Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

36872770 .. 36886916

Gene Structure 14147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG211600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGCCAGAAGAAGTCGACTGGGCTGAAGTTTCAACACCAAAGTACGAGTTATCAGGAGAATACCTGAAAACAAACTACTACGGCACAAAAGGAGTGACAGAGGCACTTTTGCCCCCCTTGAGCTATCCGATCACAAACAAAAAAAAACCAGCAGCAAAGCGCAGCGGCATCGGCCTCGCCCTGGCCCACCGCGCCGCCTCCGAGGGCGCCAAAGTCTCCATCCTCGCCCGCTCCCTCGACAAGCTCGAGGAGGCCAAGAATTACATCCAGCTCTCCACTGGCATTGACGTTGCCATCTTCGCTGCCGACGTCCGTGACTATGACGCCGTTTCTAAGGCCATCGAGGTGGCGGGTCCGATCGATGTGTTGGTCGTCAACCAGGGAGTATTCGTCCCTGGGGAGCTGGAGAAGCAGGGATTGGATGAGGTGAGGTTCATGGTGGATGTCAATTTGATGGAAACTAAGAAGAGGCCGCAGCTGACCAGCATTATTGCGGAATCATCTGGTGCAATGAAAGCCGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCCATTGCCACTGCCGGGTTGTCGCCTCAGAGATCATTCCTCATGGCATTTGTGGAGGTGGTTGCTGCTGGTGTAATACGGATAGCTGCTCTGGGATTTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

252

Amino Acids

27.43

Weight (kDa)

7.75

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	52 - 153	6e-10	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	55 - 153	1.8e-14	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	234
AccI	GTMKAC	3 cut(s)	18, 716, 724
AccII	CGCG	1 cut(s)	195
AciI	CCGC	7 cut(s)	168, 193, 198, 232, 353, 476, 497
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	3 cut(s)	210, 312, 327
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	184, 618
AgsI	TTSAA	2 cut(s)	36, 590
AjnI	CCWGG	3 cut(s)	183, 381, 397
AjuI	GAANNNNNNNTTGG	4 cut(s)	404, 436, 527, 559
AluBI	AGCT	7 cut(s)	126, 247, 274, 406, 481, 542, 689
AluI	AGCT	7 cut(s)	126, 247, 274, 406, 481, 542, 689
Alw26I	GTCTC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	5 cut(s)	175, 186, 255, 339, 473
ApeKI	GCWGC	6 cut(s)	155, 165, 305, 478, 668, 689
AspLEI	GCGC	3 cut(s)	165, 197, 212
AspS9I	GGNCC	3 cut(s)	187, 356, 753
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	356, 753
BanI	GGYRCC	1 cut(s)	209
BbvI	GCAGC	6 cut(s)	167, 177, 292, 490, 655, 676
BccI	CCATC	5 cut(s)	230, 305, 350, 451, 542
BceAI	ACGGC	2 cut(s)	100, 314
BcgI	CGANNNNNNTGC	6 cut(s)	154, 160, 188, 194, 512, 546
BciT130I	CCWGG	3 cut(s)	185, 383, 399
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	9 cut(s)	156, 166, 169, 198, 306, 476, 479, 669, 690
BlsI	GCNGC	9 cut(s)	157, 167, 170, 199, 307, 477, 480, 670, 691
Bme1390I	CCNGG	4 cut(s)	185, 383, 399, 619
Bme18I	GGWCC	2 cut(s)	356, 753
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	187, 356, 753
BmiI	GGNNCC	2 cut(s)	211, 357
BmrFI	CCNGG	4 cut(s)	185, 383, 399, 619
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	619
Bsa29I	ATCGAT	1 cut(s)	363
BsaHI	GRCGYC	3 cut(s)	210, 312, 327
BsaJI	CCNNGG	6 cut(s)	183, 204, 382, 397, 398, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 618
Bse1I	ACTGG	2 cut(s)	26, 286
Bse3DI	GCAATG	2 cut(s)	519, 606
BseBI	CCWGG	3 cut(s)	185, 383, 399
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	6 cut(s)	183, 204, 382, 397, 398, 522
BseGI	GGATG	5 cut(s)	222, 267, 430, 451, 553
BseLI	CCNNNNNNNGG	2 cut(s)	184, 618
BseMI	GCAATG	2 cut(s)	519, 606
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	2 cut(s)	26, 286
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	6 cut(s)	167, 177, 292, 490, 655, 676
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	5 cut(s)	177, 188, 257, 341, 475
BshNI	GGYRCC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	184, 618
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	5 cut(s)	177, 188, 257, 341, 475
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	132, 360, 635
BspACI	CCGC	7 cut(s)	168, 193, 198, 232, 353, 476, 497
BspANI	GGCC	5 cut(s)	177, 188, 257, 341, 475
BspCNI	CTCAG	1 cut(s)	643
BspDI	ATCGAT	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	211, 357
BspT107I	GGYRCC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	519, 606
BsrI	ACTGG	2 cut(s)	26, 286
BssECI	CCNNGG	6 cut(s)	183, 204, 382, 397, 398, 522
BssMI	GATC	3 cut(s)	132, 360, 635
BssNAI	GTATAC	2 cut(s)	717, 725
BssNI	GRCGYC	3 cut(s)	210, 312, 327
Bst1107I	GTATAC	2 cut(s)	717, 725
Bst2UI	CCWGG	3 cut(s)	185, 383, 399
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	3 cut(s)	210, 312, 327
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	3 cut(s)	336, 465, 630
BstF5I	GGATG	5 cut(s)	222, 267, 430, 451, 553
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	165, 197, 212
BstKTI	GATC	3 cut(s)	135, 363, 638
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	132, 360, 635
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	6 cut(s)	174, 194, 302, 412, 518, 539
BstNI	CCWGG	3 cut(s)	185, 383, 399
BstSCI	CCNGG	4 cut(s)	183, 381, 397, 617
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	6 cut(s)	167, 177, 292, 490, 655, 676
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstZ17I	GTATAC	2 cut(s)	717, 725
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	5 cut(s)	177, 188, 257, 341, 475
BsuTUI	ATCGAT	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	222, 267, 430, 451, 553
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	279, 612, 710
Cac8I	GCNNGC	1 cut(s)	232
CfoI	GCGC	3 cut(s)	165, 197, 212
Cfr13I	GGNCC	3 cut(s)	187, 356, 753
ClaI	ATCGAT	1 cut(s)	363
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	3 cut(s)	439, 646, 737
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	3 cut(s)	336, 465, 630
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	3 cut(s)	134, 362, 637
DpnII	GATC	3 cut(s)	132, 360, 635
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco47I	GGWCC	2 cut(s)	356, 753
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	753
EcoRII	CCWGG	3 cut(s)	183, 381, 397
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
FaeI	CATG	3 cut(s)	442, 649, 740
FaiI	YATR	6 cut(s)	324, 440, 647, 717, 725, 738
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	3 cut(s)	438, 645, 736
FauI	CCCGC	2 cut(s)	239, 346
FblI	GTMKAC	3 cut(s)	18, 716, 724
Fnu4HI	GCNGC	9 cut(s)	156, 166, 169, 198, 306, 476, 479, 669, 690
FokI	GGATG	5 cut(s)	209, 254, 437, 458, 560
Fsp4HI	GCNGC	9 cut(s)	156, 166, 169, 198, 306, 476, 479, 669, 690
GlaI	GCGC	3 cut(s)	164, 196, 211
GluI	GCNGC	9 cut(s)	156, 166, 169, 198, 306, 476, 479, 669, 690
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	5 cut(s)	177, 188, 257, 341, 475
HapII	CCGG	1 cut(s)	618
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	3 cut(s)	165, 197, 212
Hin1I	GRCGYC	3 cut(s)	210, 312, 327
Hin1II	CATG	3 cut(s)	442, 649, 740
Hin6I	GCGC	3 cut(s)	163, 195, 210
HinP1I	GCGC	3 cut(s)	163, 195, 210
HincII	GTYRAC	2 cut(s)	19, 379
HindII	GTYRAC	2 cut(s)	19, 379
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	2 cut(s)	500, 552
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	4 cut(s)	19, 379, 717, 725
Hpy188I	TCNGA	4 cut(s)	132, 205, 360, 633
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	4 cut(s)	19, 379, 717, 725
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	584
HpyCH4IV	ACGT	2 cut(s)	291, 312
HpyCH4V	TGCA	2 cut(s)	512, 582
HpyF10VI	GCNNNNNNNGC	6 cut(s)	174, 194, 302, 412, 518, 539
HpyF3I	CTNAG	3 cut(s)	336, 465, 630
HpySE526I	ACGT	2 cut(s)	291, 312
Hsp92I	GRCGYC	3 cut(s)	210, 312, 327
Hsp92II	CATG	3 cut(s)	442, 649, 740
HspAI	GCGC	3 cut(s)	163, 195, 210
KasI	GGCGCC	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	132, 360, 635
LmnI	GCTCC	2 cut(s)	239, 403
Lsp1109I	GCAGC	6 cut(s)	167, 177, 292, 490, 655, 676
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	2 cut(s)	291, 312
MaeIII	GTNAC	2 cut(s)	97, 317
MalI	GATC	3 cut(s)	134, 362, 637
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	3 cut(s)	132, 360, 635
MboII	GAAGA	4 cut(s)	23, 292, 481, 547
MluCI	AATT	3 cut(s)	262, 451, 709
Mly113I	GGCGCC	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	2 cut(s)	168, 481
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	4 cut(s)	185, 383, 399, 619
MvaI	CCWGG	3 cut(s)	185, 383, 399
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	6 cut(s)	174, 194, 302, 412, 518, 539
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	619
NdeII	GATC	3 cut(s)	132, 360, 635
NlaIII	CATG	3 cut(s)	442, 649, 740
NlaIV	GGNNCC	2 cut(s)	211, 357
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	2 cut(s)	97, 317
PaeR7I	CTCGAG	1 cut(s)	248
PasI	CCCWGGG	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 309
PfeI	GAWTC	2 cut(s)	500, 552
PkrI	GCNGC	9 cut(s)	157, 167, 170, 199, 307, 477, 480, 670, 691
Ple19I	CGATCG	1 cut(s)	363
PluTI	GGCGCC	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	753
Psp6I	CCWGG	3 cut(s)	183, 381, 397
PspGI	CCWGG	3 cut(s)	183, 381, 397
PspN4I	GGNNCC	2 cut(s)	211, 357
PspPI	GGNCC	3 cut(s)	187, 356, 753
PspPPI	RGGWCCY	1 cut(s)	753
PspXI	VCTCGAGB	1 cut(s)	248
PvuI	CGATCG	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	347
SalI	GTCGAC	1 cut(s)	17
SatI	GCNGC	9 cut(s)	156, 166, 169, 198, 306, 476, 479, 669, 690
Sau3AI	GATC	3 cut(s)	132, 360, 635
Sau96I	GGNCC	3 cut(s)	187, 356, 753
ScrFI	CCNGG	4 cut(s)	185, 383, 399, 619
SfaNI	GCATC	1 cut(s)	180
SfoI	GGCGCC	1 cut(s)	211
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	2 cut(s)	356, 753
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	121, 248
SmoI	CTYRAG	2 cut(s)	121, 248
Sse9I	AATT	3 cut(s)	262, 451, 709
SsiI	CCGC	7 cut(s)	168, 193, 198, 232, 353, 476, 497
SspDI	GGCGCC	1 cut(s)	209
StyD4I	CCNGG	4 cut(s)	183, 381, 397, 617
TaiI	ACGT	2 cut(s)	294, 315
TaqI	TCGA	5 cut(s)	18, 240, 249, 345, 363
TasI	AATT	3 cut(s)	262, 451, 709
TauI	GCSGC	3 cut(s)	171, 200, 478
TfiI	GAWTC	2 cut(s)	500, 552
TscAI	CASTG	3 cut(s)	286, 619, 710
TseFI	GTSAC	2 cut(s)	97, 317
TseI	GCWGC	6 cut(s)	155, 165, 305, 478, 668, 689
Tsp45I	GTSAC	2 cut(s)	97, 317
TspDTI	ATGAA	3 cut(s)	17, 427, 530
TspGWI	ACGGA	2 cut(s)	305, 697
TspRI	CASTG	3 cut(s)	286, 619, 710
VpaK11BI	GGWCC	2 cut(s)	356, 753
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	248
XmiI	GTMKAC	3 cut(s)	18, 716, 724
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.