Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

38692865 .. 38695934

Gene Structure 3070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAAGCCGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGTAACATTGTAGGGCTTTTCTTGTCCATTGCCGGTGTTGGGTTGTCACCCCGAGAGATCATTCATCATGGCATTTATGGAGGTGGTTGCTGGTGGTATAATACGGATAGCTGCTGCGGGATTTCGGTGGAATTGGTATACAACTATACTCAAGTGGCATGGACAAAACAAACCCACGCGACGCCACTAGTGGCAGCACGTGAGGGCGCATGCCGCCTCTTCGGCCTTCTCGCCTTAGGCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

103

Amino Acids

11.08

Weight (kDa)

8.33

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	183, 280
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	105
AhlI	ACTAGT	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	2 cut(s)	29, 177
AluI	AGCT	2 cut(s)	29, 177
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	2 cut(s)	289, 304
ApeKI	GCWGC	3 cut(s)	177, 180, 260
AspLEI	GCGC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	105
AvaI	CYCGRG	1 cut(s)	117
AxyI	CCTNAGG	1 cut(s)	301
BbrPI	CACGTG	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	164, 167, 272
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	253
BfaI	CTAG	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	4 cut(s)	178, 181, 261, 280
BlsI	GCNGC	4 cut(s)	179, 182, 262, 281
BmeT110I	CYCGRG	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	164, 167, 272
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	291, 306
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	105
BsnI	GGCC	2 cut(s)	291, 306
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	2 cut(s)	183, 280
BspANI	GGCC	2 cut(s)	291, 306
BspFNI	CGCG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	123
BssNAI	GTATAC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	248
Bst1107I	GTATAC	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 279, 288
BstNSI	RCATGY	1 cut(s)	279
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	164, 167, 272
BstZ17I	GTATAC	1 cut(s)	205
Bsu36I	CCTNAGG	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	291, 306
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	98
CseI	GACGC	1 cut(s)	256
CviAII	CATG	3 cut(s)	134, 225, 276
CviJI	RGCY	6 cut(s)	8, 29, 82, 177, 291, 306
CviKI_1	RGCY	6 cut(s)	8, 29, 82, 177, 291, 306
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco72I	CACGTG	1 cut(s)	266
Eco81I	CCTNAGG	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	117
FaeI	CATG	3 cut(s)	137, 228, 279
FaiI	YATR	7 cut(s)	135, 144, 165, 205, 213, 226, 277
FatI	CATG	3 cut(s)	133, 224, 275
FauI	CCCGC	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	178, 181, 261, 280
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	178, 181, 261, 280
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	178, 181, 261, 280
HaeIII	GGCC	2 cut(s)	291, 306
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	137, 228, 279
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 279, 288
HpyF3I	CTNAG	1 cut(s)	301
HpySE526I	ACGT	1 cut(s)	265
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	137, 228, 279
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	123
LpnPI	CCDG	2 cut(s)	112, 142
Lsp1109I	GCAGC	3 cut(s)	164, 167, 272
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	68, 111
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	34, 277
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	4 cut(s)	4, 140, 262, 293
MspI	CCGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	26, 279, 288
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	3 cut(s)	137, 228, 279
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	179, 182, 262, 281
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	266
PspCI	CACGTG	1 cut(s)	266
SatI	GCNGC	4 cut(s)	178, 181, 261, 280
Sau3AI	GATC	1 cut(s)	123
SetI	ASST	4 cut(s)	31, 151, 179, 268
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SpeI	ACTAGT	1 cut(s)	253
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	183, 280
SspMI	CTAG	1 cut(s)	254
TaiI	ACGT	1 cut(s)	268
TasI	AATT	1 cut(s)	197
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	3 cut(s)	177, 180, 260
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	17, 119
TspGWI	ACGGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.