Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

31943763 .. 31944804

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG180700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGGACCCCATCTTCTCCTTCCTCCTCCTCCTCCTCTACTTCATTGTCCACCCCTACCCCACCACTGTCCCAATCGAGAACAGCCACATCTTCATCTCCGGTGGTTTTAGCGGCATCGGCCTTTCCCTGGCCCACCGTGCTGCCTCTGAGGGCGCTAAAGTATCCATCCATGCGCGCTCTCTTGACAAGCTCGAGGAGGCCAAGAAGTACATCCAGCTCTCCACAGACATCGACGTCACTGTCTTCGCCTCCGACGTGCGTGACTACGAAGCAGTTTCAACGGCTGTCGTGGCGGTGGGCCCGATCGACATGTTGGTCCTCAACCAGGGAGTGTTTATGGCCGAGGAGTTAGAAAAGCAAGGATTGGATAAGGTCAGGTTCATGGTGGACGTCAATTTGATGGGTAGCTTCAACATGATCAAAGCTGCTTTGCCTGGAATGAAAGACAGGAAGGAACGTGGACCGGAAACTAAGAAGTGGCCGCAGCTGACCAACATTGTCGTGGAATCTTCTGGTTCAATGAAAGCTACGGAAGTTGTGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCTTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGCTGGGTTGTCACCTCAGAGATCGTTTGTGATGGCATTTATGGAGGTGGTTGCTGCTGGTATAATACGTATTTCTGCTCTGAGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

237

Amino Acids

25.78

Weight (kDa)

6.11

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	30 - 152	1.1e-21	short chain dehydrogenase
KR	PF08659	31 - 143	5.3e-06	KR domain
adh_short_C2	PF13561	38 - 150	7.7e-13	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	236, 242, 317
AatII	GACGTC	2 cut(s)	240, 396
AccII	CGCG	1 cut(s)	178
AciI	CCGC	3 cut(s)	114, 296, 485
AcoI	YGGCCR	2 cut(s)	342, 482
AcyI	GRCGYC	2 cut(s)	237, 393
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	130, 328, 627
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	282, 415, 522, 599
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	3 cut(s)	129, 327, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	7 cut(s)	193, 220, 411, 428, 490, 530, 551
AluI	AGCT	7 cut(s)	193, 220, 411, 428, 490, 530, 551
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	6 cut(s)	121, 132, 201, 301, 342, 482
ApaI	GGGCCC	1 cut(s)	305
ApeKI	GCWGC	4 cut(s)	143, 428, 487, 677
AspLEI	GCGC	3 cut(s)	158, 178, 180
AspS9I	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
AsuHPI	GGTGA	1 cut(s)	627
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	3 cut(s)	7, 319, 464
BaeGI	GKGCMC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	130, 415, 499, 664
BccI	CCATC	5 cut(s)	20, 176, 397, 551, 649
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	3 cut(s)	131, 329, 438
BciVI	GTATCC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	6 cut(s)	115, 144, 429, 485, 488, 678
BlsI	GCNGC	6 cut(s)	116, 145, 430, 486, 489, 679
Bme1390I	CCNGG	3 cut(s)	131, 329, 438
Bme18I	GGWCC	3 cut(s)	7, 319, 464
BmeT110I	CYCGRG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
BmiI	GGNNCC	2 cut(s)	9, 303
BmrFI	CCNGG	3 cut(s)	131, 329, 438
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	692
BsaHI	GRCGYC	2 cut(s)	237, 393
BsaJI	CCNNGG	3 cut(s)	129, 328, 345
BsaWI	WCCGGW	2 cut(s)	101, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 328, 627
BseBI	CCWGG	3 cut(s)	131, 329, 438
BseDI	CCNNGG	3 cut(s)	129, 328, 345
BseGI	GGATG	3 cut(s)	168, 213, 562
BseLI	CCNNNNNNNGG	3 cut(s)	130, 328, 627
BseMII	CTCAG	3 cut(s)	141, 653, 695
BsePI	GCGCGC	1 cut(s)	176
BseRI	GAGGAG	6 cut(s)	17, 20, 23, 26, 212, 362
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	4 cut(s)	130, 415, 499, 664
BseYI	CCCAGC	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	178
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
BsiEI	CGRYCG	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	102, 467
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	130, 328, 627
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
BsoBI	CYCGRG	1 cut(s)	194
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	306, 420, 644, 707
BspACI	CCGC	3 cut(s)	114, 296, 485
BspANI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
BspCNI	CTCAG	3 cut(s)	142, 652, 696
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	9, 303
BssECI	CCNNGG	3 cut(s)	129, 328, 345
BssHII	GCGCGC	1 cut(s)	176
BssMI	GATC	4 cut(s)	306, 420, 644, 707
BssNI	GRCGYC	2 cut(s)	237, 393
Bst2UI	CCWGG	3 cut(s)	131, 329, 438
Bst4CI	ACNGT	3 cut(s)	70, 140, 244
BstACI	GRCGYC	2 cut(s)	237, 393
BstBAI	YACGTR	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	5 cut(s)	150, 474, 639, 704, 711
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	168, 213, 562
BstFNI	CGCG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	158, 178, 180
BstKTI	GATC	4 cut(s)	309, 423, 647, 710
BstMBI	GATC	4 cut(s)	306, 420, 644, 707
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 140, 293
BstNI	CCWGG	3 cut(s)	131, 329, 438
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	129, 327, 436
BstSLI	GKGCMC	1 cut(s)	305
BstSNI	TACGTA	1 cut(s)	692
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	4 cut(s)	130, 415, 499, 664
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	168, 213, 562
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	3 cut(s)	66, 240, 621
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	3 cut(s)	158, 178, 180
Cfr13I	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	4 cut(s)	173, 313, 385, 418
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	5 cut(s)	150, 474, 639, 704, 711
DpnI	GATC	4 cut(s)	308, 422, 646, 709
DpnII	GATC	4 cut(s)	306, 420, 644, 707
DrdI	GACNNNNNNGTC	3 cut(s)	236, 242, 317
DseDI	GACNNNNNNGTC	3 cut(s)	236, 242, 317
EaeI	YGGCCR	2 cut(s)	342, 482
Eco105I	TACGTA	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	3 cut(s)	7, 319, 464
Eco88I	CYCGRG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	3 cut(s)	129, 327, 436
EcoT38I	GRGCYC	1 cut(s)	305
FaeI	CATG	4 cut(s)	176, 316, 388, 421
FaiI	YATR	7 cut(s)	174, 314, 341, 386, 419, 665, 686
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	4 cut(s)	172, 312, 384, 417
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	6 cut(s)	115, 144, 429, 485, 488, 678
FokI	GGATG	3 cut(s)	155, 200, 569
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	6 cut(s)	115, 144, 429, 485, 488, 678
GlaI	GCGC	3 cut(s)	157, 177, 179
GluI	GCNGC	6 cut(s)	115, 144, 429, 485, 488, 678
GsaI	CCCAGC	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
HapII	CCGG	2 cut(s)	102, 467
HhaI	GCGC	3 cut(s)	158, 178, 180
Hin1I	GRCGYC	2 cut(s)	237, 393
Hin1II	CATG	4 cut(s)	176, 316, 388, 421
Hin6I	GCGC	3 cut(s)	156, 176, 178
HinP1I	GCGC	3 cut(s)	156, 176, 178
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	2 cut(s)	509, 561
HpaII	CCGG	2 cut(s)	102, 467
HphI	GGTGA	1 cut(s)	627
Hpy166II	GTNNAC	3 cut(s)	52, 391, 464
Hpy188I	TCNGA	4 cut(s)	151, 256, 642, 705
Hpy188III	TCNNGA	2 cut(s)	79, 185
Hpy8I	GTNNAC	3 cut(s)	52, 391, 464
Hpy99I	CGWCG	2 cut(s)	239, 260
HpyAV	CCTTC	3 cut(s)	31, 448, 593
HpyCH4III	ACNGT	3 cut(s)	70, 140, 244
HpyCH4IV	ACGT	5 cut(s)	237, 258, 393, 460, 691
HpyCH4V	TGCA	1 cut(s)	591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 140, 293
HpyF3I	CTNAG	5 cut(s)	150, 474, 639, 704, 711
HpySE526I	ACGT	5 cut(s)	237, 258, 393, 460, 691
Hsp92I	GRCGYC	2 cut(s)	237, 393
Hsp92II	CATG	4 cut(s)	176, 316, 388, 421
HspAI	GCGC	3 cut(s)	156, 176, 178
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	306, 420, 644, 707
Lsp1109I	GCAGC	4 cut(s)	130, 415, 499, 664
LweI	GCATC	1 cut(s)	126
MaeII	ACGT	5 cut(s)	237, 258, 393, 460, 691
MaeIII	GTNAC	3 cut(s)	238, 263, 633
MalI	GATC	4 cut(s)	308, 422, 646, 709
MboI	GATC	4 cut(s)	306, 420, 644, 707
MboII	GAAGA	5 cut(s)	7, 85, 238, 504, 556
MflI	RGATCY	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	2 cut(s)	102, 467
MspR9I	CCNGG	3 cut(s)	131, 329, 438
MvaI	CCWGG	3 cut(s)	131, 329, 438
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	120, 140, 293
NdeII	GATC	4 cut(s)	306, 420, 644, 707
NlaIII	CATG	4 cut(s)	176, 316, 388, 421
NlaIV	GGNNCC	2 cut(s)	9, 303
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	3 cut(s)	238, 263, 633
NspI	RCATGY	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	194
PauI	GCGCGC	1 cut(s)	176
PciI	ACATGT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	509, 561
PkrI	GCNGC	6 cut(s)	116, 145, 430, 486, 489, 679
Ple19I	CGATCG	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	692
PpuMI	RGGWCCY	1 cut(s)	7
PscI	ACATGT	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	3 cut(s)	129, 327, 436
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	3 cut(s)	129, 327, 436
PspN4I	GGNNCC	2 cut(s)	9, 303
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
PspPPI	RGGWCCY	1 cut(s)	7
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	707
PteI	GCGCGC	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	503
SatI	GCNGC	6 cut(s)	115, 144, 429, 485, 488, 678
Sau3AI	GATC	4 cut(s)	306, 420, 644, 707
Sau96I	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
ScrFI	CCNGG	3 cut(s)	131, 329, 438
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	7, 319, 464
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SnaBI	TACGTA	1 cut(s)	692
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	3 cut(s)	114, 296, 485
StyD4I	CCNGG	3 cut(s)	129, 327, 436
TaaI	ACNGT	3 cut(s)	70, 140, 244
TaiI	ACGT	5 cut(s)	240, 261, 396, 463, 694
TaqI	TCGA	4 cut(s)	78, 195, 234, 309
TasI	AATT	1 cut(s)	397
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	2 cut(s)	117, 487
TfiI	GAWTC	2 cut(s)	509, 561
TscAI	CASTG	3 cut(s)	73, 247, 628
TseFI	GTSAC	3 cut(s)	238, 263, 633
TseI	GCWGC	4 cut(s)	143, 428, 487, 677
Tsp45I	GTSAC	3 cut(s)	238, 263, 633
TspDTI	ATGAA	5 cut(s)	34, 85, 373, 458, 539
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	3 cut(s)	73, 247, 628
VpaK11BI	GGWCC	3 cut(s)	7, 319, 464
XagI	CCTNNNNNAGG	1 cut(s)	326
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XhoI	CTCGAG	1 cut(s)	194
ZraI	GACGTC	2 cut(s)	238, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.