RchiOBHm_Chr4g0417501

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
42796893 .. 42802441
5549 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38758

Sequence Viewer

Length: 981 bp
ATGGCTGACCCCAACCTCTCCTTGCTCTCTCTCCTCCTCCTCCTCCCTCTCGCTCTCCTCCTCCTCCTCTACCTCATCGTCCGCCCCCGCCCCGCCACTGTCCCAATCAAGAACCGCCACGTCTTCATCACCGGTGGATCCAGCGGCATCGGCCTCGCCCTGGCCCACCGTGCTGCCTCCGAGGGCGCCAGAGTCTCCATCCTTGCACGCTCTCTCGACAAGCTTGAGGAGGCCAAGAACTACATCCAGCTCTCCACTGGCATAGACGTCGCTGTCTTTGTGGCCGACGTTCGTGACTATGACGCCGTTTCCAAGGCGGTCGAGGCGGCGGGCCCGATTGACGTGTTAGTAGTCAACCAGGGAGTGTTTGTCCCCGGGGAGTTGGAGAAGCAGGGATTGGATGAGGTCAGGTTCATGGTGGACATCAATTTGATCGGTAGCTTTAACGTGATCAAAGCTGCCTTGCCGGGAATGAAGGACAGGAAGGACCGCGGACCGGGTTCGATTGCTCTGATGTCGTCGCAGGCTGGTCAGGTTGGGATTTACGGCTACACGGCTTATTCCGCTAGCAAATTTGGGCTTCGGGGTTTGGCTGAAGCTCTGCAGCAAGAGGTCATTGCGGACGACATTCACGTTTCACTAATTTTCCCTCCGGATACTGACACTCCTGGACTCACTGAAGAAACTAAGAAGAGGCCGCAGCTGACCAGCATTATCGCGGAATCCTCTGGTGCAATGAAAGCTGAGGAAGTTGCTAAGAAAGCTTTGGATGGAATCAAGTCTGCGTCTTTTATTGTACCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGCCGGGTTGTCGCCTCAGAGATCGTTCATTATGGCATTTGTGGAGGTGGTTGCTGCTGGTATAATACGTATTGCTGCCCTGGGTTTTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGTACCTGA

Protein Analysis

326

Amino Acids

34.88

Weight (kDa)

6.54

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 40 - 231 4.3e-44 short chain dehydrogenase
KR PF08659 41 - 203 1.3e-09 KR domain
adh_short_C2 PF13561 48 - 252 2.4e-27 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AatII GACGTC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 185
AccI GTMKAC 2 cut(s) 938, 946
AccII CGCG 2 cut(s) 492, 719
AccIII TCCGGA 1 cut(s) 652
AclWI GGATC 2 cut(s) 132, 145
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 2 cut(s) 615, 699
AcyI GRCGYC 3 cut(s) 186, 267, 303
AfaI GTAC 2 cut(s) 798, 976
AfiI CCNNNNNNNGG 3 cut(s) 160, 496, 840
AflIII ACRYGT 1 cut(s) 342
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 1 cut(s) 812
AjiI CACGTC 2 cut(s) 121, 343
AjnI CCWGG 4 cut(s) 159, 357, 667, 915
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 8 cut(s) 223, 250, 441, 458, 599, 703, 743, 764
AluI AGCT 8 cut(s) 223, 250, 441, 458, 599, 703, 743, 764
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 2 cut(s) 132, 145
Ama87I CYCGRG 1 cut(s) 374
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 6 cut(s) 151, 162, 231, 282, 331, 695
ApaI GGGCCC 1 cut(s) 335
ApeKI GCWGC 6 cut(s) 173, 458, 604, 700, 890, 911
ApoI RAATTY 1 cut(s) 572
AsiGI ACCGGT 1 cut(s) 131
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 5 cut(s) 163, 331, 332, 487, 494
AsuC2I CCSGG 5 cut(s) 375, 376, 468, 498, 841
AsuHPI GGTGA 1 cut(s) 121
AsuNHI GCTAGC 1 cut(s) 566
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 2 cut(s) 487, 494
BaeGI GKGCMC 1 cut(s) 335
BaeI ACNNNNGTAYC 1 cut(s) 958
BamHI GGATCC 1 cut(s) 137
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 6 cut(s) 160, 445, 616, 712, 877, 898
BccI CCATC 2 cut(s) 206, 764
BceAI ACGGC 3 cut(s) 290, 562, 570
BcgI CGANNNNNNTGC 4 cut(s) 136, 170, 250, 284
BciT130I CCWGG 4 cut(s) 161, 359, 669, 917
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 5 cut(s) 375, 376, 468, 498, 841
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 602
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 9 cut(s) 145, 174, 327, 459, 605, 698, 701, 891, 912
BlsI GCNGC 9 cut(s) 146, 175, 328, 460, 606, 699, 702, 892, 913
Bme1390I CCNGG 9 cut(s) 161, 359, 375, 376, 468, 498, 669, 841, 917
Bme18I GGWCC 2 cut(s) 487, 494
BmeT110I CYCGRG 1 cut(s) 374
BmgBI CACGTC 2 cut(s) 121, 343
BmgT120I GGNCC 5 cut(s) 163, 331, 332, 487, 494
BmiI GGNNCC 3 cut(s) 139, 187, 333
BmrFI CCNGG 9 cut(s) 161, 359, 375, 376, 468, 498, 669, 841, 917
BmsI GCATC 1 cut(s) 156
BmtI GCTAGC 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 5 cut(s) 375, 376, 468, 498, 841
BsaAI YACGTR 1 cut(s) 905
BsaHI GRCGYC 3 cut(s) 186, 267, 303
BsaWI WCCGGW 2 cut(s) 131, 652
BsaXI ACNNNNNCTCC 4 cut(s) 354, 384, 649, 679
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 496, 840
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 2 cut(s) 615, 741
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 4 cut(s) 161, 359, 669, 917
BseGI GGATG 4 cut(s) 198, 243, 406, 775
BseLI CCNNNNNNNGG 3 cut(s) 160, 496, 840
BseMI GCAATG 2 cut(s) 615, 741
BseMII CTCAG 2 cut(s) 735, 866
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 9 cut(s) 23, 26, 29, 32, 47, 50, 53, 56, 242
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 6 cut(s) 160, 445, 616, 712, 877, 898
Bsh1236I CGCG 2 cut(s) 492, 719
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 6 cut(s) 153, 164, 233, 284, 333, 697
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 6 cut(s) 132, 375, 467, 497, 653, 840
BslFI GGGAC 2 cut(s) 86, 356
BslI CCNNNNNNNGG 3 cut(s) 160, 496, 840
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 86, 356
BsnI GGCC 6 cut(s) 153, 164, 233, 284, 333, 697
BsoBI CYCGRG 1 cut(s) 374
Bsp120I GGGCCC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 4 cut(s) 137, 432, 450, 857
BspANI GGCC 6 cut(s) 153, 164, 233, 284, 333, 697
BspCNI CTCAG 2 cut(s) 736, 865
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 2 cut(s) 492, 719
BspLI GGNNCC 3 cut(s) 139, 187, 333
BspMAI CTGCAG 1 cut(s) 606
BspOI GCTAGC 1 cut(s) 570
BspPI GGATC 2 cut(s) 132, 145
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 615, 741
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 131
BssMI GATC 4 cut(s) 137, 432, 450, 857
BssNAI GTATAC 2 cut(s) 939, 947
BssNI GRCGYC 3 cut(s) 186, 267, 303
BssT1I CCWWGG 1 cut(s) 312
Bst1107I GTATAC 2 cut(s) 939, 947
Bst2UI CCWGG 4 cut(s) 161, 359, 669, 917
Bst4CI ACNGT 2 cut(s) 100, 170
Bst6I CTCTTC 1 cut(s) 686
BstACI GRCGYC 3 cut(s) 186, 267, 303
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 4 cut(s) 208, 331, 525, 568
BstDEI CTNAG 4 cut(s) 687, 744, 756, 852
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 4 cut(s) 198, 243, 406, 775
BstFNI CGCG 2 cut(s) 492, 719
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 4 cut(s) 140, 435, 453, 860
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 4 cut(s) 137, 432, 450, 857
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 6 cut(s) 150, 170, 323, 563, 740, 761
BstNI CCWGG 4 cut(s) 161, 359, 669, 917
BstSCI CCNGG 9 cut(s) 159, 357, 373, 374, 466, 496, 667, 839, 915
BstSFI CTRYAG 1 cut(s) 602
BstSLI GKGCMC 1 cut(s) 335
BstSNI TACGTA 1 cut(s) 905
BstUI CGCG 2 cut(s) 492, 719
BstV1I GCAGC 6 cut(s) 160, 445, 616, 712, 877, 898
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BstZ17I GTATAC 2 cut(s) 939, 947
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 6 cut(s) 153, 164, 233, 284, 333, 697
BtgI CCRYGG 1 cut(s) 490
BtrI CACGTC 2 cut(s) 121, 343
BtsCI GGATG 4 cut(s) 198, 243, 406, 775
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 5 cut(s) 96, 255, 675, 834, 932
Cac8I GCNNGC 4 cut(s) 208, 331, 525, 568
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 5 cut(s) 163, 331, 332, 487, 494
Cfr42I CCGCGG 1 cut(s) 493
Cfr9I CCCGGG 1 cut(s) 374
CpoI CGGWCCG 1 cut(s) 494
CseI GACGC 2 cut(s) 311, 774
Csp6I GTAC 2 cut(s) 797, 975
CspAI ACCGGT 1 cut(s) 131
CspI CGGWCCG 1 cut(s) 494
CviAII CATG 2 cut(s) 415, 959
CviQI GTAC 2 cut(s) 797, 975
DdeI CTNAG 4 cut(s) 687, 744, 756, 852
DinI GGCGCC 1 cut(s) 187
DpnI GATC 4 cut(s) 139, 434, 452, 859
DpnII GATC 4 cut(s) 137, 432, 450, 857
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
EciI GGCGGA 1 cut(s) 71
Eco105I TACGTA 1 cut(s) 905
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 487, 494
Eco57I CTGAAG 2 cut(s) 615, 699
Eco88I CYCGRG 1 cut(s) 374
EcoRII CCWGG 4 cut(s) 159, 357, 667, 915
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 335
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 2 cut(s) 418, 962
FaiI YATR 8 cut(s) 263, 300, 416, 869, 899, 939, 947, 960
FaqI GGGAC 2 cut(s) 86, 356
FatI CATG 2 cut(s) 414, 958
FauI CCCGC 3 cut(s) 95, 100, 322
FbaI TGATCA 1 cut(s) 450
FblI GTMKAC 2 cut(s) 938, 946
Fnu4HI GCNGC 9 cut(s) 145, 174, 327, 459, 605, 698, 701, 891, 912
FokI GGATG 4 cut(s) 185, 230, 413, 782
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 9 cut(s) 145, 174, 327, 459, 605, 698, 701, 891, 912
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 187
GluI GCNGC 9 cut(s) 145, 174, 327, 459, 605, 698, 701, 891, 912
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 6 cut(s) 153, 164, 233, 284, 333, 697
HapII CCGG 6 cut(s) 132, 375, 467, 497, 653, 840
HgaI GACGC 2 cut(s) 311, 774
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 3 cut(s) 186, 267, 303
Hin1II CATG 2 cut(s) 418, 962
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 221, 762
HinfI GANTC 4 cut(s) 192, 672, 722, 774
HpaII CCGG 6 cut(s) 132, 375, 467, 497, 653, 840
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 4 cut(s) 355, 421, 939, 947
Hpy188I TCNGA 3 cut(s) 181, 513, 855
Hpy188III TCNNGA 4 cut(s) 109, 215, 293, 653
Hpy8I GTNNAC 4 cut(s) 355, 421, 939, 947
Hpy99I CGWCG 3 cut(s) 272, 290, 523
HpyAV CCTTC 3 cut(s) 469, 478, 806
HpyCH4III ACNGT 2 cut(s) 100, 170
HpyCH4IV ACGT 7 cut(s) 120, 267, 288, 342, 447, 633, 904
HpyCH4V TGCA 4 cut(s) 206, 604, 734, 804
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 170, 323, 563, 740, 761
HpyF3I CTNAG 4 cut(s) 687, 744, 756, 852
HpySE526I ACGT 7 cut(s) 120, 267, 288, 342, 447, 633, 904
Hsp92I GRCGYC 3 cut(s) 186, 267, 303
Hsp92II CATG 2 cut(s) 418, 962
HspAI GCGC 1 cut(s) 186
KasI GGCGCC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 450
KspI CCGCGG 1 cut(s) 493
Kzo9I GATC 4 cut(s) 137, 432, 450, 857
Lsp1109I GCAGC 6 cut(s) 160, 445, 616, 712, 877, 898
LweI GCATC 1 cut(s) 156
MaeI CTAG 1 cut(s) 567
MaeII ACGT 7 cut(s) 120, 267, 288, 342, 447, 633, 904
MaeIII GTNAC 1 cut(s) 293
MalI GATC 4 cut(s) 139, 434, 452, 859
MboI GATC 4 cut(s) 137, 432, 450, 857
MboII GAAGA 3 cut(s) 115, 692, 703
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 4 cut(s) 427, 572, 642, 931
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 2 cut(s) 201, 666
MmeI TCCRAC 1 cut(s) 363
MroI TCCGGA 1 cut(s) 652
MseI TTAA 1 cut(s) 444
MspA1I CMGCKG 3 cut(s) 144, 492, 703
MspI CCGG 6 cut(s) 132, 375, 467, 497, 653, 840
MspR9I CCNGG 9 cut(s) 161, 359, 375, 376, 468, 498, 669, 841, 917
MvaI CCWGG 4 cut(s) 161, 359, 669, 917
MvnI CGCG 2 cut(s) 492, 719
MwoI GCNNNNNNNGC 6 cut(s) 150, 170, 323, 563, 740, 761
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 5 cut(s) 375, 376, 468, 498, 841
NdeII GATC 4 cut(s) 137, 432, 450, 857
NheI GCTAGC 1 cut(s) 566
NlaIII CATG 2 cut(s) 418, 962
NlaIV GGNNCC 3 cut(s) 139, 187, 333
NmuCI GTSAC 1 cut(s) 293
PasI CCCWGGG 1 cut(s) 916
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PfeI GAWTC 2 cut(s) 722, 774
PfoI TCCNGGA 1 cut(s) 667
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 9 cut(s) 146, 175, 328, 460, 606, 699, 702, 892, 913
PleI GAGTC 2 cut(s) 200, 666
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 2 cut(s) 200, 666
Ppu21I YACGTR 1 cut(s) 905
Psp6I CCWGG 4 cut(s) 159, 357, 667, 915
PspGI CCWGG 4 cut(s) 159, 357, 667, 915
PspN4I GGNNCC 3 cut(s) 139, 187, 333
PspOMI GGGCCC 1 cut(s) 331
PspPI GGNCC 5 cut(s) 163, 331, 332, 487, 494
PstI CTGCAG 1 cut(s) 606
PsuI RGATCY 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 703
RsaI GTAC 2 cut(s) 798, 976
RsaNI GTAC 2 cut(s) 797, 975
Rsr2I CGGWCCG 1 cut(s) 494
RsrII CGGWCCG 1 cut(s) 494
SacII CCGCGG 1 cut(s) 493
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 9 cut(s) 145, 174, 327, 459, 605, 698, 701, 891, 912
Sau3AI GATC 4 cut(s) 137, 432, 450, 857
Sau96I GGNCC 5 cut(s) 163, 331, 332, 487, 494
SchI GAGTC 2 cut(s) 201, 666
ScrFI CCNGG 9 cut(s) 161, 359, 375, 376, 468, 498, 669, 841, 917
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 602
SfoI GGCGCC 1 cut(s) 187
Sfr303I CCGCGG 1 cut(s) 493
SgrAI CRCCGGYG 1 cut(s) 131
SgrBI CCGCGG 1 cut(s) 493
SinI GGWCC 2 cut(s) 487, 494
SmaI CCCGGG 1 cut(s) 376
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SnaBI TACGTA 1 cut(s) 905
Sse9I AATT 4 cut(s) 427, 572, 642, 931
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 1 cut(s) 567
StyD4I CCNGG 9 cut(s) 159, 357, 373, 374, 466, 496, 667, 839, 915
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 100, 170
TaiI ACGT 7 cut(s) 123, 270, 291, 345, 450, 636, 907
TaqI TCGA 3 cut(s) 216, 321, 503
TasI AATT 4 cut(s) 427, 572, 642, 931
TauI GCSGC 3 cut(s) 147, 329, 700
TfiI GAWTC 2 cut(s) 722, 774
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 5 cut(s) 103, 262, 682, 841, 932
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 6 cut(s) 173, 458, 604, 700, 890, 911
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 5 cut(s) 115, 403, 488, 752, 853
TspMI CCCGGG 1 cut(s) 374
TspRI CASTG 5 cut(s) 103, 262, 682, 841, 932
VpaK11BI GGWCC 2 cut(s) 487, 494
XapI RAATTY 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XmaI CCCGGG 1 cut(s) 374
XmiI GTMKAC 2 cut(s) 938, 946
XspI CTAG 1 cut(s) 567
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.