Prupe.6G171900_v2.0.a1

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
17698677 .. 17701291
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G171900.1

Sequence Viewer

Length: 1422 bp
ATGGCATACTTCAACCTCTCTTTCCTCGCCCTCCTCCTCCTCCTCCTGCCCCCACTCGCCCTCCTTCTCATCCTCTACCTCATAGTCCGGCCCCGCTCTGTCAAGATCCCAATCAAGAACCGCCACGTGTTCATCACCGGAGGTTCCAGCGGAATCGGGCTGGCATTGGCCCATCACGCGGCCTCCGAGGGTGCCCGAGTCTCCATCCTCGCCCGCTCCGTCGACAAGCTCGAGGAAGCAAAGAACAACATCCAACTCTCCACGGGCATTGACGTGTCGATCTTCTCTGCTGACGTTCGTGACTACGATGCAGTATCAAAAGCAGTGGAGGAGGCAGACCCCATTGATGTGCTGATTGTCAACCAAGGGGTCTTCGTCCCTGAAGAACTCGAGAAGCAGGGATTGGATGAGGTGAAGTTCATGGTGGACGTAAATCTGATTGGCAGCTTCAACATGATCAAAGCTGCTTTGCCCAAAATGAAGAAAGGAGACAGTGTACCCCGTTCGATTGCTCTCATGTCTTCCCAAGCTGGTCAAGTTGGTATCTACGGCTACACAGCTTACTCTGCGAGCAAGTTTGGGCTTCGTGGGTTGGCCGAAGCTCTGCAACAAGAGGTGATATCTCATGATATTCATGTTTCTCTTATATTCCCTCCGGACACAGACACCCCTGGTCTCACTGAAGAGACGAAAAAGCGGCCACAACTGACTAGCATTATAGCAGAGTCGTCAGGGGCGATGAAAGCTGAAGCAGTTGCGAAGAAGGCTTTTGACGGGATCAAGTCTGCTGCTTTTATTGTGCCTTGTAACCTTGAAGGGGCGTTGCTGTCTATTGCCACTGCTGGGATGTCTCCTCAGAGATCGTTTGTTATGGCATTTGTTGAAGTGGTTGCTGCTGGTTTGGTTCGTCTTGTTGCTCTGTTTTTCCAGTGGAATTGGTATAATGGTATACATATGTGGCATGCACAGAACGAAAAACTCAATTATTTTCGTTCCAACTTCGATTCTACTGCTTTATCGTTCTATTCTCTGTATTTTGGGTACATTTGGGTCGCTGGACAGCAGCTATTAGCCGCTGCCCTGCATCACTTGGTGCATTGTAAGGGCACTTCTTACACTGCAGCTGTTGGTTGCGGGATACTTTGGTTCTTCGAGTCACTGACCTTCACAGAAGGTGGTTTTGGCTATCGAATTCGCACCGAGCATCATTTAGCATTTGGTATTTGGTACTGCTTGAGGAAACTTGTTTTTTTACCTCCACCATTCTACCTTAAATTAAGACTGTTATCGTTCCAGGGCATTTGGTATGTTAAATCTTCATTGCTGACTCTGATGGATACCGGGAGTTGTGAAATTATTCTACGGATCAAACGCTTTGGAATTTCGGGTTTGTTTTTTAAAACCTATGTTCAAAAGAATTAA

Protein Analysis

474

Amino Acids

52.27

Weight (kDa)

8.86

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccBSI CCGCTC 2 cut(s) 96, 216
AccI GTMKAC 2 cut(s) 222, 949
AccII CGCG 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 8 cut(s) 94, 121, 150, 179, 214, 697, 1074, 1134
AclWI GGATC 3 cut(s) 100, 785, 1373
AcoI YGGCCR 2 cut(s) 594, 698
AcsI RAATTY 2 cut(s) 1191, 1380
AcuI CTGAAG 3 cut(s) 402, 702, 768
AcvI CACGTG 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 1093
AfaI GTAC 3 cut(s) 498, 1043, 1229
AfiI CCNNNNNNNGG 3 cut(s) 178, 817, 843
AflIII ACRYGT 2 cut(s) 126, 273
AgsI TTSAA 5 cut(s) 13, 451, 815, 884, 1412
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 2 cut(s) 670, 1293
AjuI GAANNNNNNNTTGG 4 cut(s) 386, 418, 1164, 1196
AluBI AGCT 9 cut(s) 229, 447, 464, 530, 560, 602, 746, 1066, 1124
AluI AGCT 9 cut(s) 229, 447, 464, 530, 560, 602, 746, 1066, 1124
Alw26I GTCTC 5 cut(s) 205, 483, 680, 680, 855
AlwI GGATC 3 cut(s) 100, 785, 1373
Ama87I CYCGRG 3 cut(s) 195, 230, 389
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 5 cut(s) 89, 168, 180, 594, 698
ApeKI GCWGC 7 cut(s) 444, 464, 788, 893, 1063, 1076, 1121
ApoI RAATTY 2 cut(s) 1191, 1380
Asp700I GAANNNNTTC 1 cut(s) 1356
AspS9I GGNCC 2 cut(s) 90, 169
AsuC2I CCSGG 1 cut(s) 1342
AsuHPI GGTGA 3 cut(s) 127, 424, 628
AvaI CYCGRG 3 cut(s) 195, 230, 389
BaeGI GKGCMC 2 cut(s) 196, 1109
BaeI ACNNNNGTAYC 2 cut(s) 1130, 1163
BanI GGYRCC 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 1093, 1125
BbrPI CACGTG 1 cut(s) 127
BbsI GAAGAC 2 cut(s) 364, 513
BbvI GCAGC 7 cut(s) 451, 456, 775, 880, 1063, 1075, 1133
BccI CCATC 3 cut(s) 180, 212, 1327
BceAI ACGGC 1 cut(s) 565
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 2 cut(s) 672, 1295
BciVI GTATCC 2 cut(s) 1131, 1330
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 1 cut(s) 1342
BcoDI GTCTC 5 cut(s) 205, 483, 680, 680, 855
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 1 cut(s) 1119
BfuI GTATCC 2 cut(s) 1131, 1330
Bme1390I CCNGG 3 cut(s) 672, 1295, 1342
BmeT110I CYCGRG 3 cut(s) 195, 230, 389
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 90, 169
BmiI GGNNCC 3 cut(s) 92, 145, 193
BmrFI CCNGG 3 cut(s) 672, 1295, 1342
BmsI GCATC 3 cut(s) 298, 1093, 1213
BpiI GAAGAC 2 cut(s) 364, 513
BpuEI CTTGAG 1 cut(s) 1255
BpuMI CCSGG 1 cut(s) 1342
BsaAI YACGTR 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 5 cut(s) 186, 261, 364, 670, 1294
BsaWI WCCGGW 2 cut(s) 137, 655
BsaXI ACNNNNNCTCC 6 cut(s) 45, 75, 167, 197, 480, 510
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 817, 843
Bse1I ACTGG 1 cut(s) 928
Bse3DI GCAATG 1 cut(s) 1319
Bse8I GATNNNNATC 1 cut(s) 110
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 2 cut(s) 672, 1295
BseDI CCNNGG 5 cut(s) 186, 261, 364, 670, 1294
BseGI GGATG 5 cut(s) 69, 204, 249, 412, 852
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 3 cut(s) 178, 817, 843
BseMI GCAATG 1 cut(s) 1319
BseMII CTCAG 1 cut(s) 869
BseNI ACTGG 1 cut(s) 928
BseRI GAGGAG 6 cut(s) 23, 26, 29, 32, 344, 843
BseSI GKGCMC 2 cut(s) 196, 1109
BseXI GCAGC 7 cut(s) 451, 456, 775, 880, 1063, 1075, 1133
BseYI CCCAGC 1 cut(s) 842
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 5 cut(s) 91, 170, 182, 596, 700
BshNI GGYRCC 1 cut(s) 191
BsiHKCI CYCGRG 3 cut(s) 195, 230, 389
BsiSI CCGG 4 cut(s) 88, 138, 656, 1341
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 3 cut(s) 178, 817, 843
BsmAI GTCTC 5 cut(s) 205, 483, 680, 680, 855
BsmBI CGTCTC 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 5 cut(s) 91, 170, 182, 596, 700
Bso31I GGTCTC 1 cut(s) 680
BsoBI CYCGRG 3 cut(s) 195, 230, 389
Bsp1286I GDGCHC 2 cut(s) 196, 1109
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 6 cut(s) 105, 279, 456, 777, 860, 1365
BspACI CCGC 8 cut(s) 94, 121, 150, 179, 214, 697, 1074, 1134
BspANI GGCC 5 cut(s) 91, 170, 182, 596, 700
BspCNI CTCAG 1 cut(s) 868
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 3 cut(s) 92, 145, 193
BspMAI CTGCAG 1 cut(s) 1123
BspPI GGATC 3 cut(s) 100, 785, 1373
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 680
BsrBI CCGCTC 2 cut(s) 96, 216
BsrDI GCAATG 1 cut(s) 1319
BsrI ACTGG 1 cut(s) 928
BssECI CCNNGG 5 cut(s) 186, 261, 364, 670, 1294
BssMI GATC 6 cut(s) 105, 279, 456, 777, 860, 1365
BssNAI GTATAC 1 cut(s) 950
BssT1I CCWWGG 1 cut(s) 364
Bst1107I GTATAC 1 cut(s) 950
Bst2UI CCWGG 2 cut(s) 672, 1295
Bst4CI ACNGT 2 cut(s) 494, 1284
Bst6I CTCTTC 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 4 cut(s) 162, 214, 571, 963
BstDEI CTNAG 1 cut(s) 855
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 5 cut(s) 69, 204, 249, 412, 852
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 6 cut(s) 108, 282, 459, 780, 863, 1368
BstMAI GTCTC 5 cut(s) 205, 483, 680, 680, 855
BstMBI GATC 6 cut(s) 105, 279, 456, 777, 860, 1365
BstMWI GCNNNNNNNGC 4 cut(s) 176, 566, 743, 764
BstNI CCWGG 2 cut(s) 672, 1295
BstNSI RCATGY 1 cut(s) 965
BstSCI CCNGG 3 cut(s) 670, 1293, 1340
BstSFI CTRYAG 1 cut(s) 1119
BstSLI GKGCMC 2 cut(s) 196, 1109
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 7 cut(s) 451, 456, 775, 880, 1063, 1075, 1133
BstV2I GAAGAC 2 cut(s) 364, 513
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BstZ17I GTATAC 1 cut(s) 950
BsuI GTATCC 2 cut(s) 1131, 1330
BsuRI GGCC 5 cut(s) 91, 170, 182, 596, 700
BtgI CCRYGG 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 752
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 5 cut(s) 69, 204, 249, 412, 852
BtsI GCAGTG 3 cut(s) 330, 837, 1116
BtsIMutI CAGTG 7 cut(s) 330, 499, 678, 837, 935, 1116, 1157
Cac8I GCNNGC 4 cut(s) 162, 214, 571, 963
CciI TCATGA 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 90, 169
Csp6I GTAC 3 cut(s) 497, 1042, 1228
CspCI CAANNNNNGTGG 4 cut(s) 250, 285, 306, 341
CviAII CATG 6 cut(s) 421, 454, 517, 626, 635, 962
CviQI GTAC 3 cut(s) 497, 1042, 1228
DdeI CTNAG 1 cut(s) 855
DpnI GATC 6 cut(s) 107, 281, 458, 779, 862, 1367
DpnII GATC 6 cut(s) 105, 279, 456, 777, 860, 1365
DraI TTTAAA 1 cut(s) 1399
DraIII CACNNNGTG 1 cut(s) 1093
EaeI YGGCCR 2 cut(s) 594, 698
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 680
Eco32I GATATC 1 cut(s) 621
Eco57I CTGAAG 3 cut(s) 402, 702, 768
Eco72I CACGTG 1 cut(s) 127
Eco88I CYCGRG 3 cut(s) 195, 230, 389
EcoRI GAATTC 1 cut(s) 1191
EcoRII CCWGG 2 cut(s) 670, 1293
EcoRV GATATC 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 680
FaeI CATG 6 cut(s) 424, 457, 520, 629, 638, 965
FaqI GGGAC 1 cut(s) 362
FatI CATG 6 cut(s) 420, 453, 516, 625, 634, 961
FauI CCCGC 3 cut(s) 101, 221, 1127
FauNDI CATATG 1 cut(s) 954
FbaI TGATCA 1 cut(s) 456
FblI GTMKAC 2 cut(s) 222, 949
FokI GGATG 5 cut(s) 56, 191, 236, 419, 859
FspBI CTAG 1 cut(s) 711
GsaI CCCAGC 1 cut(s) 846
HaeIII GGCC 5 cut(s) 91, 170, 182, 596, 700
HapII CCGG 4 cut(s) 88, 138, 656, 1341
Hin1II CATG 6 cut(s) 424, 457, 520, 629, 638, 965
HincII GTYRAC 2 cut(s) 223, 361
HindII GTYRAC 2 cut(s) 223, 361
HinfI GANTC 6 cut(s) 153, 198, 725, 1004, 1154, 1327
HpaII CCGG 4 cut(s) 88, 138, 656, 1341
HphI GGTGA 3 cut(s) 127, 424, 628
Hpy166II GTNNAC 5 cut(s) 223, 361, 427, 497, 950
Hpy188I TCNGA 4 cut(s) 187, 438, 858, 1332
Hpy188III TCNNGA 6 cut(s) 103, 115, 299, 391, 626, 656
Hpy8I GTNNAC 5 cut(s) 223, 361, 427, 497, 950
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 5 cut(s) 74, 757, 809, 1166, 1174
HpyCH4III ACNGT 2 cut(s) 494, 1284
HpyCH4IV ACGT 4 cut(s) 126, 273, 294, 429
HpyCH4V TGCA 6 cut(s) 311, 607, 965, 1084, 1096, 1121
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 566, 743, 764
HpyF3I CTNAG 1 cut(s) 855
HpySE526I ACGT 4 cut(s) 126, 273, 294, 429
Hsp92II CATG 6 cut(s) 424, 457, 520, 629, 638, 965
Kpn2I TCCGGA 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 6 cut(s) 105, 279, 456, 777, 860, 1365
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 7 cut(s) 451, 456, 775, 880, 1063, 1075, 1133
LweI GCATC 3 cut(s) 298, 1093, 1213
MaeI CTAG 1 cut(s) 711
MaeII ACGT 4 cut(s) 126, 273, 294, 429
MaeIII GTNAC 3 cut(s) 299, 806, 1155
MalI GATC 6 cut(s) 107, 281, 458, 779, 862, 1367
MbiI CCGCTC 2 cut(s) 96, 216
MboI GATC 6 cut(s) 105, 279, 456, 777, 860, 1365
MboII GAAGA 9 cut(s) 274, 364, 395, 493, 513, 695, 772, 1141, 1308
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 2 cut(s) 196, 1109
MluCI AATT 7 cut(s) 934, 982, 1191, 1274, 1353, 1380, 1417
MlyI GAGTC 4 cut(s) 207, 734, 1163, 1321
MmeI TCCRAC 2 cut(s) 277, 1020
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 1356
MseI TTAA 5 cut(s) 1272, 1277, 1311, 1398, 1420
MslI CAYNNNNRTG 2 cut(s) 272, 347
MspA1I CMGCKG 3 cut(s) 150, 1076, 1124
MspI CCGG 4 cut(s) 88, 138, 656, 1341
MspR9I CCNGG 3 cut(s) 672, 1295, 1342
MvaI CCWGG 2 cut(s) 672, 1295
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 176, 566, 743, 764
NciI CCSGG 1 cut(s) 1342
NdeI CATATG 1 cut(s) 954
NdeII GATC 6 cut(s) 105, 279, 456, 777, 860, 1365
NlaIII CATG 6 cut(s) 424, 457, 520, 629, 638, 965
NlaIV GGNNCC 3 cut(s) 92, 145, 193
NmuCI GTSAC 2 cut(s) 299, 1155
NspI RCATGY 1 cut(s) 965
PaeI GCATGC 1 cut(s) 965
PaeR7I CTCGAG 2 cut(s) 230, 389
PagI TCATGA 1 cut(s) 625
PcsI WCGNNNNNNNCGW 4 cut(s) 183, 216, 228, 734
PdmI GAANNNNTTC 1 cut(s) 1356
PfeI GAWTC 2 cut(s) 153, 1004
PleI GAGTC 4 cut(s) 206, 733, 1162, 1321
PmaCI CACGTG 1 cut(s) 127
PmlI CACGTG 1 cut(s) 127
PpsI GAGTC 4 cut(s) 206, 733, 1162, 1321
Ppu21I YACGTR 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 670, 1293
PspCI CACGTG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 2 cut(s) 670, 1293
PspN4I GGNNCC 3 cut(s) 92, 145, 193
PspPI GGNCC 2 cut(s) 90, 169
PspXI VCTCGAGB 1 cut(s) 230
PstI CTGCAG 1 cut(s) 1123
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 3 cut(s) 498, 1043, 1229
RsaNI GTAC 3 cut(s) 497, 1042, 1228
RseI CAYNNNNRTG 2 cut(s) 272, 347
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 5 cut(s) 1272, 1277, 1311, 1398, 1420
Sau3AI GATC 6 cut(s) 105, 279, 456, 777, 860, 1365
Sau96I GGNCC 2 cut(s) 90, 169
SchI GAGTC 4 cut(s) 207, 734, 1163, 1321
ScrFI CCNGG 3 cut(s) 672, 1295, 1342
SduI GDGCHC 2 cut(s) 196, 1109
SfaNI GCATC 3 cut(s) 298, 1093, 1213
SfcI CTRYAG 1 cut(s) 1119
Sfr274I CTCGAG 2 cut(s) 230, 389
SlaI CTCGAG 2 cut(s) 230, 389
SmiMI CAYNNNNRTG 2 cut(s) 272, 347
SmlI CTYRAG 3 cut(s) 230, 389, 1234
SmoI CTYRAG 3 cut(s) 230, 389, 1234
SphI GCATGC 1 cut(s) 965
Sse9I AATT 7 cut(s) 934, 982, 1191, 1274, 1353, 1380, 1417
SsiI CCGC 8 cut(s) 94, 121, 150, 179, 214, 697, 1074, 1134
SspMI CTAG 1 cut(s) 711
StyD4I CCNGG 3 cut(s) 670, 1293, 1340
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 2 cut(s) 494, 1284
TaiI ACGT 4 cut(s) 129, 276, 297, 432
TaqI TCGA 8 cut(s) 222, 231, 278, 390, 506, 1002, 1152, 1189
TasI AATT 7 cut(s) 934, 982, 1191, 1274, 1353, 1380, 1417
TauI GCSGC 3 cut(s) 182, 700, 1076
TfiI GAWTC 2 cut(s) 153, 1004
Tru1I TTAA 5 cut(s) 1272, 1277, 1311, 1398, 1420
Tru9I TTAA 5 cut(s) 1272, 1277, 1311, 1398, 1420
TscAI CASTG 7 cut(s) 330, 499, 685, 844, 935, 1123, 1164
TseFI GTSAC 2 cut(s) 299, 1155
TseI GCWGC 7 cut(s) 444, 464, 788, 893, 1063, 1076, 1121
Tsp45I GTSAC 2 cut(s) 299, 1155
TspDTI ATGAA 6 cut(s) 121, 409, 494, 623, 755, 1308
TspGWI ACGGA 2 cut(s) 208, 1378
TspRI CASTG 7 cut(s) 330, 499, 685, 844, 935, 1123, 1164
XapI RAATTY 2 cut(s) 1191, 1380
XceI RCATGY 1 cut(s) 965
XhoI CTCGAG 2 cut(s) 230, 389
XmiI GTMKAC 2 cut(s) 222, 949
XmnI GAANNNNTTC 1 cut(s) 1356
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.