325
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	157
TspRI	CASTG	1 cut(s)	157
Vha464I	CTTAAG	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	2 cut(s)	253, 325
XceI	RCATGY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.