Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

35329189 .. 35330908

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG190200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGGTCGCAACTTATCAAAACTATAACGGAAACCTATGGTACAATGAAAGCTGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCCTGCAACTATGTAGGGCTTTTGTTGTCCATTGCCACTGCTGGGTTGTCACCCCAGAGATCATTCATCATGGCATTTGTAGAGGTGGCTGCTGCTAGTATAATACGGATAATTGCTTTGGGATTTCAGTGGAATTGGTATACATATATACACAAGTGGCATGGACAAAACAAAGGACCTAAAGTTCTTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

101

Amino Acids

11.15

Weight (kDa)

9.72

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	1 cut(s)	276
AluBI	AGCT	2 cut(s)	53, 74
AluI	AGCT	2 cut(s)	53, 74
ApeKI	GCWGC	3 cut(s)	197, 200, 299
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	184, 187, 286
BccI	CCATC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	3 cut(s)	198, 201, 300
BlsI	GCNGC	3 cut(s)	199, 202, 301
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	3 cut(s)	184, 187, 286
BseYI	CCCAGC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	138
BssMI	GATC	1 cut(s)	167
BssNAI	GTATAC	1 cut(s)	249
Bst1107I	GTATAC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	184, 187, 286
BstZ17I	GTATAC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 242
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	3 cut(s)	178, 269, 303
CviJI	RGCY	4 cut(s)	53, 74, 127, 197
CviKI_1	RGCY	4 cut(s)	53, 74, 127, 197
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	284
FaeI	CATG	3 cut(s)	181, 272, 306
FatI	CATG	3 cut(s)	177, 268, 302
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	198, 201, 300
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	198, 201, 300
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	3 cut(s)	198, 201, 300
GsaI	CCCAGC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	181, 272, 306
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	1 cut(s)	84
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	249
Hpy8I	GTNNAC	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	114, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	181, 272, 306
Kzo9I	GATC	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	124, 135, 176
Lsp1109I	GCAGC	3 cut(s)	184, 187, 286
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	219, 241
MnlI	CCTC	2 cut(s)	49, 184
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	181, 272, 306
NmuCI	GTSAC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	199, 202, 301
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	284
PspPPI	RGGWCCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SatI	GCNGC	3 cut(s)	198, 201, 300
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	8, 38, 55, 76, 195, 289
SgeI	CNNG	8 cut(s)	100, 123, 162, 175, 190, 216, 274, 281
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	219, 241
SspMI	CTAG	1 cut(s)	204
TasI	AATT	2 cut(s)	219, 241
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	151, 242
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	3 cut(s)	197, 200, 299
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	62, 163
TspGWI	ACGGA	2 cut(s)	44, 229
TspRI	CASTG	2 cut(s)	151, 242
VpaK11BI	GGWCC	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.