Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

31428141 .. 31430692

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGGACCCCAACTTCTCCTTCCTTCTCATCCTCCCTCTCGCTCTCCTCCTCCTTTTCTACTTCATCGTCCGCCCCCGCCCCACCACCATCCCAATCAAGAACCGCCACGTCTTCATCACCGGCCGTTCCAGCGGCATCGGCCTCGCCCTGGCCCACCTCGCAGCCGCTGAGGGAGCCAAAGTCTCCATCCTCGCACTACCTTTCGACAAGCTTGAGGAGGCCAAGAACTACATCCAGCTCTCCACTGGCATTGACGTCGCCGTCTTCGCCGCCGATGTCCGTGACTACGACGCAGTTTCAAAGGCTATTGAGGCGGCGGGCCCGATTGAGGTGTTGGTAGTCAACCAAGGAGTGTTTGTGGGCAGGGAGTTAGAGAAGCAAGGATTGGATGAGGTCAGGTTCATGGTGGACGTCAATTTGATGGGTAGTTTCAATGTGATCAAAGCTGCTTTGCCGGGAATGAAAGACAGGAAGGACCGTGGACCGGGTTCGATTGCTCTGATGTTATCTGTGGCTGGTCAGGCTGGGATTTACGGCTACACGGCTTATTCCGCTAGCAAATTTGGGCTCCGTGGTTTGGCTGAAGCTCTACAGCAAGAGGTCATTATAGATGACATTCATGTTTCACTGATTTTCCCTTCAGCTACTGACACTCCTGGACACACTAAAGAAACTAAGACGAGGCCGCAACTTATCAACACTATAATGGAAACTTATAGTACAATGAAAGCCGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTCTTGTGCCTTGCAACTTTGTAGGGCTTTTGTTGTCCATTGCCACTGTTGGGTTGTCACCCCAGAGATCATTCATCATGGCATTTGTAGAGGTGGCTGCTGCTAGTATAATACGGATAATTGCTTTGGGATTTCAGTGGAATTGGTATACATATATACACAAGTGGCATGAACAAAACAAAGTAAGGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

324

Amino Acids

35.37

Weight (kDa)

8.49

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	37 - 227	3.8e-39	short chain dehydrogenase
KR	PF08659	38 - 200	3.7e-06	KR domain
adh_short_C2	PF13561	44 - 249	7.5e-25	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	2 cut(s)	261, 417
AccI	GTMKAC	1 cut(s)	929
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	2 cut(s)	606, 627
AcyI	GRCGYC	2 cut(s)	258, 414
AfaI	GTAC	1 cut(s)	724
AfiI	CCNNNNNNNGG	5 cut(s)	151, 331, 487, 580, 831
AgsI	TTSAA	2 cut(s)	303, 436
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	150, 658
AjuI	GAANNNNNNNTTGG	5 cut(s)	37, 371, 403, 740, 772
AluBI	AGCT	6 cut(s)	214, 241, 449, 590, 647, 755
AluI	AGCT	6 cut(s)	214, 241, 449, 590, 647, 755
Alw26I	GTCTC	1 cut(s)	190
AlwNI	CAGNNNCTG	2 cut(s)	170, 650
AoxI	GGCC	6 cut(s)	124, 142, 153, 222, 322, 686
ApaI	GGGCCC	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	164, 449, 878, 881
ApoI	RAATTY	1 cut(s)	563
AspS9I	GGNCC	7 cut(s)	7, 154, 322, 323, 478, 485, 969
AsuC2I	CCSGG	2 cut(s)	459, 489
AsuHPI	GGTGA	2 cut(s)	112, 831
AsuNHI	GCTAGC	1 cut(s)	557
AvaII	GGWCC	4 cut(s)	7, 478, 485, 969
BaeGI	GKGCMC	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	326, 573
BbsI	GAAGAC	2 cut(s)	106, 259
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	4 cut(s)	176, 436, 865, 868
BccI	CCATC	4 cut(s)	98, 197, 418, 755
BceAI	ACGGC	4 cut(s)	111, 248, 553, 561
BcgI	CGANNNNNNTGC	6 cut(s)	127, 161, 241, 275, 725, 759
BciT130I	CCWGG	2 cut(s)	152, 660
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	2 cut(s)	459, 489
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	558, 885
BfmI	CTRYAG	1 cut(s)	593
BisI	GCNGC	9 cut(s)	136, 165, 168, 273, 318, 450, 689, 879, 882
BlsI	GCNGC	9 cut(s)	137, 166, 169, 274, 319, 451, 690, 880, 883
Bme1390I	CCNGG	4 cut(s)	152, 459, 489, 660
Bme18I	GGWCC	4 cut(s)	7, 478, 485, 969
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	7 cut(s)	7, 154, 322, 323, 478, 485, 969
BmiI	GGNNCC	4 cut(s)	9, 178, 324, 572
BmrFI	CCNGG	4 cut(s)	152, 459, 489, 660
BmsI	GCATC	1 cut(s)	147
BmtI	GCTAGC	1 cut(s)	561
BpiI	GAAGAC	2 cut(s)	106, 259
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	459, 489
BsaHI	GRCGYC	2 cut(s)	258, 414
BsaJI	CCNNGG	5 cut(s)	150, 349, 481, 574, 735
BsaXI	ACNNNNNCTCC	6 cut(s)	168, 198, 345, 375, 640, 670
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 331, 487, 580, 831
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	152, 660
BseDI	CCNNGG	5 cut(s)	150, 349, 481, 574, 735
BseGI	GGATG	6 cut(s)	30, 90, 189, 234, 397, 766
BseLI	CCNNNNNNNGG	5 cut(s)	151, 331, 487, 580, 831
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	3 cut(s)	38, 41, 233
BseSI	GKGCMC	1 cut(s)	326
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	4 cut(s)	176, 436, 865, 868
BseYI	CCCAGC	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	6 cut(s)	126, 144, 155, 224, 324, 688
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	123, 458, 488
BslI	CCNNNNNNNGG	5 cut(s)	151, 331, 487, 580, 831
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	6 cut(s)	126, 144, 155, 224, 324, 688
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	326, 573
Bsp143I	GATC	2 cut(s)	441, 848
BspANI	GGCC	6 cut(s)	126, 144, 155, 224, 324, 688
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	9, 178, 324, 572
BspOI	GCTAGC	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	819
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	150, 349, 481, 574, 735
BssMI	GATC	2 cut(s)	441, 848
BssNAI	GTATAC	1 cut(s)	930
BssNI	GRCGYC	2 cut(s)	258, 414
BssT1I	CCWWGG	1 cut(s)	349
Bst1107I	GTATAC	1 cut(s)	930
Bst2UI	CCWGG	2 cut(s)	152, 660
Bst4CI	ACNGT	2 cut(s)	482, 829
BstACI	GRCGYC	2 cut(s)	258, 414
BstC8I	GCNNGC	2 cut(s)	322, 559
BstDEI	CTNAG	2 cut(s)	171, 678
BstDSI	CCRYGG	2 cut(s)	481, 574
BstF5I	GGATG	6 cut(s)	30, 90, 189, 234, 397, 766
BstKTI	GATC	2 cut(s)	444, 851
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	441, 848
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	9 cut(s)	132, 141, 161, 176, 269, 314, 524, 554, 752
BstNI	CCWGG	2 cut(s)	152, 660
BstSCI	CCNGG	4 cut(s)	150, 457, 487, 658
BstSFI	CTRYAG	1 cut(s)	593
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	4 cut(s)	176, 436, 865, 868
BstV2I	GAAGAC	2 cut(s)	106, 259
BstZ17I	GTATAC	1 cut(s)	930
BstZI	CGGCCG	1 cut(s)	124
BsuRI	GGCC	6 cut(s)	126, 144, 155, 224, 324, 688
BtgI	CCRYGG	2 cut(s)	481, 574
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	6 cut(s)	30, 90, 189, 234, 397, 766
BtsIMutI	CAGTG	4 cut(s)	246, 629, 825, 923
Cac8I	GCNNGC	2 cut(s)	322, 559
CaiI	CAGNNNCTG	2 cut(s)	170, 650
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	7 cut(s)	7, 154, 322, 323, 478, 485, 969
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	723
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	4 cut(s)	406, 623, 859, 950
CviQI	GTAC	1 cut(s)	723
DdeI	CTNAG	2 cut(s)	171, 678
DpnI	GATC	2 cut(s)	443, 850
DpnII	GATC	2 cut(s)	441, 848
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	124
EagI	CGGCCG	1 cut(s)	124
EciI	GGCGGA	2 cut(s)	20, 62
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	349
Eco24I	GRGCYC	2 cut(s)	326, 573
Eco47I	GGWCC	4 cut(s)	7, 478, 485, 969
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	606, 627
EcoO109I	RGGNCCY	1 cut(s)	969
EcoRII	CCWGG	2 cut(s)	150, 658
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	326, 573
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	4 cut(s)	409, 626, 862, 953
FatI	CATG	4 cut(s)	405, 622, 858, 949
FauI	CCCGC	2 cut(s)	86, 313
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	929
Fnu4HI	GCNGC	9 cut(s)	136, 165, 168, 273, 318, 450, 689, 879, 882
FokI	GGATG	6 cut(s)	17, 77, 176, 221, 404, 773
FriOI	GRGCYC	2 cut(s)	326, 573
Fsp4HI	GCNGC	9 cut(s)	136, 165, 168, 273, 318, 450, 689, 879, 882
FspBI	CTAG	2 cut(s)	558, 885
GluI	GCNGC	9 cut(s)	136, 165, 168, 273, 318, 450, 689, 879, 882
GsaI	CCCAGC	1 cut(s)	531
HaeIII	GGCC	6 cut(s)	126, 144, 155, 224, 324, 688
HapII	CCGG	3 cut(s)	123, 458, 488
HgaI	GACGC	1 cut(s)	302
Hin1I	GRCGYC	2 cut(s)	258, 414
Hin1II	CATG	4 cut(s)	409, 626, 862, 953
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	2 cut(s)	212, 753
HinfI	GANTC	1 cut(s)	765
HpaII	CCGG	3 cut(s)	123, 458, 488
HphI	GGTGA	2 cut(s)	112, 831
Hpy166II	GTNNAC	4 cut(s)	346, 412, 485, 930
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	4 cut(s)	346, 412, 485, 930
Hpy99I	CGWCG	2 cut(s)	263, 296
HpyAV	CCTTC	4 cut(s)	31, 35, 469, 651
HpyCH4III	ACNGT	2 cut(s)	482, 829
HpyCH4IV	ACGT	3 cut(s)	111, 258, 414
HpyCH4V	TGCA	1 cut(s)	795
HpyF10VI	GCNNNNNNNGC	9 cut(s)	132, 141, 161, 176, 269, 314, 524, 554, 752
HpyF3I	CTNAG	2 cut(s)	171, 678
HpySE526I	ACGT	3 cut(s)	111, 258, 414
Hsp92I	GRCGYC	2 cut(s)	258, 414
Hsp92II	CATG	4 cut(s)	409, 626, 862, 953
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	2 cut(s)	441, 848
LmnI	GCTCC	2 cut(s)	176, 576
Lsp1109I	GCAGC	4 cut(s)	176, 436, 865, 868
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	558, 885
MaeII	ACGT	3 cut(s)	111, 258, 414
MaeIII	GTNAC	2 cut(s)	284, 837
MalI	GATC	2 cut(s)	443, 850
MboI	GATC	2 cut(s)	441, 848
MboII	GAAGA	3 cut(s)	106, 259, 760
MhlI	GDGCHC	2 cut(s)	326, 573
MluCI	AATT	4 cut(s)	418, 563, 900, 922
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	2 cut(s)	135, 170
MspI	CCGG	3 cut(s)	123, 458, 488
MspR9I	CCNGG	4 cut(s)	152, 459, 489, 660
MvaI	CCWGG	2 cut(s)	152, 660
MwoI	GCNNNNNNNGC	9 cut(s)	132, 141, 161, 176, 269, 314, 524, 554, 752
NciI	CCSGG	2 cut(s)	459, 489
NdeII	GATC	2 cut(s)	441, 848
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	4 cut(s)	409, 626, 862, 953
NlaIV	GGNNCC	4 cut(s)	9, 178, 324, 572
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	284, 837
PfeI	GAWTC	1 cut(s)	765
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	9 cut(s)	137, 166, 169, 274, 319, 451, 690, 880, 883
PpuMI	RGGWCCY	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	969
Psp6I	CCWGG	2 cut(s)	150, 658
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	2 cut(s)	150, 658
PspN4I	GGNNCC	4 cut(s)	9, 178, 324, 572
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	7 cut(s)	7, 154, 322, 323, 478, 485, 969
PspPPI	RGGWCCY	1 cut(s)	969
PstNI	CAGNNNCTG	2 cut(s)	170, 650
RsaI	GTAC	1 cut(s)	724
RsaNI	GTAC	1 cut(s)	723
RseI	CAYNNNNRTG	1 cut(s)	707
SatI	GCNGC	9 cut(s)	136, 165, 168, 273, 318, 450, 689, 879, 882
Sau3AI	GATC	2 cut(s)	441, 848
Sau96I	GGNCC	7 cut(s)	7, 154, 322, 323, 478, 485, 969
ScrFI	CCNGG	4 cut(s)	152, 459, 489, 660
SduI	GDGCHC	2 cut(s)	326, 573
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	593
SinI	GGWCC	4 cut(s)	7, 478, 485, 969
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	4 cut(s)	418, 563, 900, 922
SspMI	CTAG	2 cut(s)	558, 885
StyD4I	CCNGG	4 cut(s)	150, 457, 487, 658
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	482, 829
TaiI	ACGT	3 cut(s)	114, 261, 417
TaqI	TCGA	2 cut(s)	207, 494
TasI	AATT	4 cut(s)	418, 563, 900, 922
TatI	WGTACW	1 cut(s)	722
TauI	GCSGC	5 cut(s)	138, 170, 275, 320, 691
TfiI	GAWTC	1 cut(s)	765
TscAI	CASTG	4 cut(s)	253, 636, 832, 923
TseFI	GTSAC	2 cut(s)	284, 837
TseI	GCWGC	4 cut(s)	164, 449, 878, 881
Tsp45I	GTSAC	2 cut(s)	284, 837
TspDTI	ATGAA	8 cut(s)	55, 106, 394, 479, 611, 743, 844, 966
TspGWI	ACGGA	3 cut(s)	272, 563, 910
TspRI	CASTG	4 cut(s)	253, 636, 832, 923
VpaK11BI	GGWCC	4 cut(s)	7, 478, 485, 969
XapI	RAATTY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	929
XspI	CTAG	2 cut(s)	558, 885
ZraI	GACGTC	2 cut(s)	259, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.