Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Reverse (-)

25508579 .. 25513086

Gene Structure 4508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGAGGTCATGGGCAGATTCTGTAGGTAATGATGGAGACAATGCAGACGCTGGTTCGTCTGAAAATAACAGCTCATCTCGTCCATCTGACAATAGAAGCTCATCGCGCCCTTCTGACAATAGCAGCTCATCTCGTCCTGCACGATCAACTTATGTTCCGCCACATCTTCGTAATAGGCCTCCGTCTGCTGATCCTCCGGCTCCTTCACAGACTACCCTGCCACCAGCCAATGTAGGTTATAATGGGCCTGCAGCTGGGTCTGCCTGGGGTGGTGGTGGTGGTTTTAGGTCTGATGTTGGGCGTGGGGGATATGGTGGTGGTGGTGGTGGTGCTGGTCGAGGTGGTGGTGGTGGTTGGAACAATAGAAGTGGAGGGTGGGACCGTGGGAGGGAACGAGAGGTAAATCCCTTTGCTGATGACGATAACACAGAACAGCCCTTTGAGCAAGAAAACACAGGCATCAACTTTGATGCTTATGAGGATATCCCAGTTGAAACTAGTGGATCTGATGTCCCACCACCTGTGAATACTTTTGCAGAGATAGATCTAGGGGACGCGTTGAATTTAAATATTAGGAGATGCAAGTATGTGAGGCCAACTCCTGTTCAGCGTCATGCAATACCGATCTCTCTTGCAGGACGAGATTTGATGGCCTGTGCTCAGACAGGTTCTGGCAAGACAGCTGCTTTCTGCTTTCCAATTATTAGTGGGATCATGCAGGGGCAGTATGCTCAGAGACCTCGTGGAGCACGTACTGTGTATCCTCTTGCTCTTATTCTCTCCCCTACTAGAGAACTATCGTGTCAGATACATGAAGAAGCTAGAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCGCCAATAAACCAACAGTTGAGAGAGCTTGAAAGAGGAGTAGATATTCTTGTGGCAACTCCGGGTCGATTGGTAGATCTGCTTGAGAGAGTTAGAGTATCATTGCAGATGATACGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATTAGGAAGATAGTGGAACAGATGGACATGCCTCCACCAGGTTTGAGACAGACCATGCTATTCAGTGCAACCTTTCCAAAGGAGATACAGCTCACAATTTCTGTTGGAATGCAGAGACTGGCGTCGGATTTTCTGGCAAACTATATATTTTTGGCTGTTGGAAGGGTTGGCTCAAGTACTGATTTAATTGTTCAAAGAGTTGAATTTGTTCATGAATCTGATAAGAGAAGTCATCTCATGGACCTCCTTCACGCACAAAGGGAAAATGGAACTCATGGCAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCAGATGCACTGGAACACTGGTTGTGTATTAATGGGTTTCCAGCAACTACTATTCATGGTGACAGAACACAACAGGAAAGAGAACAGGCACTGAGATCATTTAAGAGTGGACATACACCAATTTTAGTGGCAACAGATGTGGCTGCACGTGGTCTGGACATTCCCCATGTAGCTCACGTTGTAAATTTTGATCTTCCAAATGACATTGATGATTATGTTCACCGGATAGGTCGGACAGGGCGAGCCGGAAAATCAGGACTTGCAACAGCATTCTTTAATGAGAACAACCTTTCGATGGCAAAACCACTAGCTGATCTAATGCAAGAAGCAAATCAGGAAGTACCTGCTTGGATTACTCGATACGCATCGAGGGCTTCTTATGGTGGTGGTAGAAACCGGCGATCTGGGGGAGGCCGTTTTGGTGGCCGTGACTTCAGAAGGGAGAATTCTTTCAACAGGGGTTCAGATTTTTATGGAGGGGGAAATAATGGCGGTGGATATGGTGGCGGCGGCTATGGTGGCGGCGGCTATGGTGGTGGGGGTTATGGCGGTGGTACTGGTCCGAGTGCTTGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

647

Amino Acids

69.5

Weight (kDa)

6.91

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	200 - 378	2.9e-48	DEAD/DEAH box helicase
Helicase_C	PF00271	423 - 538	1.7e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	1717
AccII	CGCG	2 cut(s)	106, 557
AciI	CCGC	7 cut(s)	158, 1857, 1872, 1875, 1887, 1890, 1914
AclWI	GGATC	3 cut(s)	185, 511, 719
AcoI	YGGCCR	1 cut(s)	1789
AcsI	RAATTY	4 cut(s)	562, 1247, 1549, 1810
AcuI	CTGAAG	1 cut(s)	1783
AcvI	CACGTG	1 cut(s)	1514
AcyI	GRCGYC	1 cut(s)	1166
AfaI	GTAC	4 cut(s)	754, 1222, 1707, 1921
AfiI	CCNNNNNNNGG	4 cut(s)	254, 388, 1082, 1660
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	6 cut(s)	494, 562, 905, 1238, 1247, 1819
AhlI	ACTAGT	1 cut(s)	497
AjnI	CCWGG	2 cut(s)	263, 1081
Alw21I	GWGCWC	2 cut(s)	661, 751
Alw26I	GTCTC	5 cut(s)	30, 730, 1084, 1153, 1346
AlwI	GGATC	3 cut(s)	185, 511, 719
AlwNI	CAGNNNCTG	5 cut(s)	20, 50, 671, 1162, 1456
AoxI	GGCC	6 cut(s)	176, 245, 593, 651, 1777, 1789
ApeKI	GCWGC	4 cut(s)	123, 251, 683, 1508
ApoI	RAATTY	4 cut(s)	562, 1247, 1549, 1810
ArsI	GACNNNNNNTTYG	2 cut(s)	1016, 1048
AseI	ATTAAT	1 cut(s)	1395
Asp700I	GAANNNNTTC	3 cut(s)	829, 1251, 1814
AspLEI	GCGC	2 cut(s)	108, 877
AspS9I	GGNCC	4 cut(s)	245, 379, 1285, 1925
AsuC2I	CCSGG	1 cut(s)	936
AsuHPI	GGTGA	2 cut(s)	1436, 1577
AvaII	GGWCC	3 cut(s)	379, 1285, 1925
BauI	CACGAG	1 cut(s)	741
BbrPI	CACGTG	1 cut(s)	1514
Bbv12I	GWGCWC	2 cut(s)	661, 751
BbvI	GCAGC	4 cut(s)	135, 263, 670, 1495
BccI	CCATC	5 cut(s)	26, 91, 643, 1060, 1654
BceAI	ACGGC	2 cut(s)	1764, 1776
BciT130I	CCWGG	2 cut(s)	265, 1083
BciVI	GTATCC	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	936
BcoDI	GTCTC	5 cut(s)	30, 730, 1084, 1153, 1346
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	6 cut(s)	498, 548, 789, 822, 1673, 1942
BfmI	CTRYAG	2 cut(s)	21, 249
BfoI	RGCGCY	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	1717
BfuI	GTATCC	1 cut(s)	771
BglII	AGATCT	2 cut(s)	544, 949
BisI	GCNGC	8 cut(s)	124, 252, 684, 1509, 1873, 1876, 1888, 1891
BlsI	GCNGC	8 cut(s)	125, 253, 685, 1510, 1874, 1877, 1889, 1892
BmcAI	AGTACT	1 cut(s)	1222
Bme1390I	CCNGG	3 cut(s)	265, 936, 1083
Bme18I	GGWCC	3 cut(s)	379, 1285, 1925
BmgT120I	GGNCC	4 cut(s)	245, 379, 1285, 1925
BmiI	GGNNCC	2 cut(s)	201, 380
BmrFI	CCNGG	3 cut(s)	265, 936, 1083
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	6 cut(s)	460, 468, 569, 1008, 1360, 1739
BmuI	ACTGGG	1 cut(s)	482
BoxI	GACNNNNGTC	1 cut(s)	1165
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpuEI	CTTGAG	2 cut(s)	977, 1201
BpuMI	CCSGG	1 cut(s)	936
BsaAI	YACGTR	2 cut(s)	752, 1514
BsaBI	GATNNNNATC	1 cut(s)	1729
BsaHI	GRCGYC	1 cut(s)	1166
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	2 cut(s)	264, 382
BsaWI	WCCGGW	1 cut(s)	1587
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 388, 1082, 1660
Bse118I	RCCGGY	1 cut(s)	1761
Bse1I	ACTGG	6 cut(s)	488, 847, 1167, 1380, 1388, 1927
Bse3DI	GCAATG	1 cut(s)	974
Bse8I	GATNNNNATC	1 cut(s)	1729
BseBI	CCWGG	2 cut(s)	265, 1083
BseDI	CCNNGG	2 cut(s)	264, 382
BseGI	GGATG	1 cut(s)	1023
BseJI	GATNNNNATC	1 cut(s)	1729
BseLI	CCNNNNNNNGG	4 cut(s)	254, 388, 1082, 1660
BseMI	GCAATG	1 cut(s)	974
BseMII	CTCAG	3 cut(s)	674, 746, 1448
BseNI	ACTGG	6 cut(s)	488, 847, 1167, 1380, 1388, 1927
BseRI	GAGGAG	2 cut(s)	885, 924
BseXI	GCAGC	4 cut(s)	135, 263, 670, 1495
BseYI	CCCAGC	1 cut(s)	254
BsgI	GTGCAG	2 cut(s)	123, 1494
Bsh1236I	CGCG	2 cut(s)	106, 557
BshFI	GGCC	6 cut(s)	178, 247, 595, 653, 1779, 1791
BsiHKAI	GWGCWC	2 cut(s)	661, 751
BsiSI	CCGG	5 cut(s)	197, 935, 1588, 1611, 1762
BslFI	GGGAC	3 cut(s)	392, 497, 566
BslI	CCNNNNNNNGG	4 cut(s)	254, 388, 1082, 1660
BsmAI	GTCTC	5 cut(s)	30, 730, 1084, 1153, 1346
BsmFI	GGGAC	3 cut(s)	392, 497, 566
BsmI	GAATGC	2 cut(s)	1158, 1634
BsnI	GGCC	6 cut(s)	178, 247, 595, 653, 1779, 1791
Bso31I	GGTCTC	1 cut(s)	730
Bsp1286I	GDGCHC	2 cut(s)	661, 751
BspACI	CCGC	7 cut(s)	158, 1857, 1872, 1875, 1887, 1890, 1914
BspANI	GGCC	6 cut(s)	178, 247, 595, 653, 1779, 1791
BspCNI	CTCAG	3 cut(s)	673, 745, 1449
BspFNI	CGCG	2 cut(s)	106, 557
BspHI	TCATGA	1 cut(s)	1255
BspLI	GGNNCC	2 cut(s)	201, 380
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	1717
BspPI	GGATC	3 cut(s)	185, 511, 719
BspTNI	GGTCTC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	974
BsrFI	RCCGGY	1 cut(s)	1761
BsrI	ACTGG	6 cut(s)	488, 847, 1167, 1380, 1388, 1927
BssAI	RCCGGY	1 cut(s)	1761
BssECI	CCNNGG	2 cut(s)	264, 382
BssNI	GRCGYC	1 cut(s)	1166
BssSI	CACGAG	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	265, 1083
Bst4CI	ACNGT	3 cut(s)	383, 757, 891
BstACI	GRCGYC	1 cut(s)	1166
BstBAI	YACGTR	2 cut(s)	752, 1514
BstC8I	GCNNGC	4 cut(s)	249, 1325, 1329, 1608
BstDEI	CTNAG	3 cut(s)	660, 732, 1457
BstDSI	CCRYGG	1 cut(s)	382
BstENI	CCTNNNNNAGG	1 cut(s)	1080
BstF5I	GGATG	1 cut(s)	1023
BstFNI	CGCG	2 cut(s)	106, 557
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	2 cut(s)	108, 877
BstMAI	GTCTC	5 cut(s)	30, 730, 1084, 1153, 1346
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 260, 442, 1736, 1884
BstNI	CCWGG	2 cut(s)	265, 1083
BstNSI	RCATGY	1 cut(s)	1075
BstPAI	GACNNNNGTC	1 cut(s)	1165
BstSCI	CCNGG	3 cut(s)	263, 934, 1081
BstSFI	CTRYAG	2 cut(s)	21, 249
BstUI	CGCG	2 cut(s)	106, 557
BstV1I	GCAGC	4 cut(s)	135, 263, 670, 1495
BstX2I	RGATCY	3 cut(s)	503, 544, 949
BstYI	RGATCY	3 cut(s)	503, 544, 949
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	6 cut(s)	178, 247, 595, 653, 1779, 1791
BtgI	CCRYGG	1 cut(s)	382
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	1023
BtsIMutI	CAGTG	4 cut(s)	1114, 1373, 1381, 1454
BveI	ACCTGC	1 cut(s)	1717
Cac8I	GCNNGC	4 cut(s)	249, 1325, 1329, 1608
CaiI	CAGNNNCTG	5 cut(s)	20, 50, 671, 1162, 1456
CciI	TCATGA	1 cut(s)	1255
CfoI	GCGC	2 cut(s)	108, 877
Cfr10I	RCCGGY	1 cut(s)	1761
Cfr13I	GGNCC	4 cut(s)	245, 379, 1285, 1925
CseI	GACGC	4 cut(s)	56, 563, 599, 1155
CsiI	ACCWGGT	1 cut(s)	1081
Csp6I	GTAC	4 cut(s)	753, 1221, 1706, 1920
CspCI	CAANNNNNGTGG	8 cut(s)	349, 384, 1068, 1103, 1473, 1485, 1508, 1520
CviQI	GTAC	4 cut(s)	753, 1221, 1706, 1920
DdeI	CTNAG	3 cut(s)	660, 732, 1457
DraI	TTTAAA	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	1789
EciI	GGCGGA	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	3 cut(s)	379, 1285, 1925
Eco57I	CTGAAG	1 cut(s)	1783
Eco72I	CACGTG	1 cut(s)	1514
EcoNI	CCTNNNNNAGG	1 cut(s)	1080
EcoRI	GAATTC	1 cut(s)	1810
EcoRII	CCWGG	2 cut(s)	263, 1081
EcoRV	GATATC	1 cut(s)	484
FaqI	GGGAC	3 cut(s)	392, 497, 566
Fnu4HI	GCNGC	8 cut(s)	124, 252, 684, 1509, 1873, 1876, 1888, 1891
FokI	GGATG	1 cut(s)	1030
Fsp4HI	GCNGC	8 cut(s)	124, 252, 684, 1509, 1873, 1876, 1888, 1891
FspBI	CTAG	6 cut(s)	498, 548, 789, 822, 1673, 1942
GlaI	GCGC	2 cut(s)	107, 876
GluI	GCNGC	8 cut(s)	124, 252, 684, 1509, 1873, 1876, 1888, 1891
GsaI	CCCAGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	6 cut(s)	178, 247, 595, 653, 1779, 1791
HapII	CCGG	5 cut(s)	197, 935, 1588, 1611, 1762
HgaI	GACGC	4 cut(s)	56, 563, 599, 1155
HhaI	GCGC	2 cut(s)	108, 877
Hin1I	GRCGYC	1 cut(s)	1166
Hin6I	GCGC	2 cut(s)	106, 875
HinP1I	GCGC	2 cut(s)	106, 875
HindIII	AAGCTT	1 cut(s)	1329
HinfI	GANTC	2 cut(s)	17, 1259
HpaII	CCGG	5 cut(s)	197, 935, 1588, 1611, 1762
HphI	GGTGA	2 cut(s)	1436, 1577
Hpy166II	GTNNAC	2 cut(s)	1475, 1585
Hpy188III	TCNNGA	5 cut(s)	1001, 1256, 1520, 1620, 1700
Hpy8I	GTNNAC	2 cut(s)	1475, 1585
Hpy99I	CGWCG	1 cut(s)	1171
HpyAV	CCTTC	6 cut(s)	120, 213, 1200, 1301, 1354, 1797
HpyCH4III	ACNGT	3 cut(s)	383, 757, 891
HpyCH4IV	ACGT	3 cut(s)	751, 1513, 1542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 260, 442, 1736, 1884
HpyF3I	CTNAG	3 cut(s)	660, 732, 1457
HpySE526I	ACGT	3 cut(s)	751, 1513, 1542
Hsp92I	GRCGYC	1 cut(s)	1166
HspAI	GCGC	2 cut(s)	106, 875
LmnI	GCTCC	4 cut(s)	205, 746, 872, 1364
Lsp1109I	GCAGC	4 cut(s)	135, 263, 670, 1495
LweI	GCATC	6 cut(s)	460, 468, 569, 1008, 1360, 1739
MabI	ACCWGGT	1 cut(s)	1081
MaeI	CTAG	6 cut(s)	498, 548, 789, 822, 1673, 1942
MaeII	ACGT	3 cut(s)	751, 1513, 1542
MaeIII	GTNAC	2 cut(s)	1424, 1793
MboII	GAAGA	4 cut(s)	158, 827, 1063, 1550
MflI	RGATCY	3 cut(s)	503, 544, 949
MhlI	GDGCHC	2 cut(s)	661, 751
MluCI	AATT	9 cut(s)	562, 699, 1044, 1140, 1230, 1247, 1485, 1549, 1810
MluI	ACGCGT	1 cut(s)	555
MmeI	TCCRAC	5 cut(s)	335, 1129, 1149, 1183, 1577
MroXI	GAANNNNTTC	3 cut(s)	829, 1251, 1814
MseI	TTAA	5 cut(s)	566, 1229, 1395, 1467, 1641
MspA1I	CMGCKG	2 cut(s)	254, 683
MspI	CCGG	5 cut(s)	197, 935, 1588, 1611, 1762
MspR9I	CCNGG	3 cut(s)	265, 936, 1083
Mva1269I	GAATGC	2 cut(s)	1158, 1634
MvaI	CCWGG	2 cut(s)	265, 1083
MvnI	CGCG	2 cut(s)	106, 557
MwoI	GCNNNNNNNGC	5 cut(s)	105, 260, 442, 1736, 1884
NciI	CCSGG	1 cut(s)	936
NlaIV	GGNNCC	2 cut(s)	201, 380
NmuCI	GTSAC	2 cut(s)	1424, 1793
NspI	RCATGY	1 cut(s)	1075
PagI	TCATGA	1 cut(s)	1255
PceI	AGGCCT	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	3 cut(s)	139, 748, 1603
PctI	GAATGC	2 cut(s)	1158, 1634
PdmI	GAANNNNTTC	3 cut(s)	829, 1251, 1814
PfeI	GAWTC	2 cut(s)	17, 1259
PkrI	GCNGC	8 cut(s)	125, 253, 685, 1510, 1874, 1877, 1889, 1892
PmaCI	CACGTG	1 cut(s)	1514
PmlI	CACGTG	1 cut(s)	1514
Ppu21I	YACGTR	2 cut(s)	752, 1514
PshAI	GACNNNNGTC	1 cut(s)	1165
PshBI	ATTAAT	1 cut(s)	1395
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	263, 1081
PspCI	CACGTG	1 cut(s)	1514
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	263, 1081
PspN4I	GGNNCC	2 cut(s)	201, 380
PspPI	GGNCC	4 cut(s)	245, 379, 1285, 1925
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	5 cut(s)	20, 50, 671, 1162, 1456
PsuI	RGATCY	3 cut(s)	503, 544, 949
PvuII	CAGCTG	2 cut(s)	254, 683
RsaI	GTAC	4 cut(s)	754, 1222, 1707, 1921
RsaNI	GTAC	4 cut(s)	753, 1221, 1706, 1920
SaqAI	TTAA	5 cut(s)	566, 1229, 1395, 1467, 1641
SatI	GCNGC	8 cut(s)	124, 252, 684, 1509, 1873, 1876, 1888, 1891
Sau96I	GGNCC	4 cut(s)	245, 379, 1285, 1925
ScaI	AGTACT	1 cut(s)	1222
ScrFI	CCNGG	3 cut(s)	265, 936, 1083
SduI	GDGCHC	2 cut(s)	661, 751
SexAI	ACCWGGT	1 cut(s)	1081
SfaNI	GCATC	6 cut(s)	460, 468, 569, 1008, 1360, 1739
SfcI	CTRYAG	2 cut(s)	21, 249
SinI	GGWCC	3 cut(s)	379, 1285, 1925
SmiI	ATTTAAAT	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	956, 1216
SmoI	CTYRAG	2 cut(s)	956, 1216
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	9 cut(s)	562, 699, 1044, 1140, 1230, 1247, 1485, 1549, 1810
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	7 cut(s)	158, 1857, 1872, 1875, 1887, 1890, 1914
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	6 cut(s)	498, 548, 789, 822, 1673, 1942
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	3 cut(s)	263, 934, 1081
SwaI	ATTTAAAT	1 cut(s)	567
TaaI	ACNGT	3 cut(s)	383, 757, 891
TaiI	ACGT	3 cut(s)	754, 1516, 1545
TaqI	TCGA	5 cut(s)	337, 940, 1658, 1723, 1733
TasI	AATT	9 cut(s)	562, 699, 1044, 1140, 1230, 1247, 1485, 1549, 1810
TatI	WGTACW	1 cut(s)	1220
TauI	GCSGC	4 cut(s)	1875, 1878, 1890, 1893
TfiI	GAWTC	2 cut(s)	17, 1259
Tru1I	TTAA	5 cut(s)	566, 1229, 1395, 1467, 1641
Tru9I	TTAA	5 cut(s)	566, 1229, 1395, 1467, 1641
TscAI	CASTG	4 cut(s)	1114, 1380, 1388, 1461
TseFI	GTSAC	2 cut(s)	1424, 1793
TseI	GCWGC	4 cut(s)	123, 251, 683, 1508
Tsp45I	GTSAC	2 cut(s)	1424, 1793
TspDTI	ATGAA	4 cut(s)	828, 1244, 1272, 1409
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	4 cut(s)	1114, 1380, 1388, 1461
VpaK11BI	GGWCC	3 cut(s)	379, 1285, 1925
VspI	ATTAAT	1 cut(s)	1395
XagI	CCTNNNNNAGG	1 cut(s)	1080
XapI	RAATTY	4 cut(s)	562, 1247, 1549, 1810
XceI	RCATGY	1 cut(s)	1075
XmnI	GAANNNNTTC	3 cut(s)	829, 1251, 1814
XspI	CTAG	6 cut(s)	498, 548, 789, 822, 1673, 1942
ZrmI	AGTACT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.