Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

26042639 .. 26043061

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0148200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGATGGAACTGTTTCTTTTTTCGACACAGATCGCGGCAAGTTCCTGCACCACCTGGAAGGCCACTGCATGCCCGTGAGGTCTCTTGTGTTTTCCCCTGTTGAACCGCGGTTACTCTTCACTGGCTCGGACGATCAACATGTGCACATGTATGATGCTGAGGGGAAAACCCAGGTTGGGTCCATGTCAGGGCATAACGGCTGGGTCTTGAGTGTCGATGCAAGCACAGATGGGGCAGCCCTTGCAACTGGTTCAAGTGATAGAACTGTGAAGCTGTGGGATATTGGCATGAAGGCAGCTGTGCAGACAATGAGCAACCATAATGACCAAGTCTGGGGAGTGGCCTTTCGACCTGGAGGAATGCCTGGCAGACTTGCTAGTGTCTCTGATGACAAGAGCATATCACTGTATGACTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

140

Amino Acids

15.19

Weight (kDa)

5.49

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	1 - 73	1.4e-08	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	1 - 138	4.1e-17	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	2 - 138	1.3e-26	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	2 - 120	2.2e-08	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	2 - 65	7.8e-08	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	2 - 120	2.2e-09	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	2 - 138	9.1e-19	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	2 - 139	1.9e-27	WDR5 beta-propeller domain
WDR55	PF24796	2 - 118	5.5e-11	WDR55
Beta-prop_EML_2	PF23414	2 - 112	4.6e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	3 - 105	3.8e-12	WDHD1 first WD40 domain
WD40	PF00400	13 - 52	2.3e-06	WD domain, G-beta repeat
EIF3I	PF24805	19 - 118	2e-12	EIF3I
Beta-prop_IFT122_1st	PF23381	26 - 130	2.6e-06	IFT122 first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	26 - 136	1e-07	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	27 - 139	1.2e-17	Prp19 WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	28 - 120	3.5e-06	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	39 - 139	3.1e-12	G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1	PF24105	57 - 139	1.8e-07	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	57 - 94	1.1e-09	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	61 - 139	1e-07	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	65 - 139	1e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	74 - 139	3.4e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	36, 109
AciI	CCGC	3 cut(s)	36, 107, 109
AfiI	CCNNNNNNNGG	3 cut(s)	177, 189, 334
AflIII	ACRYGT	2 cut(s)	139, 147
AgsI	TTSAA	2 cut(s)	104, 255
AjnI	CCWGG	4 cut(s)	54, 171, 352, 364
AluBI	AGCT	2 cut(s)	274, 299
AluI	AGCT	2 cut(s)	274, 299
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	87, 388
Alw44I	GTGCAC	1 cut(s)	143
AoxI	GGCC	2 cut(s)	61, 342
ApaLI	GTGCAC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	236, 296
Asp700I	GAANNNNTTC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	248, 308
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	4 cut(s)	56, 173, 354, 366
BcoDI	GTCTC	2 cut(s)	87, 388
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	3 cut(s)	37, 237, 297
BlsI	GCNGC	3 cut(s)	38, 238, 298
Bme1390I	CCNGG	4 cut(s)	56, 173, 354, 366
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	4 cut(s)	56, 173, 354, 366
BmsI	GCATC	2 cut(s)	145, 208
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	107, 171
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 189, 334
Bse1I	ACTGG	2 cut(s)	127, 253
BseBI	CCWGG	4 cut(s)	56, 173, 354, 366
BseDI	CCNNGG	2 cut(s)	107, 171
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	177, 189, 334
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	127, 253
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	248, 308
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	2 cut(s)	32, 323
Bsh1236I	CGCG	2 cut(s)	36, 109
BshFI	GGCC	2 cut(s)	63, 344
BsiHKAI	GWGCWC	1 cut(s)	147
BslI	CCNNNNNNNGG	3 cut(s)	177, 189, 334
BsmAI	GTCTC	2 cut(s)	87, 388
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	63, 344
Bso31I	GGTCTC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	31, 133
BspACI	CCGC	3 cut(s)	36, 107, 109
BspANI	GGCC	2 cut(s)	63, 344
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	36, 109
BspLI	GGNNCC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	127, 253
BssECI	CCNNGG	2 cut(s)	107, 171
BssMI	GATC	2 cut(s)	31, 133
Bst2UI	CCWGG	4 cut(s)	56, 173, 354, 366
Bst4CI	ACNGT	3 cut(s)	13, 268, 408
Bst6I	CTCTTC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	71, 223
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	36, 109
BstKTI	GATC	2 cut(s)	34, 136
BstMAI	GTCTC	2 cut(s)	87, 388
BstMBI	GATC	2 cut(s)	31, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	4 cut(s)	56, 173, 354, 366
BstNSI	RCATGY	3 cut(s)	73, 143, 151
BstSCI	CCNGG	4 cut(s)	54, 171, 352, 364
BstSLI	GKGCMC	1 cut(s)	147
BstUI	CGCG	2 cut(s)	36, 109
BstV1I	GCAGC	2 cut(s)	248, 308
BsuRI	GGCC	2 cut(s)	63, 344
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 120, 404
Cac8I	GCNNGC	2 cut(s)	71, 223
Cfr13I	GGNCC	1 cut(s)	180
Cfr42I	CCGCGG	1 cut(s)	110
CviAII	CATG	5 cut(s)	70, 140, 148, 184, 289
CviJI	RGCY	7 cut(s)	63, 126, 201, 239, 274, 299, 344
CviKI_1	RGCY	7 cut(s)	63, 126, 201, 239, 274, 299, 344
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	33, 135
DpnII	GATC	2 cut(s)	31, 133
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	180
EcoRII	CCWGG	4 cut(s)	54, 171, 352, 364
FaeI	CATG	5 cut(s)	73, 143, 151, 187, 292
FatI	CATG	5 cut(s)	69, 139, 147, 183, 288
Fnu4HI	GCNGC	3 cut(s)	37, 237, 297
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	37, 237, 297
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	3 cut(s)	37, 237, 297
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	63, 344
Hin1II	CATG	5 cut(s)	73, 143, 151, 187, 292
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	130, 388
Hpy188III	TCNNGA	2 cut(s)	208, 420
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	53, 286
HpyCH4III	ACNGT	3 cut(s)	13, 268, 408
HpyCH4V	TGCA	6 cut(s)	49, 69, 145, 221, 245, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	5 cut(s)	73, 143, 151, 187, 292
KspI	CCGCGG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	31, 133
Lsp1109I	GCAGC	2 cut(s)	248, 308
LweI	GCATC	2 cut(s)	145, 208
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	2 cut(s)	33, 135
MboI	GATC	2 cut(s)	31, 133
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	72, 154, 350
MroXI	GAANNNNTTC	1 cut(s)	13
MslI	CAYNNNNRTG	2 cut(s)	74, 150
MspA1I	CMGCKG	2 cut(s)	109, 299
MspR9I	CCNGG	4 cut(s)	56, 173, 354, 366
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	4 cut(s)	56, 173, 354, 366
MvnI	CGCG	2 cut(s)	36, 109
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	2 cut(s)	31, 133
NlaIII	CATG	5 cut(s)	73, 143, 151, 187, 292
NlaIV	GGNNCC	1 cut(s)	181
NspI	RCATGY	3 cut(s)	73, 143, 151
PaeI	GCATGC	1 cut(s)	73
PciI	ACATGT	2 cut(s)	139, 147
PctI	GAATGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	38, 238, 298
PscI	ACATGT	2 cut(s)	139, 147
Psp6I	CCWGG	4 cut(s)	54, 171, 352, 364
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	4 cut(s)	54, 171, 352, 364
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	180
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PsyI	GACNNNGTC	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	299
RseI	CAYNNNNRTG	2 cut(s)	74, 150
SacII	CCGCGG	1 cut(s)	110
SatI	GCNGC	3 cut(s)	37, 237, 297
Sau3AI	GATC	2 cut(s)	31, 133
Sau96I	GGNCC	1 cut(s)	180
ScrFI	CCNGG	4 cut(s)	56, 173, 354, 366
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	57, 83, 177, 276, 301, 355
SfaNI	GCATC	2 cut(s)	145, 208
Sfr303I	CCGCGG	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	2 cut(s)	74, 150
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SphI	GCATGC	1 cut(s)	73
SsiI	CCGC	3 cut(s)	36, 107, 109
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	4 cut(s)	54, 171, 352, 364
TaaI	ACNGT	3 cut(s)	13, 268, 408
TaqI	TCGA	3 cut(s)	24, 216, 349
TauI	GCSGC	1 cut(s)	39
TscAI	CASTG	3 cut(s)	71, 127, 411
TseI	GCWGC	2 cut(s)	236, 296
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	3 cut(s)	71, 127, 411
Tth111I	GACNNNGTC	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	180
XceI	RCATGY	3 cut(s)	73, 143, 151
XmnI	GAANNNNTTC	1 cut(s)	13
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.