Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

22634570 .. 22636308

Gene Structure 1739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCGAACCCCAACATCTCCTTCTTCCTCCTCCTCCACTTCATCGTCCGCCCCCGCCCCACCGCCGCCCCAATCAAGAACCGCCACGTCTTCATCACCGGCGGTTTCAGCGGCATCGGCCTCACCTTGGCCCACCGCGCCACCTCCGAGGGCGCCAAATTAACCGTCTTTACCGCCGACGTCTGTGACTACGACGCAGTTTCGAAGGCTGTCAAGGCGGCGGGCCTGATCGACGTGTTGGATGAGGTCAGGTTCATGGTGGACGTCCATCTGATCGGTAGCTTCAACATGATAAAAGCTGCTTTGCCGGGAATGAAAGACAGGAAGGACCGTGGGCCGGGCTCTACTTTTCTAATGTCGTCTCAGGCAGCTAGCAAATTTGGGCTTCGGGGTTTGGATGAAGCTCTACAGCAAGAAATCATTGCAGATGACATTCATACAAGGCCGCAACTTACCAGCACTATCGTGGAAACCTCTGGTGCAATGAAAGCCAAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGTAGGGCTTTTGTTGTCCATTGCCAGTGCAGGGTTGTCGCCCCAGAGATCATTCGTCATGGCATTTGTGGAGGTGGTTGCTGCTGGTGTAATACGGATAGTTGCTCTGGGATTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

226

Amino Acids

23.97

Weight (kDa)

9.36

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	183, 267
AccB1I	GGYRCC	1 cut(s)	152
AccII	CGCG	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	377
AcyI	GRCGYC	3 cut(s)	153, 180, 264
AfiI	CCNNNNNNNGG	3 cut(s)	127, 337, 588
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	286
AjiI	CACGTC	2 cut(s)	88, 235
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 497, 529
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	5 cut(s)	282, 299, 371, 404, 512
AluI	AGCT	5 cut(s)	282, 299, 371, 404, 512
Alw26I	GTCTC	1 cut(s)	366
AoxI	GGCC	5 cut(s)	118, 129, 223, 335, 443
ApeKI	GCWGC	3 cut(s)	299, 368, 638
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AspLEI	GCGC	2 cut(s)	140, 155
AspS9I	GGNCC	4 cut(s)	130, 223, 328, 335
AsuC2I	CCSGG	2 cut(s)	309, 339
AsuHPI	GGTGA	2 cut(s)	88, 115
AsuII	TTCGAA	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	286, 380, 625
BccI	CCATC	2 cut(s)	276, 512
BcgI	CGANNNNNNTGC	2 cut(s)	576, 610
BcnI	CCSGG	2 cut(s)	309, 339
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	7 cut(s)	66, 112, 219, 300, 369, 446, 639
BlsI	GCNGC	7 cut(s)	67, 113, 220, 301, 370, 447, 640
Bme1390I	CCNGG	2 cut(s)	309, 339
Bme18I	GGWCC	1 cut(s)	328
BmgBI	CACGTC	2 cut(s)	88, 235
BmgT120I	GGNCC	4 cut(s)	130, 223, 328, 335
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	309, 339
BmsI	GCATC	1 cut(s)	123
BmtI	GCTAGC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	309, 339
BsaHI	GRCGYC	3 cut(s)	153, 180, 264
BsaJI	CCNNGG	4 cut(s)	126, 147, 331, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 337, 588
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	582
Bse3DI	GCAATG	3 cut(s)	420, 489, 576
BseDI	CCNNGG	4 cut(s)	126, 147, 331, 492
BseGI	GGATG	3 cut(s)	247, 403, 523
BseLI	CCNNNNNNNGG	3 cut(s)	127, 337, 588
BseMI	GCAATG	3 cut(s)	420, 489, 576
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	2 cut(s)	20, 23
BseXI	GCAGC	3 cut(s)	286, 380, 625
BsgI	GTGCAG	1 cut(s)	606
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	120, 131, 225, 337, 445
BshNI	GGYRCC	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	99, 308, 338
BslI	CCNNNNNNNGG	3 cut(s)	127, 337, 588
BsmAI	GTCTC	1 cut(s)	366
BsmBI	CGTCTC	1 cut(s)	366
BsnI	GGCC	5 cut(s)	120, 131, 225, 337, 445
Bsp119I	TTCGAA	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	228, 273, 605
BspANI	GGCC	5 cut(s)	120, 131, 225, 337, 445
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	152
BsrDI	GCAATG	3 cut(s)	420, 489, 576
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	4 cut(s)	126, 147, 331, 492
BssMI	GATC	3 cut(s)	228, 273, 605
BssNI	GRCGYC	3 cut(s)	153, 180, 264
BssT1I	CCWWGG	2 cut(s)	126, 492
Bst4CI	ACNGT	2 cut(s)	166, 332
BstACI	GRCGYC	3 cut(s)	153, 180, 264
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	223, 373
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	3 cut(s)	247, 403, 523
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	140, 155
BstKTI	GATC	3 cut(s)	231, 276, 608
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	3 cut(s)	228, 273, 605
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 117, 137, 215, 488, 509
BstSCI	CCNGG	2 cut(s)	307, 337
BstSFI	CTRYAG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	286, 380, 625
BstV2I	GAAGAC	1 cut(s)	82
BsuRI	GGCC	5 cut(s)	120, 131, 225, 337, 445
BtgI	CCRYGG	1 cut(s)	331
BtrI	CACGTC	2 cut(s)	88, 235
BtsCI	GGATG	3 cut(s)	247, 403, 523
BtsIMutI	CAGTG	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	223, 373
CfoI	GCGC	2 cut(s)	140, 155
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	4 cut(s)	130, 223, 328, 335
CseI	GACGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	256, 289, 616
DdeI	CTNAG	1 cut(s)	363
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	3 cut(s)	230, 275, 607
DpnII	GATC	3 cut(s)	228, 273, 605
EciI	GGCGGA	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	126, 492
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	126, 492
EcoT38I	GRGCYC	1 cut(s)	344
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	126, 492
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	3 cut(s)	259, 292, 619
FaiI	YATR	4 cut(s)	257, 290, 438, 617
FatI	CATG	3 cut(s)	255, 288, 615
FauI	CCCGC	2 cut(s)	62, 214
Fnu4HI	GCNGC	7 cut(s)	66, 112, 219, 300, 369, 446, 639
FokI	GGATG	3 cut(s)	254, 410, 530
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	7 cut(s)	66, 112, 219, 300, 369, 446, 639
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	2 cut(s)	139, 154
GluI	GCNGC	7 cut(s)	66, 112, 219, 300, 369, 446, 639
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	5 cut(s)	120, 131, 225, 337, 445
HapII	CCGG	3 cut(s)	99, 308, 338
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	2 cut(s)	140, 155
Hin1I	GRCGYC	3 cut(s)	153, 180, 264
Hin1II	CATG	3 cut(s)	259, 292, 619
Hin6I	GCGC	2 cut(s)	138, 153
HinP1I	GCGC	2 cut(s)	138, 153
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	1 cut(s)	522
HpaII	CCGG	3 cut(s)	99, 308, 338
HphI	GGTGA	2 cut(s)	88, 115
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	148, 273
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	3 cut(s)	182, 197, 236
HpyAV	CCTTC	3 cut(s)	31, 199, 319
HpyCH4III	ACNGT	2 cut(s)	166, 332
HpyCH4IV	ACGT	4 cut(s)	87, 180, 234, 264
HpyCH4V	TGCA	4 cut(s)	425, 482, 552, 587
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 117, 137, 215, 488, 509
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	4 cut(s)	87, 180, 234, 264
Hsp92I	GRCGYC	3 cut(s)	153, 180, 264
Hsp92II	CATG	3 cut(s)	259, 292, 619
HspAI	GCGC	2 cut(s)	138, 153
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	228, 273, 605
Lsp1109I	GCAGC	3 cut(s)	286, 380, 625
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	4 cut(s)	87, 180, 234, 264
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	230, 275, 607
MboI	GATC	3 cut(s)	228, 273, 605
MboII	GAAGA	3 cut(s)	16, 82, 517
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	2 cut(s)	158, 377
Mly113I	GGCGCC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	9 cut(s)	38, 41, 44, 131, 142, 154, 238, 484, 622
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	3 cut(s)	99, 308, 338
MspR9I	CCNGG	2 cut(s)	309, 339
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	6 cut(s)	108, 117, 137, 215, 488, 509
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	2 cut(s)	309, 339
NdeII	GATC	3 cut(s)	228, 273, 605
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	3 cut(s)	259, 292, 619
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	522
PkrI	GCNGC	7 cut(s)	67, 113, 220, 301, 370, 447, 640
PluTI	GGCGCC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	4 cut(s)	130, 223, 328, 335
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	7 cut(s)	66, 112, 219, 300, 369, 446, 639
Sau3AI	GATC	3 cut(s)	228, 273, 605
Sau96I	GGNCC	4 cut(s)	130, 223, 328, 335
ScrFI	CCNGG	2 cut(s)	309, 339
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	407
SfoI	GGCGCC	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	158, 377
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	307, 337
StyI	CCWWGG	2 cut(s)	126, 492
TaaI	ACNGT	2 cut(s)	166, 332
TaiI	ACGT	4 cut(s)	90, 183, 237, 267
TaqI	TCGA	2 cut(s)	203, 231
TasI	AATT	2 cut(s)	158, 377
TauI	GCSGC	4 cut(s)	68, 114, 221, 448
TfiI	GAWTC	1 cut(s)	522
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	299, 368, 638
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	7 cut(s)	31, 82, 244, 329, 414, 425, 500
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	1 cut(s)	372
ZraI	GACGTC	2 cut(s)	181, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.