Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

22708758 .. 22709625

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAAAGGCTGCAGCTGACCAGCATTATTGTGGAAACTAAGAAGAGGCCGCAGCTGACCAGCATTATTGCGGAATCATTTGGAGCAATGAAAGCCGAGGAAGTTGTGAAGAAAGCTTTGGATGGAATCAAGTTTGCTTCCTTTATTGTTCCGTGCAACTTTGAAGGGCTTTTGTTGTCCATTGCCACTGTCGGGTTTTCGCCTCAGAGATCATTCGTCATGGCATTTGTGGAGGTGGTTGCTGCTGGTGTAATACGGTTAGCTACTTTGGGATTTCAGTGGAATTGCTCGTCGCTGTTGACGTCCTCCAATTCCTGGATTCTCGCCGGCCTAGCCTCCTTCCTCTGCATAGACTTTGGGACTTCTGGGTTATGCTTCTTCTCTGCAGATAGAATCAAACGGAACCCAATTTCTCTGATTCCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

143

Amino Acids

15.41

Weight (kDa)

9.3

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	315
AciI	CCGC	2 cut(s)	50, 71
AcyI	GRCGYC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	192, 315
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	314
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	4 cut(s)	16, 55, 116, 263
AluI	AGCT	4 cut(s)	16, 55, 116, 263
AoxI	GGCC	2 cut(s)	47, 328
ApeKI	GCWGC	4 cut(s)	10, 13, 52, 242
BbvI	GCAGC	3 cut(s)	25, 64, 229
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	11, 384
BisI	GCNGC	5 cut(s)	11, 14, 50, 53, 243
BlsI	GCNGC	5 cut(s)	12, 15, 51, 54, 244
Bme1390I	CCNGG	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 315
Bse118I	RCCGGY	1 cut(s)	326
Bse3DI	GCAATG	2 cut(s)	93, 180
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	192, 315
BseMI	GCAATG	2 cut(s)	93, 180
BseMII	CTCAG	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	25, 64, 229
BshFI	GGCC	2 cut(s)	49, 330
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	192, 315
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	49, 330
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	2 cut(s)	50, 71
BspANI	GGCC	2 cut(s)	49, 330
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	404
BspMAI	CTGCAG	2 cut(s)	15, 388
BsrDI	GCAATG	2 cut(s)	93, 180
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	209
BssNI	GRCGYC	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	190, 258
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	39, 204
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 332
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	2 cut(s)	11, 384
BstV1I	GCAGC	3 cut(s)	25, 64, 229
BsuRI	GGCC	2 cut(s)	49, 330
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	186, 284
Cac8I	GCNNGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	326
CviAII	CATG	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	39, 204
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	223
FaiI	YATR	4 cut(s)	221, 350, 373, 427
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	5 cut(s)	11, 14, 50, 53, 243
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	5 cut(s)	11, 14, 50, 53, 243
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	5 cut(s)	11, 14, 50, 53, 243
HaeIII	GGCC	2 cut(s)	49, 330
HapII	CCGG	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	5 cut(s)	74, 126, 319, 393, 418
HpaII	CCGG	1 cut(s)	327
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	207, 417
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	158, 349
HpyCH4III	ACNGT	2 cut(s)	190, 258
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	13, 156, 348, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 332
HpyF3I	CTNAG	2 cut(s)	39, 204
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	7 cut(s)	34, 73, 231, 301, 328, 340, 351
Lsp1109I	GCAGC	3 cut(s)	25, 64, 229
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	302
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	3 cut(s)	55, 121, 370
MluCI	AATT	3 cut(s)	283, 310, 408
MnlI	CCTC	7 cut(s)	39, 91, 213, 226, 316, 346, 353
MroNI	GCCGGC	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	16, 55
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	92, 332
NaeI	GCCGGC	1 cut(s)	328
NdeII	GATC	1 cut(s)	209
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	404
NmeAIII	GCCGAG	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	5 cut(s)	74, 126, 319, 393, 418
PflMI	CCANNNNNTGG	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	5 cut(s)	12, 15, 51, 54, 244
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	404
PstI	CTGCAG	2 cut(s)	15, 388
PvuII	CAGCTG	2 cut(s)	16, 55
RseI	CAYNNNNRTG	1 cut(s)	29
SatI	GCNGC	5 cut(s)	11, 14, 50, 53, 243
Sau3AI	GATC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	316
SetI	ASST	6 cut(s)	18, 57, 118, 237, 265, 305
SfcI	CTRYAG	2 cut(s)	11, 384
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	3 cut(s)	283, 310, 408
SsiI	CCGC	2 cut(s)	50, 71
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	190, 258
TaiI	ACGT	1 cut(s)	305
TasI	AATT	3 cut(s)	283, 310, 408
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	5 cut(s)	74, 126, 319, 393, 418
TscAI	CASTG	2 cut(s)	193, 284
TseI	GCWGC	4 cut(s)	10, 13, 52, 242
TspDTI	ATGAA	2 cut(s)	17, 104
TspGWI	ACGGA	2 cut(s)	141, 415
TspRI	CASTG	2 cut(s)	193, 284
Van91I	CCANNNNNTGG	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.