Rw6G016130

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
31472356 .. 31474377
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016130.1

Sequence Viewer

Length: 927 bp
ATGGCGGACCCCAACTTCTCCTTCCTCCTCCTCTTCCTCCCTCTCGCTCTCCTCCTCCTCCTCTATTTCATTGTCCGCCCCCGCCCCACCACTGTCCCAATCAAGAACCGCCATGTCTTCATCACCGGCGGTTCCAGTGGCATTGGCCTAGCCCTGGCCCACCTCGCAGCCTCTGAGGGTGCCAAAGTCTCCATCCTTGCGCTACCTGACGACAAGCTCGAGGAGGCCAAGAACTACATCCAAATCTCCACCGGCATCGACATCGCTGTCTTCGCCGCCGATGTCCGTGACTACGACGCAGTTTCGAAGGTTGTCGAGGTGGCGGGCCCGATCGATGTGTTGATCGTCAACCAGGGAGTTTTTGTGGCTAGGGAGTTGGAGAAGCAGGGATTGGATGAGGTCAAGTTCGTGGTGGACGTCAATTTGATGGGTAGCTTCAACGTGATCAAAGCTGCTTTGCCGGGAATGAAAGACAGAAAGGACCGTGGACCGGGTTCAATTGCTCTGATGTCCAAATTTGGGCTTCAGGGTTTGGCTGAAGCTCTGCAGCAAGAGGTCATTGTAGATGATATTCACGTTTCGCTGATTTTCCCTCCGGCTACTGACACTCCTGGACTCACTAAAGAAACTAAGACGAGGCCGCAACTTACCAGCACAATAGTCGAAACCTCTGGTATAATGAAAGCCGAGGAAGTTGCAAAGAAAGCTTTGGATGGAATCAAATCTGCTTCCTTTATTGTGCCTTGTAACTTTGTAGGGCTTTTGTTGTCCATTGCCATTGCTGGGTTGTCACCCCAGAGATCATTCATCATGGCATTTATGGAGGTGGTTGCTGGTGGTATAATACGGATAGTTGCTCTGGGATTGCAGTGGAATTGGTATACAAGTATACTCAAGTGGCATGGACAAAACAAAGTAAGGACCTAA

Protein Analysis

308

Amino Acids

33.25

Weight (kDa)

6.92

Isoelectric Point (pI)

24.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 38 - 167 1.2e-23 short chain dehydrogenase
KR PF08659 39 - 151 6.9e-06 KR domain
adh_short_C2 PF13561 46 - 175 9.2e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AatII GACGTC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 179
AccI GTMKAC 2 cut(s) 881, 889
AciI CCGC 8 cut(s) 5, 76, 82, 109, 129, 276, 323, 641
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 2 cut(s) 509, 558
AcyI GRCGYC 1 cut(s) 417
AfiI CCNNNNNNNGG 4 cut(s) 154, 490, 519, 783
AgsI TTSAA 2 cut(s) 439, 498
AjnI CCWGG 3 cut(s) 153, 351, 610
AjuI GAANNNNNNNTTGG 3 cut(s) 37, 374, 406
AluBI AGCT 5 cut(s) 217, 435, 452, 542, 707
AluI AGCT 5 cut(s) 217, 435, 452, 542, 707
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 5 cut(s) 145, 156, 225, 325, 638
ApaI GGGCCC 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 167, 452, 547
ApoI RAATTY 1 cut(s) 515
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 7 cut(s) 7, 157, 325, 326, 481, 488, 921
AsuC2I CCSGG 2 cut(s) 462, 492
AsuHPI GGTGA 2 cut(s) 115, 783
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 4 cut(s) 7, 481, 488, 921
BaeGI GKGCMC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 109, 262
BbvI GCAGC 3 cut(s) 179, 439, 559
BccI CCATC 3 cut(s) 200, 421, 707
BcgI CGANNNNNNTGC 6 cut(s) 244, 278, 643, 677, 677, 711
BciT130I CCWGG 3 cut(s) 155, 353, 612
BclI TGATCA 1 cut(s) 444
BcnI CCSGG 2 cut(s) 462, 492
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 2 cut(s) 149, 369
BfmI CTRYAG 1 cut(s) 545
BisI GCNGC 5 cut(s) 168, 276, 453, 548, 641
BlsI GCNGC 5 cut(s) 169, 277, 454, 549, 642
Bme1390I CCNGG 5 cut(s) 155, 353, 462, 492, 612
Bme18I GGWCC 4 cut(s) 7, 481, 488, 921
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 7 cut(s) 7, 157, 325, 326, 481, 488, 921
BmiI GGNNCC 4 cut(s) 9, 133, 181, 327
BmrFI CCNGG 5 cut(s) 155, 353, 462, 492, 612
BmsI GCATC 1 cut(s) 264
BpiI GAAGAC 2 cut(s) 109, 262
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 2 cut(s) 462, 492
Bsa29I ATCGAT 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 4 cut(s) 153, 352, 484, 687
BsaXI ACNNNNNCTCC 4 cut(s) 348, 378, 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 490, 519, 783
Bse118I RCCGGY 2 cut(s) 125, 251
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 771, 777
BseBI CCWGG 3 cut(s) 155, 353, 612
BseCI ATCGAT 1 cut(s) 333
BseDI CCNNGG 4 cut(s) 153, 352, 484, 687
BseGI GGATG 4 cut(s) 192, 237, 400, 718
BseLI CCNNNNNNNGG 4 cut(s) 154, 490, 519, 783
BseMI GCAATG 2 cut(s) 771, 777
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 7 cut(s) 17, 20, 41, 44, 47, 50, 236
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 3 cut(s) 179, 439, 559
BseYI CCCAGC 1 cut(s) 782
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 5 cut(s) 147, 158, 227, 327, 640
BshNI GGYRCC 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 5 cut(s) 126, 252, 461, 491, 596
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 4 cut(s) 154, 490, 519, 783
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 5 cut(s) 147, 158, 227, 327, 640
BsoBI CYCGRG 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 305
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 4 cut(s) 330, 342, 444, 800
BspACI CCGC 8 cut(s) 5, 76, 82, 109, 129, 276, 323, 641
BspANI GGCC 5 cut(s) 147, 158, 227, 327, 640
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 333
BspLI GGNNCC 4 cut(s) 9, 133, 181, 327
BspMAI CTGCAG 1 cut(s) 549
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 2 cut(s) 771, 777
BsrFI RCCGGY 2 cut(s) 125, 251
BsrI ACTGG 1 cut(s) 135
BssAI RCCGGY 2 cut(s) 125, 251
BssECI CCNNGG 4 cut(s) 153, 352, 484, 687
BssMI GATC 4 cut(s) 330, 342, 444, 800
BssNAI GTATAC 2 cut(s) 882, 890
BssNI GRCGYC 1 cut(s) 417
Bst1107I GTATAC 2 cut(s) 882, 890
Bst2UI CCWGG 3 cut(s) 155, 353, 612
Bst4CI ACNGT 2 cut(s) 94, 485
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 417
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 174, 630
BstDSI CCRYGG 1 cut(s) 484
BstF5I GGATG 4 cut(s) 192, 237, 400, 718
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 4 cut(s) 333, 345, 447, 803
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 4 cut(s) 330, 342, 444, 800
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 3 cut(s) 164, 272, 704
BstNI CCWGG 3 cut(s) 155, 353, 612
BstSCI CCNGG 5 cut(s) 153, 351, 460, 490, 610
BstSFI CTRYAG 1 cut(s) 545
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 3 cut(s) 179, 439, 559
BstV2I GAAGAC 2 cut(s) 109, 262
BstZ17I GTATAC 2 cut(s) 882, 890
Bsu15I ATCGAT 1 cut(s) 333
BsuRI GGCC 5 cut(s) 147, 158, 227, 327, 640
BsuTUI ATCGAT 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 484
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 4 cut(s) 192, 237, 400, 718
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 3 cut(s) 90, 142, 875
Cac8I GCNNGC 1 cut(s) 325
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 2 cut(s) 125, 251
Cfr13I GGNCC 7 cut(s) 7, 157, 325, 326, 481, 488, 921
ClaI ATCGAT 1 cut(s) 333
CseI GACGC 1 cut(s) 305
CviAII CATG 3 cut(s) 113, 811, 902
DdeI CTNAG 2 cut(s) 174, 630
DpnI GATC 4 cut(s) 332, 344, 446, 802
DpnII GATC 4 cut(s) 330, 342, 444, 800
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 2 cut(s) 20, 65
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 4 cut(s) 7, 481, 488, 921
Eco57I CTGAAG 2 cut(s) 509, 558
Eco88I CYCGRG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 921
EcoRII CCWGG 3 cut(s) 153, 351, 610
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 3 cut(s) 116, 814, 905
FaiI YATR 8 cut(s) 114, 677, 812, 821, 842, 882, 890, 903
FaqI GGGAC 1 cut(s) 80
FatI CATG 3 cut(s) 112, 810, 901
FauI CCCGC 2 cut(s) 89, 316
FbaI TGATCA 1 cut(s) 444
FblI GTMKAC 2 cut(s) 881, 889
Fnu4HI GCNGC 5 cut(s) 168, 276, 453, 548, 641
FokI GGATG 4 cut(s) 179, 224, 407, 725
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 5 cut(s) 168, 276, 453, 548, 641
FspBI CTAG 2 cut(s) 149, 369
GlaI GCGC 1 cut(s) 201
GluI GCNGC 5 cut(s) 168, 276, 453, 548, 641
GsaI CCCAGC 1 cut(s) 786
HaeIII GGCC 5 cut(s) 147, 158, 227, 327, 640
HapII CCGG 5 cut(s) 126, 252, 461, 491, 596
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 3 cut(s) 116, 814, 905
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 2 cut(s) 615, 717
HpaII CCGG 5 cut(s) 126, 252, 461, 491, 596
HphI GGTGA 2 cut(s) 115, 783
Hpy166II GTNNAC 5 cut(s) 349, 415, 488, 882, 890
Hpy188I TCNGA 2 cut(s) 175, 507
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 5 cut(s) 349, 415, 488, 882, 890
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 31, 301
HpyCH4III ACNGT 2 cut(s) 94, 485
HpyCH4IV ACGT 3 cut(s) 417, 441, 576
HpyCH4V TGCA 3 cut(s) 547, 698, 868
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 272, 704
HpyF3I CTNAG 2 cut(s) 174, 630
HpySE526I ACGT 3 cut(s) 417, 441, 576
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 3 cut(s) 116, 814, 905
HspAI GCGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 4 cut(s) 330, 342, 444, 800
Lsp1109I GCAGC 3 cut(s) 179, 439, 559
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 149, 369
MaeII ACGT 3 cut(s) 417, 441, 576
MaeIII GTNAC 3 cut(s) 287, 746, 789
MalI GATC 4 cut(s) 332, 344, 446, 802
MboI GATC 4 cut(s) 330, 342, 444, 800
MboII GAAGA 3 cut(s) 25, 109, 262
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 4 cut(s) 421, 498, 515, 874
MlyI GAGTC 1 cut(s) 609
MmeI TCCRAC 1 cut(s) 357
MspI CCGG 5 cut(s) 126, 252, 461, 491, 596
MspR9I CCNGG 5 cut(s) 155, 353, 462, 492, 612
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 3 cut(s) 155, 353, 612
MwoI GCNNNNNNNGC 3 cut(s) 164, 272, 704
NciI CCSGG 2 cut(s) 462, 492
NdeII GATC 4 cut(s) 330, 342, 444, 800
NlaIII CATG 3 cut(s) 116, 814, 905
NlaIV GGNNCC 4 cut(s) 9, 133, 181, 327
NmeAIII GCCGAG 1 cut(s) 712
NmuCI GTSAC 2 cut(s) 287, 789
NspV TTCGAA 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 218
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 414
PfeI GAWTC 1 cut(s) 717
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 5 cut(s) 169, 277, 454, 549, 642
Ple19I CGATCG 1 cut(s) 333
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
PpuMI RGGWCCY 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 921
Psp6I CCWGG 3 cut(s) 153, 351, 610
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 3 cut(s) 153, 351, 610
PspN4I GGNNCC 4 cut(s) 9, 133, 181, 327
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 7 cut(s) 7, 157, 325, 326, 481, 488, 921
PspPPI RGGWCCY 1 cut(s) 921
PspXI VCTCGAGB 1 cut(s) 218
PstI CTGCAG 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 173
PvuI CGATCG 1 cut(s) 333
SatI GCNGC 5 cut(s) 168, 276, 453, 548, 641
Sau3AI GATC 4 cut(s) 330, 342, 444, 800
Sau96I GGNCC 7 cut(s) 7, 157, 325, 326, 481, 488, 921
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 5 cut(s) 155, 353, 462, 492, 612
SduI GDGCHC 1 cut(s) 329
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 545
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 305
SgrAI CRCCGGYG 1 cut(s) 125
SinI GGWCC 4 cut(s) 7, 481, 488, 921
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 218, 893
SmoI CTYRAG 2 cut(s) 218, 893
Sse9I AATT 4 cut(s) 421, 498, 515, 874
SsiI CCGC 8 cut(s) 5, 76, 82, 109, 129, 276, 323, 641
SspMI CTAG 2 cut(s) 149, 369
StyD4I CCNGG 5 cut(s) 153, 351, 460, 490, 610
TaaI ACNGT 2 cut(s) 94, 485
TaiI ACGT 3 cut(s) 420, 444, 579
TaqI TCGA 6 cut(s) 219, 258, 305, 315, 333, 663
TasI AATT 4 cut(s) 421, 498, 515, 874
TauI GCSGC 2 cut(s) 278, 643
TfiI GAWTC 1 cut(s) 717
TscAI CASTG 3 cut(s) 97, 142, 875
TseFI GTSAC 2 cut(s) 287, 789
TseI GCWGC 3 cut(s) 167, 452, 547
Tsp45I GTSAC 2 cut(s) 287, 789
TspDTI ATGAA 5 cut(s) 58, 109, 482, 695, 796
TspGWI ACGGA 2 cut(s) 275, 862
TspRI CASTG 3 cut(s) 97, 142, 875
VpaK11BI GGWCC 4 cut(s) 7, 481, 488, 921
XapI RAATTY 1 cut(s) 515
XhoI CTCGAG 1 cut(s) 218
XmiI GTMKAC 2 cut(s) 881, 889
XspI CTAG 2 cut(s) 149, 369
ZraI GACGTC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.