Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

33190053 .. 33192707

Gene Structure 2655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGACCCTAACTTCTCCTTCCTTCTCATCCTCCCTCTCGCTCTCCTCCTCCTCCTCCTCTACTTCATCTTCCGCCCCCGCCCCACCACCATCCCAATCAAGAACCGCCACGTCTTCATCACTGGCGGTTCCAGCGGCATCGGCCTCGCTCTAGCCCACCTCGCAGCCTCTGAGGGAGCCAAAGTCTCCATCCTCGCACTACCTTTCGACAAGCTTGAGGAGGCCAAGAACTACATCCAGCTCTCCACTGGCATTGACGTCGCCGTCTTCGCCGCCGATGTCCGTGACTACGACGCAGTTTCAAAGGCTTTTGAGGCGGCGGGCCCGATTGATGTGTTGGTAGTCAACCAGGGAGTGTTTGTGGGCAGGGAGTTAGAGAAGCAAGGATTGGATGAGGTTAGGTTCATGGTGGACGTCAATTTGATGGGTAGTTTCAATGTGATCAAAGCTGCTTTGCCGGGAATGAAAGACAGGAAGGACCGTGGACCGGGTTCAATTGCTCTGATGTCGTCTGTGGCTGGTCAGGCTGGGATTTACGGCTACACGGCTTATTCCGCTAGCAAATTTGGGCTCCGTGGTTTGGCTGAAGCTCTACAACAAGAGGTCATTATAGATGACATTCACGTTTCGCTGATTTTCCCTTCAGCTACTGACACTCCTGGACACACTAAAGAAACTAAGACGAGGCCGCAACTTATCAACACTATAATGGAAACCTATGGTACAATGAAAGCCGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGTAGGGCTTTTGTTGTCCATTGCCACTGCTGGGTTGTCACCCCAGAGATCATTCATCATGGCATTTGTAGAGGTGGCTACTGCTGGTATAATACGGATAATTGCTTTGGGATTTCAGTGGAATTGGTATACATATATACACAAGTGGCATGGACAAAACAAAGGACCTAAAGTTCTTGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

329

Amino Acids

35.59

Weight (kDa)

8.48

Isoelectric Point (pI)

23.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	38 - 228	8.6e-42	short chain dehydrogenase
KR	PF08659	39 - 201	4.5e-09	KR domain
adh_short_C2	PF13561	46 - 240	4.4e-27	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	2 cut(s)	264, 420
AccI	GTMKAC	1 cut(s)	932
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	2 cut(s)	609, 630
AcyI	GRCGYC	2 cut(s)	261, 417
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	3 cut(s)	490, 583, 834
AgsI	TTSAA	3 cut(s)	306, 439, 498
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	351, 661
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 743, 775
AloI	GAACNNNNNNTCC	1 cut(s)	960
AluBI	AGCT	6 cut(s)	217, 244, 452, 593, 650, 758
AluI	AGCT	6 cut(s)	217, 244, 452, 593, 650, 758
Alw26I	GTCTC	1 cut(s)	193
AlwNI	CAGNNNCTG	2 cut(s)	173, 653
AoxI	GGCC	4 cut(s)	145, 225, 325, 689
ApaI	GGGCCC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	167, 452
ApoI	RAATTY	1 cut(s)	566
AspS9I	GGNCC	6 cut(s)	7, 325, 326, 481, 488, 968
AsuC2I	CCSGG	2 cut(s)	462, 492
AsuHPI	GGTGA	1 cut(s)	834
AsuNHI	GCTAGC	1 cut(s)	560
AvaII	GGWCC	4 cut(s)	7, 481, 488, 968
BaeGI	GKGCMC	1 cut(s)	329
BanII	GRGCYC	2 cut(s)	329, 576
BbsI	GAAGAC	2 cut(s)	109, 262
BbvI	GCAGC	2 cut(s)	179, 439
BccI	CCATC	4 cut(s)	101, 200, 421, 758
BceAI	ACGGC	3 cut(s)	251, 556, 564
BcgI	CGANNNNNNTGC	6 cut(s)	130, 164, 244, 278, 728, 762
BciT130I	CCWGG	2 cut(s)	353, 663
BclI	TGATCA	1 cut(s)	444
BcnI	CCSGG	2 cut(s)	462, 492
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	155, 561
BisI	GCNGC	6 cut(s)	139, 168, 276, 321, 453, 692
BlsI	GCNGC	6 cut(s)	140, 169, 277, 322, 454, 693
Bme1390I	CCNGG	4 cut(s)	353, 462, 492, 663
Bme18I	GGWCC	4 cut(s)	7, 481, 488, 968
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	6 cut(s)	7, 325, 326, 481, 488, 968
BmiI	GGNNCC	5 cut(s)	9, 133, 181, 327, 575
BmrFI	CCNGG	4 cut(s)	353, 462, 492, 663
BmsI	GCATC	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	564
BpiI	GAAGAC	2 cut(s)	109, 262
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	462, 492
BsaHI	GRCGYC	2 cut(s)	261, 417
BsaJI	CCNNGG	4 cut(s)	352, 484, 577, 738
BsaXI	ACNNNNNCTCC	6 cut(s)	171, 201, 348, 378, 643, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 583, 834
Bse1I	ACTGG	2 cut(s)	130, 256
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	353, 663
BseDI	CCNNGG	4 cut(s)	352, 484, 577, 738
BseGI	GGATG	6 cut(s)	30, 93, 192, 237, 400, 769
BseLI	CCNNNNNNNGG	3 cut(s)	490, 583, 834
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	130, 256
BseRI	GAGGAG	6 cut(s)	38, 41, 44, 47, 50, 236
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	179, 439
BseYI	CCCAGC	2 cut(s)	530, 833
BshFI	GGCC	4 cut(s)	147, 227, 327, 691
BsiSI	CCGG	2 cut(s)	461, 491
BslI	CCNNNNNNNGG	3 cut(s)	490, 583, 834
BsmAI	GTCTC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	147, 227, 327, 691
Bsp120I	GGGCCC	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	329, 576
Bsp143I	GATC	2 cut(s)	444, 851
BspANI	GGCC	4 cut(s)	147, 227, 327, 691
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	5 cut(s)	9, 133, 181, 327, 575
BspOI	GCTAGC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	130, 256
BssECI	CCNNGG	4 cut(s)	352, 484, 577, 738
BssMI	GATC	2 cut(s)	444, 851
BssNAI	GTATAC	1 cut(s)	933
BssNI	GRCGYC	2 cut(s)	261, 417
Bst1107I	GTATAC	1 cut(s)	933
Bst2UI	CCWGG	2 cut(s)	353, 663
Bst4CI	ACNGT	1 cut(s)	485
BstACI	GRCGYC	2 cut(s)	261, 417
BstC8I	GCNNGC	2 cut(s)	325, 562
BstDEI	CTNAG	2 cut(s)	174, 681
BstDSI	CCRYGG	2 cut(s)	484, 577
BstF5I	GGATG	6 cut(s)	30, 93, 192, 237, 400, 769
BstKTI	GATC	2 cut(s)	447, 854
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	444, 851
BstMWI	GCNNNNNNNGC	8 cut(s)	135, 144, 164, 272, 317, 527, 557, 755
BstNI	CCWGG	2 cut(s)	353, 663
BstSCI	CCNGG	4 cut(s)	351, 460, 490, 661
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	179, 439
BstV2I	GAAGAC	2 cut(s)	109, 262
BstZ17I	GTATAC	1 cut(s)	933
BsuRI	GGCC	4 cut(s)	147, 227, 327, 691
BtgI	CCRYGG	2 cut(s)	484, 577
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	6 cut(s)	30, 93, 192, 237, 400, 769
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	4 cut(s)	123, 249, 828, 926
Cac8I	GCNNGC	2 cut(s)	325, 562
CaiI	CAGNNNCTG	2 cut(s)	173, 653
Cfr13I	GGNCC	6 cut(s)	7, 325, 326, 481, 488, 968
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	726
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	4 cut(s)	409, 862, 953, 987
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	2 cut(s)	174, 681
DpnI	GATC	2 cut(s)	446, 853
DpnII	GATC	2 cut(s)	444, 851
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EciI	GGCGGA	2 cut(s)	20, 65
Eco24I	GRGCYC	2 cut(s)	329, 576
Eco47I	GGWCC	4 cut(s)	7, 481, 488, 968
Eco57I	CTGAAG	2 cut(s)	609, 630
EcoO109I	RGGNCCY	1 cut(s)	968
EcoRII	CCWGG	2 cut(s)	351, 661
EcoT38I	GRGCYC	2 cut(s)	329, 576
FaeI	CATG	4 cut(s)	412, 865, 956, 990
FatI	CATG	4 cut(s)	408, 861, 952, 986
FauI	CCCGC	2 cut(s)	89, 316
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	932
Fnu4HI	GCNGC	6 cut(s)	139, 168, 276, 321, 453, 692
FokI	GGATG	6 cut(s)	17, 80, 179, 224, 407, 776
FriOI	GRGCYC	2 cut(s)	329, 576
Fsp4HI	GCNGC	6 cut(s)	139, 168, 276, 321, 453, 692
FspBI	CTAG	2 cut(s)	155, 561
GluI	GCNGC	6 cut(s)	139, 168, 276, 321, 453, 692
GsaI	CCCAGC	2 cut(s)	534, 837
HaeIII	GGCC	4 cut(s)	147, 227, 327, 691
HapII	CCGG	2 cut(s)	461, 491
HgaI	GACGC	1 cut(s)	305
Hin1I	GRCGYC	2 cut(s)	261, 417
Hin1II	CATG	4 cut(s)	412, 865, 956, 990
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	2 cut(s)	215, 756
HinfI	GANTC	1 cut(s)	768
HpaII	CCGG	2 cut(s)	461, 491
HphI	GGTGA	1 cut(s)	834
Hpy166II	GTNNAC	4 cut(s)	349, 415, 488, 933
Hpy188I	TCNGA	2 cut(s)	175, 507
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	4 cut(s)	349, 415, 488, 933
Hpy99I	CGWCG	2 cut(s)	266, 299
HpyAV	CCTTC	4 cut(s)	31, 35, 472, 654
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	4 cut(s)	114, 261, 417, 627
HpyCH4V	TGCA	2 cut(s)	798, 986
HpyF10VI	GCNNNNNNNGC	8 cut(s)	135, 144, 164, 272, 317, 527, 557, 755
HpyF3I	CTNAG	2 cut(s)	174, 681
HpySE526I	ACGT	4 cut(s)	114, 261, 417, 627
Hsp92I	GRCGYC	2 cut(s)	261, 417
Hsp92II	CATG	4 cut(s)	412, 865, 956, 990
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	444, 851
LmnI	GCTCC	2 cut(s)	179, 579
Lsp1109I	GCAGC	2 cut(s)	179, 439
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	155, 561
MaeII	ACGT	4 cut(s)	114, 261, 417, 627
MaeIII	GTNAC	2 cut(s)	287, 840
MalI	GATC	2 cut(s)	446, 853
MboI	GATC	2 cut(s)	444, 851
MboII	GAAGA	4 cut(s)	64, 109, 262, 763
MfeI	CAATTG	1 cut(s)	498
MhlI	GDGCHC	2 cut(s)	329, 576
MluCI	AATT	5 cut(s)	421, 498, 566, 903, 925
MslI	CAYNNNNRTG	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	2 cut(s)	461, 491
MspR9I	CCNGG	4 cut(s)	353, 462, 492, 663
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	2 cut(s)	353, 663
MwoI	GCNNNNNNNGC	8 cut(s)	135, 144, 164, 272, 317, 527, 557, 755
NciI	CCSGG	2 cut(s)	462, 492
NdeII	GATC	2 cut(s)	444, 851
NheI	GCTAGC	1 cut(s)	560
NlaIII	CATG	4 cut(s)	412, 865, 956, 990
NlaIV	GGNNCC	5 cut(s)	9, 133, 181, 327, 575
NmeAIII	GCCGAG	1 cut(s)	763
NmuCI	GTSAC	2 cut(s)	287, 840
PfeI	GAWTC	1 cut(s)	768
PfoI	TCCNGGA	1 cut(s)	661
PkrI	GCNGC	6 cut(s)	140, 169, 277, 322, 454, 693
PpuMI	RGGWCCY	1 cut(s)	968
Psp5II	RGGWCCY	1 cut(s)	968
Psp6I	CCWGG	2 cut(s)	351, 661
PspFI	CCCAGC	2 cut(s)	530, 833
PspGI	CCWGG	2 cut(s)	351, 661
PspN4I	GGNNCC	5 cut(s)	9, 133, 181, 327, 575
PspOMI	GGGCCC	1 cut(s)	325
PspPI	GGNCC	6 cut(s)	7, 325, 326, 481, 488, 968
PspPPI	RGGWCCY	1 cut(s)	968
PstNI	CAGNNNCTG	2 cut(s)	173, 653
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
RseI	CAYNNNNRTG	1 cut(s)	710
SatI	GCNGC	6 cut(s)	139, 168, 276, 321, 453, 692
Sau3AI	GATC	2 cut(s)	444, 851
Sau96I	GGNCC	6 cut(s)	7, 325, 326, 481, 488, 968
ScrFI	CCNGG	4 cut(s)	353, 462, 492, 663
SduI	GDGCHC	2 cut(s)	329, 576
SfaNI	GCATC	1 cut(s)	150
SinI	GGWCC	4 cut(s)	7, 481, 488, 968
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	421, 498, 566, 903, 925
SspMI	CTAG	2 cut(s)	155, 561
StyD4I	CCNGG	4 cut(s)	351, 460, 490, 661
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	4 cut(s)	117, 264, 420, 630
TaqI	TCGA	1 cut(s)	210
TasI	AATT	5 cut(s)	421, 498, 566, 903, 925
TauI	GCSGC	4 cut(s)	141, 278, 323, 694
TfiI	GAWTC	1 cut(s)	768
TscAI	CASTG	4 cut(s)	130, 256, 835, 926
TseFI	GTSAC	2 cut(s)	287, 840
TseI	GCWGC	2 cut(s)	167, 452
Tsp45I	GTSAC	2 cut(s)	287, 840
TspDTI	ATGAA	6 cut(s)	58, 109, 397, 482, 746, 847
TspGWI	ACGGA	3 cut(s)	275, 566, 913
TspRI	CASTG	4 cut(s)	130, 256, 835, 926
VpaK11BI	GGWCC	4 cut(s)	7, 481, 488, 968
XapI	RAATTY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	932
XspI	CTAG	2 cut(s)	155, 561
ZraI	GACGTC	2 cut(s)	262, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.