Rh6CG189600

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
30902549 .. 30904567
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG189600.1

Sequence Viewer

Length: 984 bp
ATGGCGGACCCCAACTTCTCCCTCCTCCTCCTCCCTCTCGCTCTCCTCCTCCTCCTCTACTTCATTGTCCGCCGCCGACCTACTACAGTCCCAATCAAGAACCGCCATATCTTCATCACCGGCGGTTCCAGTGGCATTGGCCTAGCCCTGGCCCACCTCGCCGCCTCTGAGGGTGCCAAAGTCTCCATCCTTGCGCTACTTGACGACAAGCTCGAGGAGGCCAAGAACTACATCCAACTCTCCACCGGCATCGACATCGCTGTCTTCGCTGCCGATGTCCGTGACTACGACGCAGTTTCGAAGGTTGTCGAAGTGGCGGGCCCGATCGATGTGTTGATCATCAACCAGGGAGTTTTTGTGGCTAAGGAGTTGGAGAAGCAGGGATTGGATGAGGTCAGGTTCGTGGTGGACGTCAATTTGATGGGTAGCTTCAACATGATCAAAGCTGCTTTGCCGGGAATGAAAGACAGGAAGGACCGTGGACCGGGTTCAATTGCTCTGATGTCGTCTCAGGCCGGTCAGGTTGGGATTTACGGCTACACGGCTTATTCCGCAAGCAAATTTGGGCTTCGGGGTTTGGCTGAAGCTCTGCAGCAAGAGGTCATTGTAGACGATATTCACATTTCGCTGATTTTCCCTCCGGCTACTGACACTCCTGGACTCACTAAAGAAACTAAGACGAGGCCGCAACTTACCAGCACTATAGTCGAAACCTCTGGTATAATGAAAGCCGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGTAACTTTGTAGGGCTTTTGTTGTCCATTGCCAGTGCTGGGTTGTCACCCCAGAGATCATTCATCATGGCATTTATGGAGGTGGTTGCTGGTGGTATAATACGGATAGTTGCTCTGGGATTGCAGTGGAATTGGTATACAAGTATACTCAAGTGGCATGGACAAAACAAAGGACCTAAAGTTCTTGCTGCATGA

Protein Analysis

327

Amino Acids

35.09

Weight (kDa)

8.49

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 36 - 226 2.7e-42 short chain dehydrogenase
KR PF08659 38 - 199 4.3e-09 KR domain
adh_short_C2 PF13561 44 - 248 2.7e-26 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 173
AccI GTMKAC 3 cut(s) 609, 926, 934
AciI CCGC 9 cut(s) 5, 70, 73, 103, 123, 162, 317, 552, 686
AcsI RAATTY 1 cut(s) 560
AcuI CTGAAG 1 cut(s) 603
AcyI GRCGYC 1 cut(s) 411
AfiI CCNNNNNNNGG 3 cut(s) 148, 484, 828
AgsI TTSAA 2 cut(s) 433, 492
AjnI CCWGG 3 cut(s) 147, 345, 655
AjuI GAANNNNNNNTTGG 4 cut(s) 368, 400, 737, 769
AloI GAACNNNNNNTCC 1 cut(s) 954
AluBI AGCT 5 cut(s) 211, 429, 446, 587, 752
AluI AGCT 5 cut(s) 211, 429, 446, 587, 752
Alw26I GTCTC 2 cut(s) 187, 513
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 6 cut(s) 139, 150, 219, 319, 513, 683
ApaI GGGCCC 1 cut(s) 323
ApeKI GCWGC 4 cut(s) 269, 446, 592, 977
ApoI RAATTY 1 cut(s) 560
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 7 cut(s) 7, 151, 319, 320, 475, 482, 962
AsuC2I CCSGG 2 cut(s) 456, 486
AsuHPI GGTGA 2 cut(s) 109, 828
AsuII TTCGAA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 4 cut(s) 7, 475, 482, 962
BaeGI GKGCMC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 4 cut(s) 256, 433, 604, 964
BccI CCATC 3 cut(s) 194, 415, 752
BceAI ACGGC 2 cut(s) 550, 558
BcgI CGANNNNNNTGC 6 cut(s) 238, 272, 688, 722, 722, 756
BciT130I CCWGG 3 cut(s) 149, 347, 657
BclI TGATCA 2 cut(s) 336, 438
BcnI CCSGG 2 cut(s) 456, 486
BcoDI GTCTC 2 cut(s) 187, 513
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 3 cut(s) 84, 590, 702
BisI GCNGC 7 cut(s) 73, 162, 270, 447, 593, 686, 978
BlsI GCNGC 7 cut(s) 74, 163, 271, 448, 594, 687, 979
Bme1390I CCNGG 5 cut(s) 149, 347, 456, 486, 657
Bme18I GGWCC 4 cut(s) 7, 475, 482, 962
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 7 cut(s) 7, 151, 319, 320, 475, 482, 962
BmiI GGNNCC 4 cut(s) 9, 127, 175, 321
BmrFI CCNGG 5 cut(s) 149, 347, 456, 486, 657
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 923
BpuMI CCSGG 2 cut(s) 456, 486
Bsa29I ATCGAT 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 4 cut(s) 147, 346, 478, 732
BsaXI ACNNNNNCTCC 4 cut(s) 342, 372, 637, 667
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 484, 828
Bse118I RCCGGY 3 cut(s) 119, 245, 515
Bse1I ACTGG 2 cut(s) 129, 822
Bse3DI GCAATG 1 cut(s) 816
BseBI CCWGG 3 cut(s) 149, 347, 657
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 4 cut(s) 147, 346, 478, 732
BseGI GGATG 4 cut(s) 186, 231, 394, 763
BseLI CCNNNNNNNGG 3 cut(s) 148, 484, 828
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 2 cut(s) 159, 524
BseNI ACTGG 2 cut(s) 129, 822
BseRI GAGGAG 8 cut(s) 14, 17, 20, 35, 38, 41, 44, 230
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 4 cut(s) 256, 433, 604, 964
BseYI CCCAGC 1 cut(s) 827
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 6 cut(s) 141, 152, 221, 321, 515, 685
BshNI GGYRCC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 327
BsiEI CGRYCG 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 6 cut(s) 120, 246, 455, 485, 516, 641
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 3 cut(s) 148, 484, 828
BsmAI GTCTC 2 cut(s) 187, 513
BsmBI CGTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 6 cut(s) 141, 152, 221, 321, 515, 685
BsoBI CYCGRG 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 299
Bsp120I GGGCCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 4 cut(s) 324, 336, 438, 845
BspACI CCGC 9 cut(s) 5, 70, 73, 103, 123, 162, 317, 552, 686
BspANI GGCC 6 cut(s) 141, 152, 221, 321, 515, 685
BspCNI CTCAG 2 cut(s) 160, 523
BspDI ATCGAT 1 cut(s) 327
BspLI GGNNCC 4 cut(s) 9, 127, 175, 321
BspMAI CTGCAG 1 cut(s) 594
BspT104I TTCGAA 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 816
BsrFI RCCGGY 3 cut(s) 119, 245, 515
BsrI ACTGG 2 cut(s) 129, 822
BssAI RCCGGY 3 cut(s) 119, 245, 515
BssECI CCNNGG 4 cut(s) 147, 346, 478, 732
BssMI GATC 4 cut(s) 324, 336, 438, 845
BssNAI GTATAC 2 cut(s) 927, 935
BssNI GRCGYC 1 cut(s) 411
Bst1107I GTATAC 2 cut(s) 927, 935
Bst2UI CCWGG 3 cut(s) 149, 347, 657
Bst4CI ACNGT 2 cut(s) 88, 479
BstACI GRCGYC 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 319, 556
BstDEI CTNAG 4 cut(s) 168, 363, 510, 675
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 4 cut(s) 186, 231, 394, 763
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 4 cut(s) 327, 339, 441, 848
BstMAI GTCTC 2 cut(s) 187, 513
BstMBI GATC 4 cut(s) 324, 336, 438, 845
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 4 cut(s) 158, 266, 551, 749
BstNI CCWGG 3 cut(s) 149, 347, 657
BstSCI CCNGG 5 cut(s) 147, 345, 454, 484, 655
BstSFI CTRYAG 3 cut(s) 84, 590, 702
BstSLI GKGCMC 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 256, 433, 604, 964
BstV2I GAAGAC 1 cut(s) 256
BstZ17I GTATAC 2 cut(s) 927, 935
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 6 cut(s) 141, 152, 221, 321, 515, 685
BsuTUI ATCGAT 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 478
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 186, 231, 394, 763
BtsI GCAGTG 1 cut(s) 920
BtsIMutI CAGTG 3 cut(s) 136, 829, 920
Cac8I GCNNGC 2 cut(s) 319, 556
CfoI GCGC 1 cut(s) 196
Cfr10I RCCGGY 3 cut(s) 119, 245, 515
Cfr13I GGNCC 7 cut(s) 7, 151, 319, 320, 475, 482, 962
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 1 cut(s) 299
CviAII CATG 4 cut(s) 436, 856, 947, 981
DdeI CTNAG 4 cut(s) 168, 363, 510, 675
DpnI GATC 4 cut(s) 326, 338, 440, 847
DpnII GATC 4 cut(s) 324, 336, 438, 845
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EciI GGCGGA 2 cut(s) 20, 59
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 4 cut(s) 7, 475, 482, 962
Eco57I CTGAAG 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 962
EcoRII CCWGG 3 cut(s) 147, 345, 655
EcoT38I GRGCYC 1 cut(s) 323
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 4 cut(s) 439, 859, 950, 984
FaqI GGGAC 1 cut(s) 74
FatI CATG 4 cut(s) 435, 855, 946, 980
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 2 cut(s) 336, 438
FblI GTMKAC 3 cut(s) 609, 926, 934
Fnu4HI GCNGC 7 cut(s) 73, 162, 270, 447, 593, 686, 978
FokI GGATG 4 cut(s) 173, 218, 401, 770
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 7 cut(s) 73, 162, 270, 447, 593, 686, 978
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 195
GluI GCNGC 7 cut(s) 73, 162, 270, 447, 593, 686, 978
GsaI CCCAGC 1 cut(s) 831
HaeIII GGCC 6 cut(s) 141, 152, 221, 321, 515, 685
HapII CCGG 6 cut(s) 120, 246, 455, 485, 516, 641
HgaI GACGC 1 cut(s) 299
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 4 cut(s) 439, 859, 950, 984
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 2 cut(s) 660, 762
HpaII CCGG 6 cut(s) 120, 246, 455, 485, 516, 641
HphI GGTGA 2 cut(s) 109, 828
Hpy166II GTNNAC 5 cut(s) 409, 482, 610, 927, 935
Hpy188I TCNGA 2 cut(s) 169, 501
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 5 cut(s) 409, 482, 610, 927, 935
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 295, 466
HpyCH4III ACNGT 2 cut(s) 88, 479
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 3 cut(s) 592, 913, 980
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 266, 551, 749
HpyF3I CTNAG 4 cut(s) 168, 363, 510, 675
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 4 cut(s) 439, 859, 950, 984
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 2 cut(s) 336, 438
Kzo9I GATC 4 cut(s) 324, 336, 438, 845
Lsp1109I GCAGC 4 cut(s) 256, 433, 604, 964
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 3 cut(s) 281, 791, 834
MalI GATC 4 cut(s) 326, 338, 440, 847
MboI GATC 4 cut(s) 324, 336, 438, 845
MboII GAAGA 3 cut(s) 103, 256, 757
MfeI CAATTG 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 4 cut(s) 415, 492, 560, 919
MlyI GAGTC 1 cut(s) 654
MmeI TCCRAC 2 cut(s) 259, 351
MspI CCGG 6 cut(s) 120, 246, 455, 485, 516, 641
MspR9I CCNGG 5 cut(s) 149, 347, 456, 486, 657
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 3 cut(s) 149, 347, 657
MwoI GCNNNNNNNGC 4 cut(s) 158, 266, 551, 749
NciI CCSGG 2 cut(s) 456, 486
NdeII GATC 4 cut(s) 324, 336, 438, 845
NlaIII CATG 4 cut(s) 439, 859, 950, 984
NlaIV GGNNCC 4 cut(s) 9, 127, 175, 321
NmeAIII GCCGAG 1 cut(s) 757
NmuCI GTSAC 2 cut(s) 281, 834
NspV TTCGAA 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 212
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 408
PfeI GAWTC 1 cut(s) 762
PfoI TCCNGGA 1 cut(s) 655
PkrI GCNGC 7 cut(s) 74, 163, 271, 448, 594, 687, 979
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
PpuMI RGGWCCY 1 cut(s) 962
Psp5II RGGWCCY 1 cut(s) 962
Psp6I CCWGG 3 cut(s) 147, 345, 655
PspFI CCCAGC 1 cut(s) 827
PspGI CCWGG 3 cut(s) 147, 345, 655
PspN4I GGNNCC 4 cut(s) 9, 127, 175, 321
PspOMI GGGCCC 1 cut(s) 319
PspPI GGNCC 7 cut(s) 7, 151, 319, 320, 475, 482, 962
PspPPI RGGWCCY 1 cut(s) 962
PspXI VCTCGAGB 1 cut(s) 212
PstI CTGCAG 1 cut(s) 594
PvuI CGATCG 1 cut(s) 327
SatI GCNGC 7 cut(s) 73, 162, 270, 447, 593, 686, 978
Sau3AI GATC 4 cut(s) 324, 336, 438, 845
Sau96I GGNCC 7 cut(s) 7, 151, 319, 320, 475, 482, 962
SchI GAGTC 1 cut(s) 654
ScrFI CCNGG 5 cut(s) 149, 347, 456, 486, 657
SduI GDGCHC 1 cut(s) 323
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 3 cut(s) 84, 590, 702
Sfr274I CTCGAG 1 cut(s) 212
SfuI TTCGAA 1 cut(s) 299
SgrAI CRCCGGYG 1 cut(s) 119
SinI GGWCC 4 cut(s) 7, 475, 482, 962
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 212, 938
SmoI CTYRAG 2 cut(s) 212, 938
Sse9I AATT 4 cut(s) 415, 492, 560, 919
SsiI CCGC 9 cut(s) 5, 70, 73, 103, 123, 162, 317, 552, 686
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 5 cut(s) 147, 345, 454, 484, 655
TaaI ACNGT 2 cut(s) 88, 479
TaiI ACGT 1 cut(s) 414
TaqI TCGA 6 cut(s) 213, 252, 299, 309, 327, 708
TasI AATT 4 cut(s) 415, 492, 560, 919
TauI GCSGC 3 cut(s) 75, 164, 688
TfiI GAWTC 1 cut(s) 762
TscAI CASTG 3 cut(s) 136, 829, 920
TseFI GTSAC 2 cut(s) 281, 834
TseI GCWGC 4 cut(s) 269, 446, 592, 977
Tsp45I GTSAC 2 cut(s) 281, 834
TspDTI ATGAA 5 cut(s) 52, 103, 476, 740, 841
TspGWI ACGGA 2 cut(s) 269, 907
TspRI CASTG 3 cut(s) 136, 829, 920
VpaK11BI GGWCC 4 cut(s) 7, 475, 482, 962
XapI RAATTY 1 cut(s) 560
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 3 cut(s) 609, 926, 934
XspI CTAG 1 cut(s) 143
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.