Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

38668946 .. 38692370

Gene Structure 23425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGCGCAGTGGAATATGTAATGACCACTTCGCCCCTCCGTCGAAAGTCTTGAAGATATGGTTACTCTCTTTCTGCAAATGGTCCGCATATGTGGTTGACGGGAAGGTTAAAGTTCTAAATGTTGAGGAAGCCCCATCAGACTTCAAGAGTTCAAGGTCTCTGGTGGAAGAAACCTTGGCTGGTGGAACTCGTGGGAACAACAACGATGGAGTCATAAAAAAAGCATTTAAGACATTTGACCAAGCAATGAAGAAGGGAAATAAAGGAGAAAGATGTTTTCAGCTGGAGAATAAAGGAGAAAGACAAATCGAATCAAATTCCATCTCACATAGTAGTTCACTTGAACCACTAAAGAATTTAGTGAGATTCATGTACTGTGCCACTGCTGAATTCTATATTGGTTTTGGTGATCTTATTTATTTTCATCGTTATTTTGGCCTCTACATGACAACGATTTCTGGAATTAAGTTTCAGCTGCTTAGAGAAGCTGGCACTTCCATTTTGGAGATACCGAAACTTGATGTTATCTCATTTTTGGACATTCCAATACAGAACCGCCATGTCTTCATCACCGGCGGTTCCGGTGGCATTGGCCTAGCCCCGGCCCATCTCGCCGCCTGCGAGGGTGCCAAAGTCTCCATCCTTGCGCTACCCGACGACAAGCTCGAGGAGGCCAAGAACTACATCCAACTCTCCACCGGCATCGACATCATCGTCTTCGCCGCCGATGTCCGTGACTACGACGCAGTTTCTAAGGTTGTCGAGGTGGCGGGCCCGATCGATGTGTTGATCGTCAACCGGGGAGTTTTTGTGGCTAGGGAGTTGGAGAAGCGAGGGATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

282

Amino Acids

31.02

Weight (kDa)

7.62

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	188 - 270	2.4e-13	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	629
AccII	CGCG	1 cut(s)	7
AciI	CCGC	6 cut(s)	87, 559, 579, 618, 726, 773
AcsI	RAATTY	3 cut(s)	319, 358, 392
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	604
AgsI	TTSAA	4 cut(s)	55, 148, 156, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	4 cut(s)	286, 478, 491, 667
AluI	AGCT	4 cut(s)	286, 478, 491, 667
Alw26I	GTCTC	2 cut(s)	165, 643
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	5 cut(s)	439, 595, 606, 675, 775
ApaI	GGGCCC	1 cut(s)	779
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	3 cut(s)	319, 358, 392
AspLEI	GCGC	3 cut(s)	7, 9, 652
AspS9I	GGNCC	4 cut(s)	84, 607, 775, 776
AsuC2I	CCSGG	2 cut(s)	605, 803
AsuHPI	GGTGA	2 cut(s)	422, 565
AvaI	CYCGRG	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	779
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	2 cut(s)	559, 712
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	5 cut(s)	145, 203, 332, 618, 650
BcnI	CCSGG	2 cut(s)	605, 803
BcoDI	GTCTC	2 cut(s)	165, 643
BfaI	CTAG	2 cut(s)	599, 819
BisI	GCNGC	3 cut(s)	479, 618, 726
BlsI	GCNGC	3 cut(s)	480, 619, 727
Bme1390I	CCNGG	2 cut(s)	605, 803
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	4 cut(s)	84, 607, 775, 776
BmiI	GGNNCC	3 cut(s)	583, 631, 777
BmrFI	CCNGG	2 cut(s)	605, 803
BmsI	GCATC	1 cut(s)	714
BpiI	GAAGAC	2 cut(s)	559, 712
BpmI	CTGGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	605, 803
Bsa29I	ATCGAT	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	177, 603, 802
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	798, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	2 cut(s)	575, 701
Bse3DI	GCAATG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	3 cut(s)	177, 603, 802
BseGI	GGATG	2 cut(s)	642, 687
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	255
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	686
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	783
BshFI	GGCC	5 cut(s)	441, 597, 608, 677, 777
BshNI	GGYRCC	1 cut(s)	629
BshVI	ATCGAT	1 cut(s)	783
BsiEI	CGRYCG	1 cut(s)	783
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	5 cut(s)	576, 585, 605, 702, 802
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	2 cut(s)	165, 643
BsnI	GGCC	5 cut(s)	441, 597, 608, 677, 777
Bso31I	GGTCTC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	668
Bsp120I	GGGCCC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp143I	GATC	3 cut(s)	412, 780, 792
BspACI	CCGC	6 cut(s)	87, 559, 579, 618, 726, 773
BspANI	GGCC	5 cut(s)	441, 597, 608, 677, 777
BspDI	ATCGAT	1 cut(s)	783
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	583, 631, 777
BspT107I	GGYRCC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	575, 701
BssAI	RCCGGY	2 cut(s)	575, 701
BssECI	CCNNGG	3 cut(s)	177, 603, 802
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	3 cut(s)	412, 780, 792
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	380
BstC8I	GCNNGC	4 cut(s)	7, 493, 622, 775
BstDEI	CTNAG	2 cut(s)	482, 756
BstF5I	GGATG	2 cut(s)	642, 687
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	3 cut(s)	7, 9, 652
BstKTI	GATC	3 cut(s)	415, 783, 795
BstMAI	GTCTC	2 cut(s)	165, 643
BstMBI	GATC	3 cut(s)	412, 780, 792
BstMCI	CGRYCG	1 cut(s)	783
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	603, 801
BstSLI	GKGCMC	1 cut(s)	779
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	465
BstV2I	GAAGAC	2 cut(s)	559, 712
Bsu15I	ATCGAT	1 cut(s)	783
BsuRI	GGCC	5 cut(s)	441, 597, 608, 677, 777
BsuTUI	ATCGAT	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	642, 687
BtsI	GCAGTG	2 cut(s)	16, 384
BtsIMutI	CAGTG	2 cut(s)	16, 384
Cac8I	GCNNGC	4 cut(s)	7, 493, 622, 775
CfoI	GCGC	3 cut(s)	7, 9, 652
Cfr10I	RCCGGY	2 cut(s)	575, 701
Cfr13I	GGNCC	4 cut(s)	84, 607, 775, 776
ClaI	ATCGAT	1 cut(s)	783
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	3 cut(s)	373, 448, 563
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	482, 756
DpnI	GATC	3 cut(s)	414, 782, 794
DpnII	GATC	3 cut(s)	412, 780, 792
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	779
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	376, 451, 566
FatI	CATG	3 cut(s)	372, 447, 562
FauI	CCCGC	1 cut(s)	766
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	479, 618, 726
FokI	GGATG	2 cut(s)	629, 674
FriOI	GRGCYC	1 cut(s)	779
Fsp4HI	GCNGC	3 cut(s)	479, 618, 726
FspBI	CTAG	2 cut(s)	599, 819
GlaI	GCGC	3 cut(s)	6, 8, 651
GluI	GCNGC	3 cut(s)	479, 618, 726
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	5 cut(s)	441, 597, 608, 677, 777
HapII	CCGG	5 cut(s)	576, 585, 605, 702, 802
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	3 cut(s)	7, 9, 652
Hin1II	CATG	3 cut(s)	376, 451, 566
Hin6I	GCGC	3 cut(s)	5, 7, 650
HinP1I	GCGC	3 cut(s)	5, 7, 650
HincII	GTYRAC	2 cut(s)	100, 799
HindII	GTYRAC	2 cut(s)	100, 799
HinfI	GANTC	3 cut(s)	213, 314, 369
HpaII	CCGG	5 cut(s)	576, 585, 605, 702, 802
HphI	GGTGA	2 cut(s)	422, 565
Hpy166II	GTNNAC	3 cut(s)	100, 341, 799
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	52, 148, 462
Hpy8I	GTNNAC	3 cut(s)	100, 341, 799
Hpy99I	CGWCG	3 cut(s)	46, 662, 749
HpyAV	CCTTC	2 cut(s)	100, 250
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	2 cut(s)	482, 756
Hsp92II	CATG	3 cut(s)	376, 451, 566
HspAI	GCGC	3 cut(s)	5, 7, 650
Kzo9I	GATC	3 cut(s)	412, 780, 792
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	1 cut(s)	714
MaeI	CTAG	2 cut(s)	599, 819
MaeIII	GTNAC	2 cut(s)	63, 737
MalI	GATC	3 cut(s)	414, 782, 794
MboI	GATC	3 cut(s)	412, 780, 792
MboII	GAAGA	5 cut(s)	67, 182, 265, 559, 712
MhlI	GDGCHC	1 cut(s)	779
MluCI	AATT	4 cut(s)	319, 358, 392, 465
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	715, 807
MnlI	CCTC	8 cut(s)	48, 121, 452, 619, 664, 667, 760, 830
MseI	TTAA	3 cut(s)	111, 231, 468
MspA1I	CMGCKG	2 cut(s)	286, 478
MspI	CCGG	5 cut(s)	576, 585, 605, 702, 802
MspR9I	CCNGG	2 cut(s)	605, 803
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	614
NciI	CCSGG	2 cut(s)	605, 803
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	412, 780, 792
NlaIII	CATG	3 cut(s)	376, 451, 566
NlaIV	GGNNCC	3 cut(s)	583, 631, 777
NmuCI	GTSAC	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	668
PauI	GCGCGC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	3 cut(s)	621, 666, 714
PfeI	GAWTC	2 cut(s)	314, 369
PkrI	GCNGC	3 cut(s)	480, 619, 727
Ple19I	CGATCG	1 cut(s)	783
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	583, 631, 777
PspOMI	GGGCCC	1 cut(s)	775
PspPI	GGNCC	4 cut(s)	84, 607, 775, 776
PspXI	VCTCGAGB	1 cut(s)	668
PteI	GCGCGC	1 cut(s)	5
PvuI	CGATCG	1 cut(s)	783
PvuII	CAGCTG	2 cut(s)	286, 478
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	3 cut(s)	111, 231, 468
SatI	GCNGC	3 cut(s)	479, 618, 726
Sau3AI	GATC	3 cut(s)	412, 780, 792
Sau96I	GGNCC	4 cut(s)	84, 607, 775, 776
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	605, 803
SduI	GDGCHC	1 cut(s)	779
SetI	ASST	9 cut(s)	111, 161, 179, 288, 480, 493, 669, 762, 771
SfaNI	GCATC	1 cut(s)	714
Sfr274I	CTCGAG	1 cut(s)	668
SgrAI	CRCCGGYG	1 cut(s)	575
SinI	GGWCC	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	4 cut(s)	319, 358, 392, 465
SsiI	CCGC	6 cut(s)	87, 559, 579, 618, 726, 773
SspMI	CTAG	2 cut(s)	599, 819
StyD4I	CCNGG	2 cut(s)	603, 801
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	6 cut(s)	44, 312, 669, 708, 765, 783
TasI	AATT	4 cut(s)	319, 358, 392, 465
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	2 cut(s)	620, 728
TfiI	GAWTC	2 cut(s)	314, 369
Tru1I	TTAA	3 cut(s)	111, 231, 468
Tru9I	TTAA	3 cut(s)	111, 231, 468
TscAI	CASTG	2 cut(s)	16, 391
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	4 cut(s)	266, 361, 416, 559
TspGWI	ACGGA	2 cut(s)	30, 725
TspRI	CASTG	2 cut(s)	16, 391
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	3 cut(s)	319, 358, 392
XhoI	CTCGAG	1 cut(s)	668
XspI	CTAG	2 cut(s)	599, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.