Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8170416.1

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 672

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8170416.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 338 bp

aaagccacgtcttcatcaccagcggtttcggcctcgccctagcccaccgcgccacctccaagggctccaaagtctccatcctcgtgcactctcttgacaagctcgaggaggccaagaactacatccagctctccatcggcatccacatcgccatcttcactggcgacattcgtgactacgacgcagttttgaaggctgttaaggcggcgggcccgatcgatgtgttggtcgttaaccagggagtgtttgtggccaaggagttggagaagcaggtattggatgaggtcaggttcatggtggacgtcaatctgatcggtagcttcaacatgataaaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

112

Amino Acids

12.17

Weight (kDa)

6.88

Isoelectric Point (pI)

14.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	261
AccII	CGCG	1 cut(s)	50
AciI	CCGC	4 cut(s)	23, 48, 205, 208
AcoI	YGGCCR	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	192, 324
AjiI	CACGTC	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	259, 291
AluBI	AGCT	4 cut(s)	102, 129, 320, 337
AluI	AGCT	4 cut(s)	102, 129, 320, 337
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	78
Alw44I	GTGCAC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	4 cut(s)	30, 110, 210, 251
ApaI	GGGCCC	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	210, 211
AsuHPI	GGTGA	1 cut(s)	9
AvaI	CYCGRG	1 cut(s)	103
BaeGI	GKGCMC	2 cut(s)	89, 214
BalI	TGGCCA	1 cut(s)	253
BanII	GRGCYC	2 cut(s)	67, 214
BauI	CACGAG	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	1 cut(s)	89
BccI	CCATC	3 cut(s)	85, 142, 160
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	210, 211
BmiI	GGNNCC	2 cut(s)	66, 212
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	3
Bsa29I	ATCGAT	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	59, 237, 254
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	59, 237, 254
BseGI	GGATG	4 cut(s)	77, 122, 140, 285
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	2 cut(s)	89, 214
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	218
BshFI	GGCC	4 cut(s)	32, 112, 212, 253
BshVI	ATCGAT	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	4 cut(s)	32, 112, 212, 253
BsoBI	CYCGRG	1 cut(s)	103
Bsp120I	GGGCCC	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	67, 89, 214
Bsp143I	GATC	2 cut(s)	215, 311
BspACI	CCGC	4 cut(s)	23, 48, 205, 208
BspANI	GGCC	4 cut(s)	32, 112, 212, 253
BspDI	ATCGAT	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	66, 212
BspMI	ACCTGC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	3 cut(s)	59, 237, 254
BssMI	GATC	2 cut(s)	215, 311
BssNI	GRCGYC	1 cut(s)	302
BssSI	CACGAG	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	59, 254
Bst2BI	CACGAG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	210
BstF5I	GGATG	4 cut(s)	77, 122, 140, 285
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	218, 314
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	215, 311
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 49, 202
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstSLI	GKGCMC	2 cut(s)	89, 214
BstUI	CGCG	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	3
BstXI	CCANNNNNNTGG	1 cut(s)	261
Bsu15I	ATCGAT	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	32, 112, 212, 253
BsuTUI	ATCGAT	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	77, 122, 140, 285
BtsIMutI	CAGTG	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	210, 211
ClaI	ATCGAT	1 cut(s)	218
CseI	GACGC	1 cut(s)	190
CviAII	CATG	2 cut(s)	294, 327
DpnI	GATC	2 cut(s)	217, 313
DpnII	GATC	2 cut(s)	215, 311
EaeI	YGGCCR	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	59, 254
Eco24I	GRGCYC	2 cut(s)	67, 214
Eco88I	CYCGRG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	59, 254
EcoT38I	GRGCYC	2 cut(s)	67, 214
ErhI	CCWWGG	2 cut(s)	59, 254
FaeI	CATG	2 cut(s)	297, 330
FaiI	YATR	2 cut(s)	295, 328
FatI	CATG	2 cut(s)	293, 326
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	4 cut(s)	64, 109, 127, 292
FriOI	GRGCYC	2 cut(s)	67, 214
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	40
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	4 cut(s)	32, 112, 212, 253
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	297, 330
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HpaI	GTTAAC	1 cut(s)	234
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	3 cut(s)	87, 234, 300
Hpy188I	TCNGA	1 cut(s)	311
Hpy188III	TCNNGA	2 cut(s)	94, 172
Hpy8I	GTNNAC	3 cut(s)	87, 234, 300
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	186
HpyCH4IV	ACGT	2 cut(s)	8, 302
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 49, 202
HpySE526I	ACGT	2 cut(s)	8, 302
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	297, 330
HspAI	GCGC	1 cut(s)	50
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	215, 311
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	33, 139, 146, 223, 250, 256, 273
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	40
MaeII	ACGT	2 cut(s)	8, 302
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	217, 313
MboI	GATC	2 cut(s)	215, 311
MboII	GAAGA	2 cut(s)	3, 147
MhlI	GDGCHC	3 cut(s)	67, 89, 214
MlsI	TGGCCA	1 cut(s)	253
MluNI	TGGCCA	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	43, 66, 91, 99, 102, 276
Mox20I	TGGCCA	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	253
MseI	TTAA	2 cut(s)	200, 233
MslI	CAYNNNNRTG	1 cut(s)	82
Msp20I	TGGCCA	1 cut(s)	253
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	29, 49, 202
NdeII	GATC	2 cut(s)	215, 311
NlaIII	CATG	2 cut(s)	297, 330
NlaIV	GGNNCC	2 cut(s)	66, 212
NmuCI	GTSAC	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	207
Ple19I	CGATCG	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	66, 212
PspOMI	GGGCCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	210, 211
PspXI	VCTCGAGB	1 cut(s)	103
PvuI	CGATCG	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	200, 233
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	215, 311
Sau96I	GGNCC	2 cut(s)	210, 211
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	3 cut(s)	67, 89, 214
SetI	ASST	9 cut(s)	11, 58, 104, 131, 275, 287, 292, 305, 322
SfaNI	GCATC	1 cut(s)	149
Sfr274I	CTCGAG	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SsiI	CCGC	4 cut(s)	23, 48, 205, 208
SspMI	CTAG	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	2 cut(s)	59, 254
TaiI	ACGT	2 cut(s)	11, 305
TaqI	TCGA	2 cut(s)	104, 218
TauI	GCSGC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	200, 233
Tru9I	TTAA	2 cut(s)	200, 233
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	165
VneI	GTGCAC	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	103
XspI	CTAG	1 cut(s)	40
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.