Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8391473.1

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1213

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8391473.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 464 bp

atgaaggacaggaaggaccgcggaccgggttcgattgctctgatgtcgtcgcaggccggtcaggttgggatttatggctacacggcttattcagctagcaaatttgggcttcggggtttggcggaagctctgcagcaagaggttattgcagatgacattcacgtttcgctgattttccctccagatactgacactcctggactcactgaagaaactaagaagaggccgcagctgaccagcattattgcggaatcatctggtgcaatgaaagccgaggaagttgcgaagaaagctttggatggaatcaagtctgcttcctttattgtgccttgcaactttgaagggcttttgttgtccattgccactgccgggttgtcgcctcagagatcattcgtcatggcatttgtggaggtggttgctgctggtgtaatacggatagctgctctgggatttcagtggaattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

154

Amino Acids

16.32

Weight (kDa)

5.83

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	5 cut(s)	19, 21, 122, 227, 248
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	25, 369
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	5 cut(s)	95, 128, 232, 293, 440
AluI	AGCT	5 cut(s)	95, 128, 232, 293, 440
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	54, 224
ApeKI	GCWGC	4 cut(s)	133, 229, 419, 440
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	16, 23
AsuC2I	CCSGG	2 cut(s)	27, 370
AsuNHI	GCTAGC	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	16, 23
BbvI	GCAGC	4 cut(s)	145, 241, 406, 427
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	198
BcnI	CCSGG	2 cut(s)	27, 370
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	131
BisI	GCNGC	5 cut(s)	134, 227, 230, 420, 441
BlsI	GCNGC	5 cut(s)	135, 228, 231, 421, 442
Bme1390I	CCNGG	3 cut(s)	27, 198, 370
Bme18I	GGWCC	2 cut(s)	16, 23
BmgT120I	GGNCC	2 cut(s)	16, 23
BmrFI	CCNGG	3 cut(s)	27, 198, 370
BmtI	GCTAGC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	165
BpuMI	CCSGG	2 cut(s)	27, 370
BsaJI	CCNNGG	2 cut(s)	19, 273
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 369
Bse118I	RCCGGY	1 cut(s)	56
Bse3DI	GCAATG	2 cut(s)	270, 357
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	19, 273
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	25, 369
BseMI	GCAATG	2 cut(s)	270, 357
BseMII	CTCAG	1 cut(s)	395
BseXI	GCAGC	4 cut(s)	145, 241, 406, 427
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	56, 226
BsiSI	CCGG	3 cut(s)	26, 57, 369
BslI	CCNNNNNNNGG	2 cut(s)	25, 369
BsnI	GGCC	2 cut(s)	56, 226
Bsp143I	GATC	1 cut(s)	386
BspACI	CCGC	5 cut(s)	19, 21, 122, 227, 248
BspANI	GGCC	2 cut(s)	56, 226
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	135
BspOI	GCTAGC	1 cut(s)	99
BsrDI	GCAATG	2 cut(s)	270, 357
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	19, 273
BssMI	GATC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	54, 97
BstDEI	CTNAG	2 cut(s)	216, 381
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 269, 290
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	3 cut(s)	25, 196, 368
BstSFI	CTRYAG	1 cut(s)	131
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	4 cut(s)	145, 241, 406, 427
BsuRI	GGCC	2 cut(s)	56, 226
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	204, 363, 461
Cac8I	GCNNGC	2 cut(s)	54, 97
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	16, 23
Cfr42I	CCGCGG	1 cut(s)	22
CpoI	CGGWCCG	1 cut(s)	23
CspI	CGGWCCG	1 cut(s)	23
CviAII	CATG	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	216, 381
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	16, 23
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	196
FaeI	CATG	1 cut(s)	400
FaiI	YATR	2 cut(s)	75, 398
FatI	CATG	1 cut(s)	396
Fnu4HI	GCNGC	5 cut(s)	134, 227, 230, 420, 441
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	5 cut(s)	134, 227, 230, 420, 441
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	5 cut(s)	134, 227, 230, 420, 441
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	56, 226
HapII	CCGG	3 cut(s)	26, 57, 369
Hin1II	CATG	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	201, 251, 303
HpaII	CCGG	3 cut(s)	26, 57, 369
Hpy188I	TCNGA	2 cut(s)	42, 384
Hpy188III	TCNNGA	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	7, 335
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	4 cut(s)	133, 149, 263, 333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 269, 290
HpyF3I	CTNAG	2 cut(s)	216, 381
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	400
KspI	CCGCGG	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	386
Lsp1109I	GCAGC	4 cut(s)	145, 241, 406, 427
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	162
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	3 cut(s)	221, 232, 298
MluCI	AATT	2 cut(s)	101, 460
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	133, 189, 216, 268, 390, 403
MspA1I	CMGCKG	2 cut(s)	21, 232
MspI	CCGG	3 cut(s)	26, 57, 369
MspR9I	CCNGG	3 cut(s)	27, 198, 370
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	92, 269, 290
NciI	CCSGG	2 cut(s)	27, 370
NdeII	GATC	1 cut(s)	386
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	251, 303
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	135, 228, 231, 421, 442
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspPI	GGNCC	2 cut(s)	16, 23
PstI	CTGCAG	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	232
Rsr2I	CGGWCCG	1 cut(s)	23
RsrII	CGGWCCG	1 cut(s)	23
SacII	CCGCGG	1 cut(s)	22
SatI	GCNGC	5 cut(s)	134, 227, 230, 420, 441
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	2 cut(s)	16, 23
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	3 cut(s)	27, 198, 370
SetI	ASST	9 cut(s)	66, 97, 130, 144, 165, 234, 295, 414, 442
SfcI	CTRYAG	1 cut(s)	131
Sfr303I	CCGCGG	1 cut(s)	22
SgrBI	CCGCGG	1 cut(s)	22
SinI	GGWCC	2 cut(s)	16, 23
Sse9I	AATT	2 cut(s)	101, 460
SsiI	CCGC	5 cut(s)	19, 21, 122, 227, 248
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	25, 196, 368
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	101, 460
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	251, 303
TscAI	CASTG	3 cut(s)	211, 370, 461
TseI	GCWGC	4 cut(s)	133, 229, 419, 440
TspDTI	ATGAA	2 cut(s)	17, 281
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	3 cut(s)	211, 370, 461
VpaK11BI	GGWCC	2 cut(s)	16, 23
XapI	RAATTY	1 cut(s)	101
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.