Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

26068360 .. 26069050

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0148400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGTTGTCAACTAGCAGCGGTGTGTCGGTTTTGGTACTTGTATTCATCATCTTCATGAGTAGTGCCACTACAGACTTGGTGATGGTCGCAGCAGGTCGAGTACCGGAGCTTGCACACCAGGCAGCTGAGGCAGATACGACATGCAATCCGGTGCAGTTGAGTCCATGTTTAGATCCAATCCAGCATGGTTCGAAGCCGTCGAGTACCTGTTGCCAGAAGCTCAAGGAGCAGATTCCAATCATTCCATGCCTCTGTGGATACATCAAGAACCCAGCCTTCAAGCAATATGTCACCGGTCCCAACGCCGAAAAACTCTCTTCCAACTGTGGTGTTCCCTACCCTCGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

117

Amino Acids

12.46

Weight (kDa)

8.13

Isoelectric Point (pI)

25.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	38 - 113	4.3e-10	Probable lipid transfer
Tryp_alpha_amyl	PF00234	50 - 117	2.2e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	170
AfaI	GTAC	3 cut(s)	39, 105, 208
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	3 cut(s)	112, 128, 223
AluI	AGCT	3 cut(s)	112, 128, 223
AlwI	GGATC	1 cut(s)	170
ApeKI	GCWGC	3 cut(s)	18, 92, 125
AsiGI	ACCGGT	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	94, 286
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	299
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	30, 104, 137
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	3 cut(s)	19, 93, 126
BlsI	GCNGC	3 cut(s)	20, 94, 127
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	239
BsaWI	WCCGGW	3 cut(s)	106, 151, 296
Bse118I	RCCGGY	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	122
BseJI	GATNNNNATC	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	30, 104, 137
BseYI	CCCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	107, 152, 297
BslFI	GGGAC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	325
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	129
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 229
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	30, 104, 137
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	3 cut(s)	38, 104, 207
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	5 cut(s)	58, 144, 168, 188, 249
CviJI	RGCY	5 cut(s)	112, 128, 199, 223, 278
CviKI_1	RGCY	5 cut(s)	112, 128, 199, 223, 278
CviQI	GTAC	3 cut(s)	38, 104, 207
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	5 cut(s)	61, 147, 171, 191, 252
FaiI	YATR	6 cut(s)	59, 145, 169, 189, 250, 291
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	5 cut(s)	57, 143, 167, 187, 248
Fnu4HI	GCNGC	3 cut(s)	19, 93, 126
Fsp4HI	GCNGC	3 cut(s)	19, 93, 126
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	3 cut(s)	19, 93, 126
GsaI	CCCAGC	1 cut(s)	278
HapII	CCGG	3 cut(s)	107, 152, 297
Hin1II	CATG	5 cut(s)	61, 147, 171, 191, 252
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	2 cut(s)	163, 235
HpaII	CCGG	3 cut(s)	107, 152, 297
HphI	GGTGA	2 cut(s)	94, 286
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	58, 268
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	116, 147, 157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 229
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	61, 147, 171, 191, 252
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	109, 229
Lsp1109I	GCAGC	3 cut(s)	30, 104, 137
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	46, 312
MflI	RGATCY	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	124, 263, 354
MseI	TTAA	1 cut(s)	352
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	21, 128
MspI	CCGG	3 cut(s)	107, 152, 297
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 229
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	5 cut(s)	61, 147, 171, 191, 252
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	194
PagI	TCATGA	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	235
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	20, 94, 127
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	3 cut(s)	39, 105, 208
RsaNI	GTAC	3 cut(s)	38, 104, 207
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	3 cut(s)	19, 93, 126
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	5 cut(s)	100, 114, 130, 212, 225
SfcI	CTRYAG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	100, 194, 203
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	3 cut(s)	18, 92, 125
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	17, 37, 46
VpaK11BI	GGWCC	1 cut(s)	299
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.