Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

31819820 .. 31872401

Gene Structure 52582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG180400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGCAATTACTTGAGAAGCAAGACCCTTGTCGACTTATCCTTGAAACTAAGACGAGGCCGCAACTTATCAACACTATAATGGAAACCTATGGTACAATGAAAGCCGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGTAGGGCTTTTGTTGTCCATTGCCACTGCTGGGTTGTCACCCCAGAGATCATTCATCATGGCATTTGTAGAGGTGGCTACTGCTGGTATAATACGGATAATTGCTTTGGGATTTCAGTGGAATTGGTATACATATATACACAAGTGGCATGGACAAAACAAAGGACCTAAAGTTCTTGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

119

Amino Acids

13.32

Weight (kDa)

9.23

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	34, 302
AciI	CCGC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	47
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AloI	GAACNNNNNNTCC	1 cut(s)	330
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AoxI	GGCC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	338
BccI	CCATC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BoxI	GACNNNNGTC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	204
BsnI	GGCC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	221
BssNAI	GTATAC	1 cut(s)	303
Bst1107I	GTATAC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	30
BstZ17I	GTATAC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 296
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	232, 323, 357
CviJI	RGCY	5 cut(s)	61, 107, 128, 181, 251
CviKI_1	RGCY	5 cut(s)	61, 107, 128, 181, 251
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	338
FaeI	CATG	3 cut(s)	235, 326, 360
FatI	CATG	3 cut(s)	231, 322, 356
FblI	GTMKAC	2 cut(s)	34, 302
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	61
Hin1II	CATG	3 cut(s)	235, 326, 360
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	1 cut(s)	138
HphI	GGTGA	1 cut(s)	204
Hpy166II	GTNNAC	2 cut(s)	35, 303
Hpy8I	GTNNAC	2 cut(s)	35, 303
HpyCH4V	TGCA	2 cut(s)	168, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	235, 326, 360
Kzo9I	GATC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	189, 230, 243
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	3 cut(s)	8, 273, 295
MnlI	CCTC	3 cut(s)	51, 103, 238
MslI	CAYNNNNRTG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	3 cut(s)	235, 326, 360
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	63
PpuMI	RGGWCCY	1 cut(s)	338
PshAI	GACNNNNGTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	338
PspPPI	RGGWCCY	1 cut(s)	338
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	338
SetI	ASST	4 cut(s)	92, 130, 249, 343
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	8, 273, 295
SsiI	CCGC	1 cut(s)	62
TaqI	TCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	8, 273, 295
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	138
TscAI	CASTG	2 cut(s)	205, 296
TseFI	GTSAC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	116, 217
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	205, 296
VpaK11BI	GGWCC	1 cut(s)	338
XmiI	GTMKAC	2 cut(s)	34, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.