Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

38615303 .. 38617826

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTGGACCCCATCTTCTCCTTCCTCCTCCTCCTCCCTCTCGCTCTCCTCCTCCTCCTCTACTTCATTGTCCGCCCCTGCCCCACCACTATCCCAATCAAGAACCGCCACGTCTTCATCACCGGTGGTTCTAGTGGCATTGGCCTCGCCCCGGCCCACCGCGCCGCCTCCGAGGGAGCCAAAGTCTCTATCCTTGCCCGCTCTATTGACAAGCTCGAGGAGGCCAAGAACTACATCCAGCTCTCCACGGGCATGGACGTCACCATCTTTGCTGCGGACGATCACACGGTTCCCCAAAGGCTTCCTAGGCCTAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

106

Amino Acids

11.56

Weight (kDa)

8.93

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	37 - 93	3.6e-09	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	1 cut(s)	162
AciI	CCGC	6 cut(s)	73, 106, 160, 165, 199, 275
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgeI	ACCGGT	1 cut(s)	122
AjiI	CACGTC	1 cut(s)	112
AluBI	AGCT	2 cut(s)	214, 241
AluI	AGCT	2 cut(s)	214, 241
Alw26I	GTCTC	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	4 cut(s)	142, 153, 222, 308
ApeKI	GCWGC	1 cut(s)	272
AsiGI	ACCGGT	1 cut(s)	122
AspA2I	CCTAGG	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	7, 154
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	112, 253
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	7
AvrII	CCTAGG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	20, 272
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	132, 306
BisI	GCNGC	2 cut(s)	165, 273
BlnI	CCTAGG	1 cut(s)	305
BlsI	GCNGC	2 cut(s)	166, 274
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	7, 154
BmiI	GGNNCC	3 cut(s)	9, 178, 291
BmrFI	CCNGG	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	150, 171, 246, 305
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	122
BseDI	CCNNGG	4 cut(s)	150, 171, 246, 305
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseRI	GAGGAG	8 cut(s)	17, 20, 23, 38, 41, 44, 47, 233
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	144, 155, 224, 310
BshTI	ACCGGT	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	123, 152
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	144, 155, 224, 310
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	6 cut(s)	73, 106, 160, 165, 199, 275
BspANI	GGCC	4 cut(s)	144, 155, 224, 310
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	9, 178, 291
BsrBI	CCGCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	4 cut(s)	150, 171, 246, 305
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	199
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 307
BstSCI	CCNGG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	253
BsuRI	GGCC	4 cut(s)	144, 155, 224, 310
BtgI	CCRYGG	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	7, 154
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	8 cut(s)	144, 155, 179, 214, 224, 241, 301, 310
CviKI_1	RGCY	8 cut(s)	144, 155, 179, 214, 224, 241, 301, 310
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	305
Eco147I	AGGCCT	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	1 cut(s)	256
FaiI	YATR	1 cut(s)	254
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	165, 273
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	165, 273
FspBI	CTAG	2 cut(s)	132, 306
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	165, 273
HaeIII	GGCC	4 cut(s)	144, 155, 224, 310
HapII	CCGG	2 cut(s)	123, 152
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HpaII	CCGG	2 cut(s)	123, 152
HphI	GGTGA	2 cut(s)	112, 253
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	2 cut(s)	111, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 307
HpySE526I	ACGT	2 cut(s)	111, 258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	4 cut(s)	91, 136, 165, 251
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	132, 306
MaeII	ACGT	2 cut(s)	111, 258
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	282
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	1 cut(s)	280
MboII	GAAGA	2 cut(s)	7, 106
MseI	TTAA	1 cut(s)	319
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	2 cut(s)	123, 152
MspR9I	CCNGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	161, 307
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	3 cut(s)	9, 178, 291
NmuCI	GTSAC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	166, 274
PspN4I	GGNNCC	3 cut(s)	9, 178, 291
PspPI	GGNCC	2 cut(s)	7, 154
PspXI	VCTCGAGB	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	319
SatI	GCNGC	2 cut(s)	165, 273
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	2 cut(s)	7, 154
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	4 cut(s)	114, 216, 243, 261
Sfr274I	CTCGAG	1 cut(s)	215
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	6 cut(s)	73, 106, 160, 165, 199, 275
SspMI	CTAG	2 cut(s)	132, 306
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	2 cut(s)	114, 261
TaqI	TCGA	1 cut(s)	216
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	55, 106
VpaK11BI	GGWCC	1 cut(s)	7
XhoI	CTCGAG	1 cut(s)	215
XmaJI	CCTAGG	1 cut(s)	305
XspI	CTAG	2 cut(s)	132, 306
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.