Rh6CG189300

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
30881748 .. 30883793
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG189300.1

Sequence Viewer

Length: 978 bp
ATGGCAGACCCCATCTTCTCCTTCCTCCTCCTCCTCCCTCTCGCTCTCCTCCTCCTCCTCCTCCTCTACTTCATTGTCCGACCCCTCCCAACCACTGTCCCAATCAAGAACCGCCACGTCTTCATCACCGGTGGTTCTAGCGGCATCGGTCTCGCCCTGGCCCACCGCGCCGCCTCTGAGGGTGCCAAAGTCTCCATCCTTGCGCGCTCTTTCGATAAGCTCGAGGAGGCCAAGAACTACATCCAGCTCTCCACAGGCATCGACGTCACCATCTTCGCTGCCGACGTACGTGACTACGAAGCAGTTTCGAAGGCTGTCGAGGCAGCGGGCCCGATCGATGTGTTGGTCATCAACCATGGAGTGTTTGTGGCCGCGGAGTTAGAGAAGCAGGGATTGGATGAGGTCAGGTTCATGGCAGACGTCAATTTGATGGGTAGCTTCAACATGATCAAAGCTGCTTTGCCGAGAATGAAAGACAGGAAGGACCGTGGACCGGGTTCGATTGCTTTGATGTCATCTCAGGTCGGTCAGGTTGGGATTTACGGCTACGCGGCTTATTCCGCTAGCAAATTTGGGCTACGGGGTTTGGCTGAAGCTCTACAGCAAGAGGTCATTGTAGACGACATTCACGTTTCACTGATTTTCCCTCCGGCTACTGACACTCCTGGACTCACTAAAGAAACTAAGACGAGGCCGCAACTGACCAGCATTATCACGGAATCCTCTAGTGCAATGAAAGCTGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCTTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGCCGGGTTGTCACCTCAGAGATCGTTCATGATGGCATTTGTGGAGGTGGTTGCTGCTGGTATAATACGTATTGCTGCTCTAGGATTTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGTAGCTGA

Protein Analysis

325

Amino Acids

35.05

Weight (kDa)

7.82

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 39 - 229 4e-44 short chain dehydrogenase
KR PF08659 40 - 202 7.9e-10 KR domain
adh_short_C2 PF13561 47 - 252 2.6e-27 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 267, 423
AccB1I GGYRCC 1 cut(s) 182
AccI GTMKAC 3 cut(s) 618, 935, 943
AccII CGCG 4 cut(s) 168, 205, 374, 551
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 1 cut(s) 612
AcyI GRCGYC 2 cut(s) 264, 420
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 493, 837
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 2 cut(s) 442, 809
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 2 cut(s) 156, 664
AjuI GAANNNNNNNTTGG 4 cut(s) 377, 409, 746, 778
AluBI AGCT 8 cut(s) 220, 247, 438, 455, 596, 740, 761, 975
AluI AGCT 8 cut(s) 220, 247, 438, 455, 596, 740, 761, 975
Alw26I GTCTC 2 cut(s) 155, 196
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 5 cut(s) 159, 228, 328, 369, 692
ApaI GGGCCC 1 cut(s) 332
ApeKI GCWGC 5 cut(s) 278, 323, 455, 887, 908
ApoI RAATTY 1 cut(s) 569
AsiGI ACCGGT 1 cut(s) 128
AspLEI GCGC 3 cut(s) 170, 205, 207
AspS9I GGNCC 5 cut(s) 160, 328, 329, 484, 491
AsuC2I CCSGG 2 cut(s) 495, 838
AsuHPI GGTGA 3 cut(s) 118, 259, 837
AsuII TTCGAA 1 cut(s) 308
AsuNHI GCTAGC 1 cut(s) 563
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 484, 491
BaeGI GKGCMC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 112
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 5 cut(s) 265, 335, 442, 874, 895
BccI CCATC 6 cut(s) 20, 203, 278, 424, 761, 859
BceAI ACGGC 1 cut(s) 559
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 2 cut(s) 158, 666
BclI TGATCA 1 cut(s) 447
BcnI CCSGG 2 cut(s) 495, 838
BcoDI GTCTC 2 cut(s) 155, 196
BfaI CTAG 4 cut(s) 138, 564, 726, 914
BfmI CTRYAG 1 cut(s) 599
Bme1390I CCNGG 4 cut(s) 158, 495, 666, 838
Bme18I GGWCC 2 cut(s) 484, 491
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 5 cut(s) 160, 328, 329, 484, 491
BmiI GGNNCC 2 cut(s) 184, 330
BmrFI CCNGG 4 cut(s) 158, 495, 666, 838
BmsI GCATC 2 cut(s) 153, 267
BmtI GCTAGC 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 495, 838
Bsa29I ATCGAT 1 cut(s) 336
BsaAI YACGTR 2 cut(s) 290, 902
BsaHI GRCGYC 2 cut(s) 264, 420
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 4 cut(s) 156, 355, 372, 487
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 646, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 493, 837
Bse118I RCCGGY 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 2 cut(s) 158, 666
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 4 cut(s) 156, 355, 372, 487
BseGI GGATG 4 cut(s) 195, 240, 403, 772
BseLI CCNNNNNNNGG 2 cut(s) 493, 837
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 4 cut(s) 168, 533, 732, 863
BsePI GCGCGC 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 5 cut(s) 265, 335, 442, 874, 895
Bsh1236I CGCG 4 cut(s) 168, 205, 374, 551
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 5 cut(s) 161, 230, 330, 371, 694
BshNI GGYRCC 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 129, 494, 650, 837
BsiWI CGTACG 1 cut(s) 286
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 493, 837
BsmAI GTCTC 2 cut(s) 155, 196
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 5 cut(s) 161, 230, 330, 371, 694
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 308
Bsp120I GGGCCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 3 cut(s) 333, 447, 854
Bsp19I CCATGG 1 cut(s) 355
BspANI GGCC 5 cut(s) 161, 230, 330, 371, 694
BspCNI CTCAG 4 cut(s) 169, 532, 733, 862
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 4 cut(s) 168, 205, 374, 551
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 2 cut(s) 184, 330
BspOI GCTAGC 1 cut(s) 567
BspT104I TTCGAA 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 738
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 4 cut(s) 156, 355, 372, 487
BssHII GCGCGC 1 cut(s) 203
BssMI GATC 3 cut(s) 333, 447, 854
BssNAI GTATAC 2 cut(s) 936, 944
BssNI GRCGYC 2 cut(s) 264, 420
BssT1I CCWWGG 1 cut(s) 355
Bst1107I GTATAC 2 cut(s) 936, 944
Bst2UI CCWGG 2 cut(s) 158, 666
Bst4CI ACNGT 2 cut(s) 97, 488
BstACI GRCGYC 2 cut(s) 264, 420
BstBAI YACGTR 2 cut(s) 290, 902
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 205, 328, 565
BstDEI CTNAG 5 cut(s) 177, 519, 684, 741, 849
BstDSI CCRYGG 3 cut(s) 355, 372, 487
BstF5I GGATG 4 cut(s) 195, 240, 403, 772
BstFNI CGCG 4 cut(s) 168, 205, 374, 551
BstHHI GCGC 3 cut(s) 170, 205, 207
BstKTI GATC 3 cut(s) 336, 450, 857
BstMAI GTCTC 2 cut(s) 155, 196
BstMBI GATC 3 cut(s) 333, 447, 854
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 5 cut(s) 167, 320, 560, 737, 758
BstNI CCWGG 2 cut(s) 158, 666
BstSCI CCNGG 4 cut(s) 156, 493, 664, 836
BstSFI CTRYAG 1 cut(s) 599
BstSLI GKGCMC 1 cut(s) 332
BstSNI TACGTA 1 cut(s) 902
BstUI CGCG 4 cut(s) 168, 205, 374, 551
BstV1I GCAGC 5 cut(s) 265, 335, 442, 874, 895
BstV2I GAAGAC 1 cut(s) 112
BstZ17I GTATAC 2 cut(s) 936, 944
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 5 cut(s) 161, 230, 330, 371, 694
BsuTUI ATCGAT 1 cut(s) 336
BtgI CCRYGG 3 cut(s) 355, 372, 487
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 4 cut(s) 195, 240, 403, 772
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 4 cut(s) 93, 635, 831, 929
Cac8I GCNNGC 3 cut(s) 205, 328, 565
CciI TCATGA 1 cut(s) 861
CfoI GCGC 3 cut(s) 170, 205, 207
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 5 cut(s) 160, 328, 329, 484, 491
Cfr42I CCGCGG 1 cut(s) 375
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 1 cut(s) 287
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 5 cut(s) 356, 412, 445, 862, 956
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 5 cut(s) 177, 519, 684, 741, 849
DpnI GATC 3 cut(s) 335, 449, 856
DpnII GATC 3 cut(s) 333, 447, 854
EaeI YGGCCR 1 cut(s) 369
Eco105I TACGTA 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 484, 491
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 156, 664
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 5 cut(s) 359, 415, 448, 865, 959
FaiI YATR 8 cut(s) 357, 413, 446, 863, 896, 936, 944, 957
FaqI GGGAC 1 cut(s) 83
FatI CATG 5 cut(s) 355, 411, 444, 861, 955
FauI CCCGC 1 cut(s) 319
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 3 cut(s) 618, 935, 943
FokI GGATG 4 cut(s) 182, 227, 410, 779
FriOI GRGCYC 1 cut(s) 332
FspBI CTAG 4 cut(s) 138, 564, 726, 914
GlaI GCGC 3 cut(s) 169, 204, 206
HaeIII GGCC 5 cut(s) 161, 230, 330, 371, 694
HapII CCGG 4 cut(s) 129, 494, 650, 837
HhaI GCGC 3 cut(s) 170, 205, 207
Hin1I GRCGYC 2 cut(s) 264, 420
Hin1II CATG 5 cut(s) 359, 415, 448, 865, 959
Hin6I GCGC 3 cut(s) 168, 203, 205
HinP1I GCGC 3 cut(s) 168, 203, 205
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 3 cut(s) 669, 719, 771
HpaII CCGG 4 cut(s) 129, 494, 650, 837
HphI GGTGA 3 cut(s) 118, 259, 837
Hpy166II GTNNAC 4 cut(s) 491, 619, 936, 944
Hpy188I TCNGA 3 cut(s) 80, 178, 852
Hpy188III TCNNGA 2 cut(s) 106, 862
Hpy8I GTNNAC 4 cut(s) 491, 619, 936, 944
Hpy99I CGWCG 2 cut(s) 266, 287
HpyAV CCTTC 4 cut(s) 31, 304, 475, 803
HpyCH4III ACNGT 2 cut(s) 97, 488
HpyCH4IV ACGT 7 cut(s) 117, 264, 285, 289, 420, 630, 901
HpyCH4V TGCA 2 cut(s) 731, 801
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 320, 560, 737, 758
HpyF3I CTNAG 5 cut(s) 177, 519, 684, 741, 849
HpySE526I ACGT 7 cut(s) 117, 264, 285, 289, 420, 630, 901
Hsp92I GRCGYC 2 cut(s) 264, 420
Hsp92II CATG 5 cut(s) 359, 415, 448, 865, 959
HspAI GCGC 3 cut(s) 168, 203, 205
Ksp22I TGATCA 1 cut(s) 447
KspI CCGCGG 1 cut(s) 375
Kzo9I GATC 3 cut(s) 333, 447, 854
Lsp1109I GCAGC 5 cut(s) 265, 335, 442, 874, 895
LweI GCATC 2 cut(s) 153, 267
MaeI CTAG 4 cut(s) 138, 564, 726, 914
MaeII ACGT 7 cut(s) 117, 264, 285, 289, 420, 630, 901
MaeIII GTNAC 3 cut(s) 265, 290, 843
MalI GATC 3 cut(s) 335, 449, 856
MboI GATC 3 cut(s) 333, 447, 854
MboII GAAGA 4 cut(s) 7, 112, 265, 766
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 3 cut(s) 424, 569, 928
MlyI GAGTC 1 cut(s) 663
MmeI TCCRAC 1 cut(s) 103
MspA1I CMGCKG 2 cut(s) 326, 374
MspI CCGG 4 cut(s) 129, 494, 650, 837
MspR9I CCNGG 4 cut(s) 158, 495, 666, 838
MvaI CCWGG 2 cut(s) 158, 666
MvnI CGCG 4 cut(s) 168, 205, 374, 551
MwoI GCNNNNNNNGC 5 cut(s) 167, 320, 560, 737, 758
NciI CCSGG 2 cut(s) 495, 838
NcoI CCATGG 1 cut(s) 355
NdeII GATC 3 cut(s) 333, 447, 854
NheI GCTAGC 1 cut(s) 563
NlaIII CATG 5 cut(s) 359, 415, 448, 865, 959
NlaIV GGNNCC 2 cut(s) 184, 330
NmeAIII GCCGAG 1 cut(s) 489
NmuCI GTSAC 3 cut(s) 265, 290, 843
NspV TTCGAA 1 cut(s) 308
PaeR7I CTCGAG 1 cut(s) 221
PagI TCATGA 1 cut(s) 861
PauI GCGCGC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 3 cut(s) 219, 282, 627
PfeI GAWTC 2 cut(s) 719, 771
Pfl23II CGTACG 1 cut(s) 286
PfoI TCCNGGA 1 cut(s) 664
PinAI ACCGGT 1 cut(s) 128
Ple19I CGATCG 1 cut(s) 336
PleI GAGTC 1 cut(s) 663
PpsI GAGTC 1 cut(s) 663
Ppu21I YACGTR 2 cut(s) 290, 902
Psp6I CCWGG 2 cut(s) 156, 664
PspGI CCWGG 2 cut(s) 156, 664
PspLI CGTACG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 184, 330
PspOMI GGGCCC 1 cut(s) 328
PspPI GGNCC 5 cut(s) 160, 328, 329, 484, 491
PspXI VCTCGAGB 1 cut(s) 221
PteI GCGCGC 1 cut(s) 203
PvuI CGATCG 1 cut(s) 336
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SacII CCGCGG 1 cut(s) 375
Sau3AI GATC 3 cut(s) 333, 447, 854
Sau96I GGNCC 5 cut(s) 160, 328, 329, 484, 491
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 4 cut(s) 158, 495, 666, 838
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 2 cut(s) 153, 267
SfcI CTRYAG 1 cut(s) 599
Sfr274I CTCGAG 1 cut(s) 221
Sfr303I CCGCGG 1 cut(s) 375
SfuI TTCGAA 1 cut(s) 308
SgrAI CRCCGGYG 1 cut(s) 128
SgrBI CCGCGG 1 cut(s) 375
SinI GGWCC 2 cut(s) 484, 491
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SnaBI TACGTA 1 cut(s) 902
Sse9I AATT 3 cut(s) 424, 569, 928
SspMI CTAG 4 cut(s) 138, 564, 726, 914
StyD4I CCNGG 4 cut(s) 156, 493, 664, 836
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 97, 488
TaiI ACGT 7 cut(s) 120, 267, 288, 292, 423, 633, 904
TaqI TCGA 7 cut(s) 213, 222, 261, 308, 318, 336, 500
TaqII GACCGA 2 cut(s) 137, 515
TasI AATT 3 cut(s) 424, 569, 928
TauI GCSGC 5 cut(s) 144, 173, 374, 554, 697
TfiI GAWTC 2 cut(s) 719, 771
TscAI CASTG 4 cut(s) 100, 642, 838, 929
TseFI GTSAC 3 cut(s) 265, 290, 843
TseI GCWGC 5 cut(s) 278, 323, 455, 887, 908
Tsp45I GTSAC 3 cut(s) 265, 290, 843
TspDTI ATGAA 6 cut(s) 61, 112, 400, 485, 749, 850
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 4 cut(s) 100, 642, 838, 929
VpaK11BI GGWCC 2 cut(s) 484, 491
XapI RAATTY 1 cut(s) 569
XhoI CTCGAG 1 cut(s) 221
XmiI GTMKAC 3 cut(s) 618, 935, 943
XspI CTAG 4 cut(s) 138, 564, 726, 914
ZraI GACGTC 2 cut(s) 265, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.