Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

33277271 .. 33280607

Gene Structure 3337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGAACCCCAACTTCCCCTTCCTCCTCCTCCCTCTCGCTCTCTTCCTCCTCCTCCTCTTCTTCATTGTCTGCCCCCACCCCACCACCATCCCAATCACGAACCGCCACGTCTTCATAACCGGTTGTTCCAGCGGCATCGGCCTTACCCTGGCCCACCGCGCCTCCTCCGAGGGCTCCAAAGTCTCCATCCTCGGGCGCTCTTTCGACAAGCTCGAGGAGTCCAAGAACTACATCCAGCTCTCCACATGCATCAATGTCACCGTCTTCGCCGCCGACGTACGTGACTATGAAGCAGTTTCGAAGGGAGTGTTTGTGACCGAGGAGTTGGAGAAGCACGGATTAGATGAGGTCAGGTTCATGGTGGATGTCAATTTGATGGGTAGCTTCAACATGATCAATGCTACTTTGCCGAGAATGAAAGACAGGATGGACCGTGGACCGGGTTCAATTGCTTTGATGTCATCTCAGGTTGGTCAGATTGTAGACAACATTCACATTTCGCTGATTTTCCCTCCAACTACTGACACTCCTGGACTCACTAAAGATGTGCACTCAATTGCAGAAGCTAAGAAGAGGCCGCAATTGACCAGAATTATCACGAAATCCTCTAGTGTAATGAAAGCTGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCTTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGGAGAGATCATTCAGTATGAAAGTGTGTGCAAATTTGTATCATTCGTGATGGCATTTGTGGAGGTGGTTGCTGCTGGTATAATATGTATTGTTGCTTTGGGATGTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGTTTTGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

293

Amino Acids

32.27

Weight (kDa)

7.07

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	37 - 104	9.3e-09	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	486, 833, 841
AccII	CGCG	1 cut(s)	162
AciI	CCGC	5 cut(s)	106, 135, 160, 273, 581
AcsI	RAATTY	1 cut(s)	746
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	151, 195, 442
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	391, 450, 695
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	150, 532
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 632, 664
AluBI	AGCT	6 cut(s)	214, 241, 387, 569, 626, 647
AluI	AGCT	6 cut(s)	214, 241, 387, 569, 626, 647
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	190
Alw44I	GTGCAC	1 cut(s)	551
Ama87I	CYCGRG	2 cut(s)	194, 215
AoxI	GGCC	3 cut(s)	142, 153, 578
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	1 cut(s)	746
AsiGI	ACCGGT	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	164, 201
AspS9I	GGNCC	3 cut(s)	154, 433, 440
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	302
AvaI	CYCGRG	2 cut(s)	194, 215
AvaII	GGWCC	2 cut(s)	433, 440
BaeGI	GKGCMC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	106, 259
Bbv12I	GWGCWC	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	6 cut(s)	98, 197, 373, 424, 647, 757
BciT130I	CCWGG	2 cut(s)	152, 534
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	202
BisI	GCNGC	4 cut(s)	136, 273, 581, 786
BlsI	GCNGC	4 cut(s)	137, 274, 582, 787
Bme1390I	CCNGG	3 cut(s)	152, 444, 534
Bme18I	GGWCC	2 cut(s)	433, 440
BmeT110I	CYCGRG	2 cut(s)	194, 215
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	154, 433, 440
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	3 cut(s)	152, 444, 534
BmsI	GCATC	3 cut(s)	147, 261, 865
BpiI	GAAGAC	2 cut(s)	106, 259
Bpu10I	CCTNAGC	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	284
BsaJI	CCNNGG	5 cut(s)	150, 171, 193, 321, 436
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	6 cut(s)	149, 179, 300, 330, 514, 544
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 195, 442
Bse118I	RCCGGY	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	152, 534
BseDI	CCNNGG	5 cut(s)	150, 171, 193, 321, 436
BseGI	GGATG	7 cut(s)	90, 189, 234, 373, 435, 658, 821
BseLI	CCNNNNNNNGG	3 cut(s)	151, 195, 442
BseMII	CTCAG	2 cut(s)	482, 618
BseRI	GAGGAG	8 cut(s)	17, 20, 41, 44, 47, 157, 233, 338
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	772
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	144, 155, 580
BshTI	ACCGGT	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	2 cut(s)	194, 215
BsiSI	CCGG	2 cut(s)	123, 443
BsiWI	CGTACG	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	151, 195, 442
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	144, 155, 580
BsoBI	CYCGRG	2 cut(s)	194, 215
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	179, 555
Bsp143I	GATC	2 cut(s)	396, 720
BspACI	CCGC	5 cut(s)	106, 135, 160, 273, 581
BspANI	GGCC	3 cut(s)	144, 155, 580
BspCNI	CTCAG	2 cut(s)	481, 619
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	150, 171, 193, 321, 436
BssMI	GATC	2 cut(s)	396, 720
BssNAI	GTATAC	2 cut(s)	834, 842
Bst1107I	GTATAC	2 cut(s)	834, 842
Bst2UI	CCWGG	2 cut(s)	152, 534
Bst4CI	ACNGT	2 cut(s)	265, 437
Bst6I	CTCTTC	3 cut(s)	50, 65, 569
BstBAI	YACGTR	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	468, 570, 627
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	7 cut(s)	90, 189, 234, 373, 435, 658, 821
BstFNI	CGCG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	164, 201
BstKTI	GATC	2 cut(s)	399, 723
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	396, 720
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 161, 644
BstNI	CCWGG	2 cut(s)	152, 534
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	3 cut(s)	150, 442, 532
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	2 cut(s)	106, 259
BstZ17I	GTATAC	2 cut(s)	834, 842
BsuRI	GGCC	3 cut(s)	144, 155, 580
BtgI	CCRYGG	1 cut(s)	436
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	7 cut(s)	90, 189, 234, 373, 435, 658, 821
BtsIMutI	CAGTG	1 cut(s)	827
CfoI	GCGC	2 cut(s)	164, 201
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	154, 433, 440
Csp6I	GTAC	1 cut(s)	281
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	4 cut(s)	249, 361, 394, 854
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	3 cut(s)	468, 570, 627
DpnI	GATC	2 cut(s)	398, 722
DpnII	GATC	2 cut(s)	396, 720
Eam1104I	CTCTTC	3 cut(s)	50, 65, 569
EarI	CTCTTC	3 cut(s)	50, 65, 569
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	433, 440
Eco88I	CYCGRG	2 cut(s)	194, 215
EcoRII	CCWGG	2 cut(s)	150, 532
EcoT22I	ATGCAT	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	4 cut(s)	252, 364, 397, 857
FatI	CATG	4 cut(s)	248, 360, 393, 853
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	3 cut(s)	486, 833, 841
Fnu4HI	GCNGC	4 cut(s)	136, 273, 581, 786
FokI	GGATG	7 cut(s)	77, 176, 221, 380, 442, 665, 828
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	4 cut(s)	136, 273, 581, 786
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	2 cut(s)	163, 200
GluI	GCNGC	4 cut(s)	136, 273, 581, 786
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	3 cut(s)	144, 155, 580
HapII	CCGG	2 cut(s)	123, 443
HhaI	GCGC	2 cut(s)	164, 201
Hin1II	CATG	4 cut(s)	252, 364, 397, 857
Hin6I	GCGC	2 cut(s)	162, 199
HinP1I	GCGC	2 cut(s)	162, 199
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	3 cut(s)	221, 537, 657
HpaII	CCGG	2 cut(s)	123, 443
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	5 cut(s)	440, 487, 553, 834, 842
Hpy188I	TCNGA	2 cut(s)	172, 480
Hpy188III	TCNNGA	3 cut(s)	100, 601, 760
Hpy8I	GTNNAC	5 cut(s)	440, 487, 553, 834, 842
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	31, 298, 689
HpyCH4III	ACNGT	2 cut(s)	265, 437
HpyCH4IV	ACGT	3 cut(s)	111, 279, 283
HpyCH4V	TGCA	5 cut(s)	252, 553, 563, 687, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 161, 644
HpyF3I	CTNAG	3 cut(s)	468, 570, 627
HpySE526I	ACGT	3 cut(s)	111, 279, 283
Hsp92II	CATG	4 cut(s)	252, 364, 397, 857
HspAI	GCGC	2 cut(s)	162, 199
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	396, 720
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	3 cut(s)	147, 261, 865
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	3 cut(s)	111, 279, 283
MaeIII	GTNAC	3 cut(s)	259, 284, 316
MalI	GATC	2 cut(s)	398, 722
MboI	GATC	2 cut(s)	396, 720
MboII	GAAGA	7 cut(s)	37, 52, 55, 106, 259, 586, 652
MfeI	CAATTG	3 cut(s)	450, 558, 584
MhlI	GDGCHC	2 cut(s)	179, 555
MluCI	AATT	7 cut(s)	373, 450, 558, 584, 594, 746, 826
MlyI	GAGTC	2 cut(s)	230, 531
MmeI	TCCRAC	2 cut(s)	309, 542
Mph1103I	ATGCAT	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	2 cut(s)	123, 443
MspR9I	CCNGG	3 cut(s)	152, 444, 534
MunI	CAATTG	3 cut(s)	450, 558, 584
MvaI	CCWGG	2 cut(s)	152, 534
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	141, 161, 644
NciI	CCSGG	1 cut(s)	444
NdeII	GATC	2 cut(s)	396, 720
NlaIII	CATG	4 cut(s)	252, 364, 397, 857
NlaIV	GGNNCC	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	3 cut(s)	259, 284, 316
NsiI	ATGCAT	1 cut(s)	254
NspI	RCATGY	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 276
PfeI	GAWTC	1 cut(s)	657
Pfl23II	CGTACG	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	532
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	137, 274, 582, 787
PleI	GAGTC	2 cut(s)	229, 531
PpsI	GAGTC	2 cut(s)	229, 531
Ppu21I	YACGTR	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	150, 532
PspGI	CCWGG	2 cut(s)	150, 532
PspLI	CGTACG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	154, 433, 440
PspXI	VCTCGAGB	1 cut(s)	215
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SatI	GCNGC	4 cut(s)	136, 273, 581, 786
Sau3AI	GATC	2 cut(s)	396, 720
Sau96I	GGNCC	3 cut(s)	154, 433, 440
SchI	GAGTC	2 cut(s)	230, 531
ScrFI	CCNGG	3 cut(s)	152, 444, 534
SduI	GDGCHC	2 cut(s)	179, 555
SfaNI	GCATC	3 cut(s)	147, 261, 865
Sfr274I	CTCGAG	1 cut(s)	215
SfuI	TTCGAA	1 cut(s)	302
SinI	GGWCC	2 cut(s)	433, 440
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	7 cut(s)	373, 450, 558, 584, 594, 746, 826
SsiI	CCGC	5 cut(s)	106, 135, 160, 273, 581
SspMI	CTAG	1 cut(s)	612
StyD4I	CCNGG	3 cut(s)	150, 442, 532
TaaI	ACNGT	2 cut(s)	265, 437
TaiI	ACGT	3 cut(s)	114, 282, 286
TaqI	TCGA	3 cut(s)	207, 216, 302
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	7 cut(s)	373, 450, 558, 584, 594, 746, 826
TauI	GCSGC	3 cut(s)	138, 275, 583
TfiI	GAWTC	1 cut(s)	657
TscAI	CASTG	1 cut(s)	827
TseFI	GTSAC	3 cut(s)	259, 284, 316
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	3 cut(s)	259, 284, 316
TspDTI	ATGAA	7 cut(s)	55, 106, 306, 349, 434, 635, 747
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	827
VneI	GTGCAC	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	433, 440
XapI	RAATTY	1 cut(s)	746
XceI	RCATGY	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	215
XmiI	GTMKAC	3 cut(s)	486, 833, 841
XspI	CTAG	1 cut(s)	612
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.