AT5G19200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6458776 .. 6461060
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19200.1

Sequence Viewer

Length: 996 bp
ATGGCGGCAATTTTTTCTCTCTTCCTTTTCTTCATTCTCTTCATCGTCTCTCTTCTCATCATCTTATCTTTCATCGTACGGCCAAGATCCGTCACGATCCCCATCAAGTTTCGCCACGTCTTCATCACCGGTGGATCAAGCGGAATCGGTCTCGCTCTCGCTCACCGTGCCGTCTCCGAAGGCGCTAAAGTCTCCATCCTCGCTCGTTCAACTGAAAAGCTCGCCGAAGCCAAACGATCCATCCAGCTAGCTACCGGTGTCGAGGTCGCCACGTTCTCTGCGGACGTTCGCGATTACGACGCCGTTTCGAAAGCGATTGATGAATCGGGACCGATCGATGTGTTGATTGTTAATCAAGGCGTGTTTATTGGGAAAGAGCTTGAGAAACAGAGTCCTGAGGAGGTTAAGTTTATGATTGATGTGAATCTGACTGGGAGCTTCAATGTGATTAAGGCGGCTTTACCTGCTATGAAAGCTAGGGAAGGTCGTGGTCCTGCTTCCATTTCTCTTGTGTCCTCTCAAGCTGGTCAGGCAGGTATATATGGTTACACTGCATATTCAGCGAGCAAGTTTGGGCTTCAGGGTTTAGCGCAAGCATTGCAGCAAGAAGTTATTTCTGATGGCATTCATGTGACTCTCTTGTTTCCTCCTGACACTGATACACCCGGGTTTGAACAAGAACTGAAGAAGAGGCCAGAGCTAACTTCAATCATAGCCGCATCATCTGGCTCAATGAAAACCAATGAAGTAGCCAAAATATGTTTTGATGGTATCAAAGCAGGAAAATTCACAGTGACATGCCATTTTATTGGCTTCTTACTATCTATTGCTAGCACCGGCATGTCCCCTCAGGGATCTTTTTGGCTTGCACTCACTGAAGTTATGTTTGGTGGTCTAATAAGACTCGCCAGCTTGGTTTTCCAATGGCAATGGTACAAAACCATAGAAAAGTGGAGCCAAAGAAATAAAAAAGAAGTAAATAGTAAGTTAGCTTAG

Protein Analysis

331

Amino Acids

35.83

Weight (kDa)

9.21

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 39 - 227 4.1e-45 short chain dehydrogenase
KR PF08659 40 - 203 8.7e-12 KR domain
Epimerase PF01370 40 - 155 2.9e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 47 - 241 1.2e-26 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 472, 524
AccII CGCG 1 cut(s) 291
AciI CCGC 5 cut(s) 5, 141, 281, 455, 717
AclWI GGATC 5 cut(s) 81, 91, 142, 231, 862
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 1 cut(s) 785
AcuI CTGAAG 3 cut(s) 563, 704, 897
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 78, 935
AgeI ACCGGT 2 cut(s) 128, 254
AgsI TTSAA 4 cut(s) 210, 442, 674, 708
AjiI CACGTC 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
Alw26I GTCTC 4 cut(s) 52, 155, 178, 196
AlwI GGATC 5 cut(s) 81, 91, 142, 231, 862
Ama87I CYCGRG 1 cut(s) 665
AoxI GGCC 2 cut(s) 80, 692
ApeKI GCWGC 1 cut(s) 601
ApoI RAATTY 1 cut(s) 785
AsiGI ACCGGT 2 cut(s) 128, 254
AspLEI GCGC 2 cut(s) 185, 592
AspS9I GGNCC 2 cut(s) 329, 491
AsuC2I CCSGG 2 cut(s) 666, 667
AsuHPI GGTGA 2 cut(s) 118, 155
AsuII TTCGAA 1 cut(s) 308
AsuNHI GCTAGC 2 cut(s) 247, 830
AvaI CYCGRG 1 cut(s) 665
AvaII GGWCC 2 cut(s) 329, 491
AxyI CCTNAGG 2 cut(s) 396, 849
BbsI GAAGAC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 613
BccI CCATC 5 cut(s) 110, 203, 248, 614, 761
BceAI ACGGC 3 cut(s) 95, 155, 287
BcnI CCSGG 2 cut(s) 666, 667
BcoDI GTCTC 4 cut(s) 52, 155, 178, 196
BfaI CTAG 3 cut(s) 248, 477, 831
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 2 cut(s) 472, 524
BisI GCNGC 4 cut(s) 6, 456, 602, 717
BlsI GCNGC 4 cut(s) 7, 457, 603, 718
Bme1390I CCNGG 2 cut(s) 666, 667
Bme18I GGWCC 2 cut(s) 329, 491
BmeT110I CYCGRG 1 cut(s) 665
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 329, 491
BmiI GGNNCC 2 cut(s) 330, 956
BmrFI CCNGG 2 cut(s) 666, 667
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 728
BmtI GCTAGC 2 cut(s) 251, 834
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 112
Bpu14I TTCGAA 1 cut(s) 308
BpuEI CTTGAG 2 cut(s) 401, 504
BpuMI CCSGG 2 cut(s) 666, 667
Bsa29I ATCGAT 1 cut(s) 336
BsaBI GATNNNNATC 2 cut(s) 101, 423
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 665
BsaWI WCCGGW 2 cut(s) 128, 254
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bse118I RCCGGY 3 cut(s) 128, 254, 836
Bse1I ACTGG 1 cut(s) 436
Bse21I CCTNAGG 2 cut(s) 396, 849
Bse3DI GCAATG 2 cut(s) 596, 935
Bse8I GATNNNNATC 2 cut(s) 101, 423
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 2 cut(s) 195, 240
BseJI GATNNNNATC 2 cut(s) 101, 423
BseMI GCAATG 2 cut(s) 596, 935
BseMII CTCAG 2 cut(s) 387, 863
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 1 cut(s) 613
Bsh1236I CGCG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 82, 694
BshTI ACCGGT 2 cut(s) 128, 254
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 665
BsiSI CCGG 4 cut(s) 129, 255, 666, 837
BsiWI CGTACG 1 cut(s) 76
BslFI GGGAC 2 cut(s) 342, 829
BsmAI GTCTC 4 cut(s) 52, 155, 178, 196
BsmBI CGTCTC 2 cut(s) 52, 178
BsmFI GGGAC 2 cut(s) 342, 829
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 2 cut(s) 82, 694
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 665
Bsp119I TTCGAA 1 cut(s) 308
Bsp143I GATC 6 cut(s) 86, 96, 134, 236, 333, 854
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 5 cut(s) 5, 141, 281, 455, 717
BspANI GGCC 2 cut(s) 82, 694
BspCNI CTCAG 2 cut(s) 388, 862
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 330, 956
BspMI ACCTGC 2 cut(s) 472, 524
BspOI GCTAGC 2 cut(s) 251, 834
BspPI GGATC 5 cut(s) 81, 91, 142, 231, 862
BspT104I TTCGAA 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 596, 935
BsrFI RCCGGY 3 cut(s) 128, 254, 836
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 3 cut(s) 128, 254, 836
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 6 cut(s) 86, 96, 134, 236, 333, 854
BssNI GRCGYC 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 167, 793
Bst6I CTCTTC 4 cut(s) 26, 44, 57, 683
BstACI GRCGYC 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 598
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 7 cut(s) 222, 249, 565, 594, 832, 867, 910
BstDEI CTNAG 3 cut(s) 396, 849, 993
BstF5I GGATG 2 cut(s) 195, 240
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 2 cut(s) 185, 592
BstKTI GATC 6 cut(s) 89, 99, 137, 239, 336, 857
BstMAI GTCTC 4 cut(s) 52, 155, 178, 196
BstMBI GATC 6 cut(s) 86, 96, 134, 236, 333, 854
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 6 cut(s) 167, 464, 473, 530, 560, 598
BstNSI RCATGY 2 cut(s) 801, 844
BstSCI CCNGG 2 cut(s) 664, 665
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 613
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 86, 854
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 2 cut(s) 86, 854
Bsu15I ATCGAT 1 cut(s) 336
Bsu36I CCTNAGG 2 cut(s) 396, 849
BsuRI GGCC 2 cut(s) 82, 694
BsuTUI ATCGAT 1 cut(s) 336
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 195, 240
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 4 cut(s) 549, 654, 798, 873
BtuMI TCGCGA 1 cut(s) 291
BveI ACCTGC 2 cut(s) 472, 524
Cac8I GCNNGC 7 cut(s) 222, 249, 565, 594, 832, 867, 910
CfoI GCGC 2 cut(s) 185, 592
Cfr10I RCCGGY 3 cut(s) 128, 254, 836
Cfr13I GGNCC 2 cut(s) 329, 491
Cfr9I CCCGGG 1 cut(s) 665
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 1 cut(s) 308
Csp6I GTAC 2 cut(s) 77, 934
CspAI ACCGGT 2 cut(s) 128, 254
CviAII CATG 3 cut(s) 629, 798, 841
CviQI GTAC 2 cut(s) 77, 934
DdeI CTNAG 3 cut(s) 396, 849, 993
DpnI GATC 6 cut(s) 88, 98, 136, 238, 335, 856
DpnII GATC 6 cut(s) 86, 96, 134, 236, 333, 854
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 4 cut(s) 26, 44, 57, 683
EarI CTCTTC 4 cut(s) 26, 44, 57, 683
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 329, 491
Eco57I CTGAAG 3 cut(s) 563, 704, 897
Eco81I CCTNAGG 2 cut(s) 396, 849
Eco88I CYCGRG 1 cut(s) 665
Esp3I CGTCTC 2 cut(s) 52, 178
FaeI CATG 3 cut(s) 632, 801, 844
FaqI GGGAC 2 cut(s) 342, 829
FatI CATG 3 cut(s) 628, 797, 840
Fnu4HI GCNGC 4 cut(s) 6, 456, 602, 717
FokI GGATG 2 cut(s) 182, 227
Fsp4HI GCNGC 4 cut(s) 6, 456, 602, 717
FspBI CTAG 3 cut(s) 248, 477, 831
GlaI GCGC 2 cut(s) 184, 591
GluI GCNGC 4 cut(s) 6, 456, 602, 717
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 82, 694
HapII CCGG 4 cut(s) 129, 255, 666, 837
HgaI GACGC 1 cut(s) 308
HhaI GCGC 2 cut(s) 185, 592
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 3 cut(s) 632, 801, 844
Hin6I GCGC 2 cut(s) 183, 590
HinP1I GCGC 2 cut(s) 183, 590
HinfI GANTC 6 cut(s) 144, 323, 391, 424, 634, 903
HpaII CCGG 4 cut(s) 129, 255, 666, 837
HphI GGTGA 2 cut(s) 118, 155
Hpy188I TCNGA 3 cut(s) 178, 429, 619
Hpy188III TCNNGA 5 cut(s) 94, 290, 327, 395, 650
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 173, 476
HpyCH4III ACNGT 2 cut(s) 167, 793
HpyCH4IV ACGT 3 cut(s) 117, 272, 285
HpyCH4V TGCA 3 cut(s) 554, 601, 869
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 464, 473, 530, 560, 598
HpyF3I CTNAG 3 cut(s) 396, 849, 993
HpySE526I ACGT 3 cut(s) 117, 272, 285
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 3 cut(s) 632, 801, 844
HspAI GCGC 2 cut(s) 183, 590
Kzo9I GATC 6 cut(s) 86, 96, 134, 236, 333, 854
LmnI GCTCC 2 cut(s) 435, 954
Lsp1109I GCAGC 1 cut(s) 613
LweI GCATC 1 cut(s) 728
MaeI CTAG 3 cut(s) 248, 477, 831
MaeII ACGT 3 cut(s) 117, 272, 285
MaeIII GTNAC 4 cut(s) 91, 545, 631, 793
MalI GATC 6 cut(s) 88, 98, 136, 238, 335, 856
MboI GATC 6 cut(s) 86, 96, 134, 236, 333, 854
MboII GAAGA 7 cut(s) 13, 22, 31, 44, 112, 697, 700
MflI RGATCY 2 cut(s) 86, 854
MluCI AATT 2 cut(s) 9, 785
MlyI GAGTC 3 cut(s) 400, 628, 897
MnlI CCTC 8 cut(s) 209, 256, 391, 394, 526, 657, 684, 858
MseI TTAA 3 cut(s) 351, 405, 450
MslI CAYNNNNRTG 2 cut(s) 629, 839
MspI CCGG 4 cut(s) 129, 255, 666, 837
MspR9I CCNGG 2 cut(s) 666, 667
Mva1269I GAATGC 1 cut(s) 624
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 6 cut(s) 167, 464, 473, 530, 560, 598
NciI CCSGG 2 cut(s) 666, 667
NdeII GATC 6 cut(s) 86, 96, 134, 236, 333, 854
NheI GCTAGC 2 cut(s) 247, 830
NlaIII CATG 3 cut(s) 632, 801, 844
NlaIV GGNNCC 2 cut(s) 330, 956
NmuCI GTSAC 3 cut(s) 91, 631, 793
NruI TCGCGA 1 cut(s) 291
NspI RCATGY 2 cut(s) 801, 844
NspV TTCGAA 1 cut(s) 308
PctI GAATGC 1 cut(s) 624
PfeI GAWTC 3 cut(s) 144, 323, 424
Pfl23II CGTACG 1 cut(s) 76
PinAI ACCGGT 2 cut(s) 128, 254
PkrI GCNGC 4 cut(s) 7, 457, 603, 718
Ple19I CGATCG 1 cut(s) 336
PleI GAGTC 3 cut(s) 399, 628, 897
PpsI GAGTC 3 cut(s) 399, 628, 897
PspLI CGTACG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 330, 956
PspPI GGNCC 2 cut(s) 329, 491
PsuI RGATCY 2 cut(s) 86, 854
PvuI CGATCG 1 cut(s) 336
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 2 cut(s) 78, 935
RsaNI GTAC 2 cut(s) 77, 934
RseI CAYNNNNRTG 2 cut(s) 629, 839
SaqAI TTAA 3 cut(s) 351, 405, 450
SatI GCNGC 4 cut(s) 6, 456, 602, 717
Sau3AI GATC 6 cut(s) 86, 96, 134, 236, 333, 854
Sau96I GGNCC 2 cut(s) 329, 491
SchI GAGTC 3 cut(s) 400, 628, 897
ScrFI CCNGG 2 cut(s) 666, 667
SfaNI GCATC 1 cut(s) 728
SfuI TTCGAA 1 cut(s) 308
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 2 cut(s) 329, 491
SmaI CCCGGG 1 cut(s) 667
SmiMI CAYNNNNRTG 2 cut(s) 629, 839
SmlI CTYRAG 2 cut(s) 380, 519
SmoI CTYRAG 2 cut(s) 380, 519
Sse9I AATT 2 cut(s) 9, 785
SsiI CCGC 5 cut(s) 5, 141, 281, 455, 717
SspMI CTAG 3 cut(s) 248, 477, 831
StyD4I CCNGG 2 cut(s) 664, 665
TaaI ACNGT 2 cut(s) 167, 793
TaiI ACGT 3 cut(s) 120, 275, 288
TaqI TCGA 3 cut(s) 261, 308, 336
TaqII GACCGA 2 cut(s) 137, 346
TasI AATT 2 cut(s) 9, 785
TauI GCSGC 3 cut(s) 8, 458, 719
TfiI GAWTC 3 cut(s) 144, 323, 424
Tru1I TTAA 3 cut(s) 351, 405, 450
Tru9I TTAA 3 cut(s) 351, 405, 450
TscAI CASTG 4 cut(s) 556, 661, 798, 880
TseFI GTSAC 3 cut(s) 91, 631, 793
TseI GCWGC 1 cut(s) 601
Tsp45I GTSAC 3 cut(s) 91, 631, 793
TspDTI ATGAA 9 cut(s) 22, 31, 61, 112, 336, 485, 617, 749, 759
TspGWI ACGGA 1 cut(s) 79
TspMI CCCGGG 1 cut(s) 665
TspRI CASTG 4 cut(s) 556, 661, 798, 880
VpaK11BI GGWCC 2 cut(s) 329, 491
XapI RAATTY 1 cut(s) 785
XceI RCATGY 2 cut(s) 801, 844
XmaI CCCGGG 1 cut(s) 665
XspI CTAG 3 cut(s) 248, 477, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.