AT3G06060

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
1827922 .. 1830469
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06060.2

Sequence Viewer

Length: 981 bp
ATGGCGGCCATTTCTCCTCTCTTCCTTCTCTTCCTCATTCCCATTATCCCACTATCGCTTCTCGCTATCTTAGCCCTAATTGTACGTCCTCGTCCCATTAAGATCCCTATCAAGTCCCGTCACGCCTTCATCACCGGTGGATCTAGCGGCATCGGTCTTGCTCTCGCCCACCGCGCCGCTTCCGAGGGCGCTCGTGTCTCAATCCTCGCCCGATCCGGATCAAAGCTCGAGGAGGCTAAGAAATCGATCCAGCTCGCCACTGGTGTCGAAGTCGCCACATTCTCTGCAGACGTTCGCGATTACGATGCAGTCTCGAAGGCGATAGATGAATCGGGACCGATCGATGTGTTGATTGTTAACCAAGGTGTGTTTACGGCGAAGGAGCTGGTGAAACATAGTCCTGAAGATGTCAAATTCACGATTGACGTAAATCTTGTTGGGAGCTTCAATGTGATTAAAGCCGCTTTGCCTGCCATGAAAGCAAGGAAAGATCGTGGACCTGCTTCCATCAGTCTCGTCTCCTCTCAAGCTGGTCAGGTTGGTGTCTATGGTTATGCTGCATATTCAGCAAGCAAGTTTGGTCTTCAGGGTTTAGCGCAAGCATTGCAACAGGAAGTTATATCTGATGATATTCATGTCACTCTTATTTTTCCTCCTGACACTAATACACCCGGCTTTGAAGAAGAACAGAAGAGCAGACCTGAAGTCACTGCCATAATAGCTGCATCCTCTGGTTCAATGGAAACAGAAGAAGTAGCAAAAAAGGCTATGGATGGCATAAAAGCAGGAAACTTCACCGTCTCATGCAACTTTGAGGGATTCTTACTGTCTCTCGCGACAACCGGCATGTCCCCTCAAAGATCATTTTGGCTTGCTTTTCTTGAAGTTATAACCGCAGGGCCTATAAGATTAATCGCTCTCTTCTTTCAATGGGATTGGTATAAAGCCATTGAAAAATGGAGCAAAACCAAAACCAAATGA

Protein Analysis

326

Amino Acids

34.98

Weight (kDa)

8.81

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 58 - 248 7.2e-45 short chain dehydrogenase
KR PF08659 60 - 221 1.7e-12 KR domain
Epimerase PF01370 60 - 174 1.1e-06 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 60 - 175 5e-06 GDP-mannose 4,6 dehydratase
adh_short_C2 PF13561 66 - 271 2.2e-27 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 890
Acc36I ACCTGC 1 cut(s) 508
AccII CGCG 3 cut(s) 174, 297, 836
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 6 cut(s) 5, 147, 172, 177, 462, 894
AclWI GGATC 5 cut(s) 97, 148, 207, 226, 241
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 3 cut(s) 423, 569, 723
AfaI GTAC 1 cut(s) 84
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 6 cut(s) 448, 680, 738, 884, 929, 953
AhdI GACNNNNNGTC 1 cut(s) 704
AluBI AGCT 6 cut(s) 226, 253, 385, 444, 530, 722
AluI AGCT 6 cut(s) 226, 253, 385, 444, 530, 722
Alw26I GTCTC 6 cut(s) 202, 316, 518, 523, 805, 834
AlwI GGATC 5 cut(s) 97, 148, 207, 226, 241
Ama87I CYCGRG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 2 cut(s) 6, 899
ApeKI GCWGC 2 cut(s) 557, 722
ApoI RAATTY 1 cut(s) 413
AseI ATTAAT 1 cut(s) 911
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 3 cut(s) 176, 191, 598
AspS9I GGNCC 3 cut(s) 335, 497, 899
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 3 cut(s) 124, 400, 787
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 2 cut(s) 335, 497
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 544, 709
BccI CCATC 2 cut(s) 515, 767
BceAI ACGGC 1 cut(s) 390
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 6 cut(s) 202, 316, 518, 523, 805, 834
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 508
BisI GCNGC 6 cut(s) 6, 148, 177, 462, 558, 723
BlsI GCNGC 6 cut(s) 7, 149, 178, 463, 559, 724
Bme1390I CCNGG 1 cut(s) 672
Bme18I GGWCC 2 cut(s) 335, 497
BmeRI GACNNNNNGTC 1 cut(s) 704
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 3 cut(s) 335, 497, 899
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 672
BmsI GCATC 3 cut(s) 159, 295, 734
BpiI GAAGAC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 672
Bsa29I ATCGAT 2 cut(s) 245, 342
BsaBI GATNNNNATC 2 cut(s) 107, 217
BsaJI CCNNGG 2 cut(s) 183, 361
BsaWI WCCGGW 2 cut(s) 134, 215
Bse118I RCCGGY 2 cut(s) 134, 842
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 602
Bse8I GATNNNNATC 2 cut(s) 107, 217
BseAI TCCGGA 1 cut(s) 215
BseCI ATCGAT 2 cut(s) 245, 342
BseDI CCNNGG 2 cut(s) 183, 361
BseGI GGATG 2 cut(s) 725, 778
BseJI GATNNNNATC 2 cut(s) 107, 217
BseMI GCAATG 1 cut(s) 602
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 3 cut(s) 6, 245, 511
BseXI GCAGC 2 cut(s) 544, 709
Bsh1236I CGCG 3 cut(s) 174, 297, 836
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 2 cut(s) 8, 901
BshTI ACCGGT 1 cut(s) 134
BshVI ATCGAT 2 cut(s) 245, 342
BsiEI CGRYCG 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 4 cut(s) 135, 216, 672, 843
BslFI GGGAC 4 cut(s) 78, 100, 348, 835
BsmAI GTCTC 6 cut(s) 202, 316, 518, 523, 805, 834
BsmBI CGTCTC 2 cut(s) 523, 805
BsmFI GGGAC 4 cut(s) 78, 100, 348, 835
BsnI GGCC 2 cut(s) 8, 901
BsoBI CYCGRG 1 cut(s) 227
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 8 cut(s) 102, 140, 212, 218, 246, 339, 490, 860
Bsp68I TCGCGA 2 cut(s) 297, 836
BspACI CCGC 6 cut(s) 5, 147, 172, 177, 462, 894
BspANI GGCC 2 cut(s) 8, 901
BspDI ATCGAT 2 cut(s) 245, 342
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 3 cut(s) 174, 297, 836
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 5 cut(s) 97, 148, 207, 226, 241
BspQI GCTCTTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 602
BsrFI RCCGGY 2 cut(s) 134, 842
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 2 cut(s) 134, 842
BssECI CCNNGG 2 cut(s) 183, 361
BssMI GATC 8 cut(s) 102, 140, 212, 218, 246, 339, 490, 860
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 799, 828
Bst6I CTCTTC 4 cut(s) 26, 35, 686, 926
BstAPI GCANNNNNTGC 1 cut(s) 604
BstC8I GCNNGC 5 cut(s) 255, 471, 571, 600, 873
BstDEI CTNAG 2 cut(s) 70, 237
BstF5I GGATG 2 cut(s) 725, 778
BstFNI CGCG 3 cut(s) 174, 297, 836
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 3 cut(s) 176, 191, 598
BstKTI GATC 8 cut(s) 105, 143, 215, 221, 249, 342, 493, 863
BstMAI GTCTC 6 cut(s) 202, 316, 518, 523, 805, 834
BstMBI GATC 8 cut(s) 102, 140, 212, 218, 246, 339, 490, 860
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 8 cut(s) 71, 173, 470, 479, 566, 604, 719, 764
BstNSI RCATGY 1 cut(s) 850
BstSCI CCNGG 1 cut(s) 670
BstSFI CTRYAG 1 cut(s) 285
BstUI CGCG 3 cut(s) 174, 297, 836
BstV1I GCAGC 2 cut(s) 544, 709
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 2 cut(s) 102, 140
BstYI RGATCY 2 cut(s) 102, 140
Bsu15I ATCGAT 2 cut(s) 245, 342
BsuRI GGCC 2 cut(s) 8, 901
BsuTUI ATCGAT 2 cut(s) 245, 342
BtsCI GGATG 2 cut(s) 725, 778
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 258, 708
BtuMI TCGCGA 2 cut(s) 297, 836
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 5 cut(s) 255, 471, 571, 600, 873
CfoI GCGC 3 cut(s) 176, 191, 598
Cfr10I RCCGGY 2 cut(s) 134, 842
Cfr13I GGNCC 3 cut(s) 335, 497, 899
ClaI ATCGAT 2 cut(s) 245, 342
Csp6I GTAC 1 cut(s) 83
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 4 cut(s) 475, 635, 804, 847
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 70, 237
DpnI GATC 8 cut(s) 104, 142, 214, 220, 248, 341, 492, 862
DpnII GATC 8 cut(s) 102, 140, 212, 218, 246, 339, 490, 860
DriI GACNNNNNGTC 1 cut(s) 704
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 4 cut(s) 26, 35, 686, 926
Eam1105I GACNNNNNGTC 1 cut(s) 704
EarI CTCTTC 4 cut(s) 26, 35, 686, 926
Eco130I CCWWGG 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 335, 497
Eco57I CTGAAG 3 cut(s) 423, 569, 723
Eco88I CYCGRG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 899
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
Esp3I CGTCTC 2 cut(s) 523, 805
FaeI CATG 4 cut(s) 478, 638, 807, 850
FaqI GGGAC 4 cut(s) 78, 100, 348, 835
FatI CATG 4 cut(s) 474, 634, 803, 846
Fnu4HI GCNGC 6 cut(s) 6, 148, 177, 462, 558, 723
FokI GGATG 2 cut(s) 712, 785
Fsp4HI GCNGC 6 cut(s) 6, 148, 177, 462, 558, 723
FspBI CTAG 1 cut(s) 144
GlaI GCGC 3 cut(s) 175, 190, 597
GluI GCNGC 6 cut(s) 6, 148, 177, 462, 558, 723
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 2 cut(s) 8, 901
HapII CCGG 4 cut(s) 135, 216, 672, 843
HhaI GCGC 3 cut(s) 176, 191, 598
Hin1II CATG 4 cut(s) 478, 638, 807, 850
Hin6I GCGC 3 cut(s) 174, 189, 596
HinP1I GCGC 3 cut(s) 174, 189, 596
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 329, 819
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 4 cut(s) 135, 216, 672, 843
HphI GGTGA 3 cut(s) 124, 400, 787
Hpy166II GTNNAC 3 cut(s) 358, 372, 497
Hpy188I TCNGA 2 cut(s) 184, 625
Hpy188III TCNNGA 9 cut(s) 216, 296, 313, 333, 401, 418, 656, 835, 881
Hpy8I GTNNAC 3 cut(s) 358, 372, 497
HpyAV CCTTC 4 cut(s) 35, 136, 310, 373
HpyCH4III ACNGT 2 cut(s) 799, 828
HpyCH4IV ACGT 3 cut(s) 85, 291, 426
HpyCH4V TGCA 6 cut(s) 287, 308, 560, 607, 725, 807
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 173, 470, 479, 566, 604, 719, 764
HpyF3I CTNAG 2 cut(s) 70, 237
HpySE526I ACGT 3 cut(s) 85, 291, 426
Hsp92II CATG 4 cut(s) 478, 638, 807, 850
HspAI GCGC 3 cut(s) 174, 189, 596
Kpn2I TCCGGA 1 cut(s) 215
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 8 cut(s) 102, 140, 212, 218, 246, 339, 490, 860
LguI GCTCTTC 1 cut(s) 686
LmnI GCTCC 3 cut(s) 382, 441, 960
Lsp1109I GCAGC 2 cut(s) 544, 709
LweI GCATC 3 cut(s) 159, 295, 734
MaeI CTAG 1 cut(s) 144
MaeII ACGT 3 cut(s) 85, 291, 426
MaeIII GTNAC 3 cut(s) 119, 637, 706
MalI GATC 8 cut(s) 104, 142, 214, 220, 248, 341, 492, 862
MboI GATC 8 cut(s) 102, 140, 212, 218, 246, 339, 490, 860
MboII GAAGA 9 cut(s) 13, 22, 416, 575, 692, 695, 703, 761, 913
MflI RGATCY 2 cut(s) 102, 140
MluCI AATT 2 cut(s) 78, 413
MroI TCCGGA 1 cut(s) 215
MseI TTAA 4 cut(s) 99, 357, 456, 911
MspI CCGG 4 cut(s) 135, 216, 672, 843
MspR9I CCNGG 1 cut(s) 672
MvnI CGCG 3 cut(s) 174, 297, 836
MwoI GCNNNNNNNGC 8 cut(s) 71, 173, 470, 479, 566, 604, 719, 764
NciI CCSGG 1 cut(s) 672
NdeII GATC 8 cut(s) 102, 140, 212, 218, 246, 339, 490, 860
NlaIII CATG 4 cut(s) 478, 638, 807, 850
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 3 cut(s) 119, 637, 706
NruI TCGCGA 2 cut(s) 297, 836
NspI RCATGY 1 cut(s) 850
PaeR7I CTCGAG 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 686
PfeI GAWTC 2 cut(s) 329, 819
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 6 cut(s) 7, 149, 178, 463, 559, 724
Ple19I CGATCG 1 cut(s) 342
PshBI ATTAAT 1 cut(s) 911
PsiI TTATAA 1 cut(s) 890
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 3 cut(s) 335, 497, 899
PspXI VCTCGAGB 1 cut(s) 227
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 102, 140
PvuI CGATCG 1 cut(s) 342
RruI TCGCGA 2 cut(s) 297, 836
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 686
SaqAI TTAA 4 cut(s) 99, 357, 456, 911
SatI GCNGC 6 cut(s) 6, 148, 177, 462, 558, 723
Sau3AI GATC 8 cut(s) 102, 140, 212, 218, 246, 339, 490, 860
Sau96I GGNCC 3 cut(s) 335, 497, 899
ScrFI CCNGG 1 cut(s) 672
SfaNI GCATC 3 cut(s) 159, 295, 734
SfcI CTRYAG 1 cut(s) 285
Sfr274I CTCGAG 1 cut(s) 227
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 2 cut(s) 335, 497
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 227, 525
SmoI CTYRAG 2 cut(s) 227, 525
Sse9I AATT 2 cut(s) 78, 413
SsiI CCGC 6 cut(s) 5, 147, 172, 177, 462, 894
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 670
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 799, 828
TaiI ACGT 3 cut(s) 88, 294, 429
TaqI TCGA 5 cut(s) 228, 245, 267, 314, 342
TaqII GACCGA 2 cut(s) 143, 352
TasI AATT 2 cut(s) 78, 413
TauI GCSGC 4 cut(s) 8, 150, 179, 464
TfiI GAWTC 2 cut(s) 329, 819
Tru1I TTAA 4 cut(s) 99, 357, 456, 911
Tru9I TTAA 4 cut(s) 99, 357, 456, 911
TscAI CASTG 2 cut(s) 265, 715
TseFI GTSAC 3 cut(s) 119, 637, 706
TseI GCWGC 2 cut(s) 557, 722
Tsp45I GTSAC 3 cut(s) 119, 637, 706
TspDTI ATGAA 4 cut(s) 118, 342, 491, 623
TspRI CASTG 2 cut(s) 265, 715
VpaK11BI GGWCC 2 cut(s) 335, 497
VspI ATTAAT 1 cut(s) 911
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.