Rh7DG358900

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
47799111 .. 47801142
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG358900.1

Sequence Viewer

Length: 987 bp
ATGGCCGACCCCAACCTCTCCTTGCTCTCCCTCCTTCTCCTCCTCCTCCCTCTCGCTCTACTCCTCCTCCTCCTCTACCTCATCGTCCGCCCCCGCCCCGCCACTGTCCCAATCAAGAACCGCCACGTCTTCATCACCGGTGGATCCAGCGGCATCGGCCTCGCCCTGGCCCACCGTGCCGCCTCCGAGGGTGCCAGAGTCTCCATCCTTGCACGCTCCCTTGACAAGCTCGAGGAGGCCAAGAACTACATCCAGCTCTCCACCGGCATCGATGTCGCCGTCTTTGCTGCCGACGTTCGCAACTATGATGCTGTTTCCAAGGCGGTCGAGGCGGCTGGCCCGATCGATGTGTTGGTAGTCAACCAGGGAGTTTTTATCCCTGGGGAGTTGGAGAAGCAGGGATTGGATGAGGTCAGGTTCATGGTGGACGTCAATTTGATCGGTAGCTTCAACATGATCAAAGCTGCTTTGCCAGGAATGAAGGACAGGAAGGACCGTGGACCGGGTTCGATTGCTCTGATGTCGTCGCAGGCCGGTCAGGTTGGGATTTACGGCTACACGGCTTATTCCGCAAGCAAATTTGGGCTTCGAGGTTTGGCTGAAGCTCTGCAGCAAGAGGTCATTACAGACGACATTCACGTTTCACTAATTTTCCCTCCGGATACTGACACTCCTGGACTCACTGAAGAAACTAAGAAGAGGCCGCAGCTGACCAGCATTATCGCAGAATCCTCTGGTGCAATGAAAGCTGAGGAAGTTGCTAAGAAGGCTTTGGATGGAATCAAGTCTGCGTCTTTTATTGTACCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGCCGGGTTGTCGCCTCAGAGATCGTTCATTATGGCATTTGTGGAGGTGGTTGCTGCTGGTATAATACGTATTGCTGCCCTGGGTTTTCAGTGGAATTGGTACACAAGTATACACAAGTGGCATGGACAAAACAAAAGTACCTGA

Protein Analysis

328

Amino Acids

35.14

Weight (kDa)

6.98

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 42 - 233 1.9e-44 short chain dehydrogenase
KR PF08659 43 - 205 1.7e-10 KR domain
adh_short_C2 PF13561 50 - 254 2.2e-27 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 952
AccIII TCCGGA 1 cut(s) 658
AclWI GGATC 2 cut(s) 138, 151
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 2 cut(s) 621, 705
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 3 cut(s) 804, 944, 982
AfiI CCNNNNNNNGG 3 cut(s) 166, 502, 846
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 2 cut(s) 451, 818
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 6 cut(s) 165, 363, 379, 472, 673, 921
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 7 cut(s) 229, 256, 447, 464, 605, 709, 749
AluI AGCT 7 cut(s) 229, 256, 447, 464, 605, 709, 749
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 2 cut(s) 138, 151
Ama87I CYCGRG 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 658
AoxI GGCC 7 cut(s) 3, 157, 168, 237, 337, 531, 701
ApeKI GCWGC 6 cut(s) 287, 464, 610, 706, 896, 917
ApoI RAATTY 1 cut(s) 578
AsiGI ACCGGT 1 cut(s) 137
AspS9I GGNCC 4 cut(s) 169, 338, 493, 500
AsuC2I CCSGG 2 cut(s) 504, 847
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 493, 500
BaeI ACNNNNGTAYC 3 cut(s) 934, 964, 967
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 6 cut(s) 274, 451, 622, 718, 883, 904
BccI CCATC 2 cut(s) 212, 770
BceAI ACGGC 3 cut(s) 263, 568, 576
BcgI CGANNNNNNTGC 4 cut(s) 142, 176, 256, 290
BciT130I CCWGG 6 cut(s) 167, 365, 381, 474, 675, 923
BciVI GTATCC 1 cut(s) 655
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 2 cut(s) 504, 847
BcoDI GTCTC 1 cut(s) 205
BfmI CTRYAG 1 cut(s) 608
BfuI GTATCC 1 cut(s) 655
Bme1390I CCNGG 8 cut(s) 167, 365, 381, 474, 504, 675, 847, 923
Bme18I GGWCC 2 cut(s) 493, 500
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 4 cut(s) 169, 338, 493, 500
BmiI GGNNCC 2 cut(s) 145, 193
BmrFI CCNGG 8 cut(s) 167, 365, 381, 474, 504, 675, 847, 923
BmsI GCATC 3 cut(s) 162, 276, 298
BpiI GAAGAC 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 750
BpuMI CCSGG 2 cut(s) 504, 847
Bsa29I ATCGAT 2 cut(s) 270, 345
BsaAI YACGTR 1 cut(s) 911
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 9 cut(s) 165, 186, 318, 364, 379, 380, 496, 921, 922
BsaWI WCCGGW 2 cut(s) 137, 658
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 655, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 502, 846
Bse118I RCCGGY 3 cut(s) 137, 263, 533
Bse3DI GCAATG 1 cut(s) 747
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 6 cut(s) 167, 365, 381, 474, 675, 923
BseCI ATCGAT 2 cut(s) 270, 345
BseDI CCNNGG 9 cut(s) 165, 186, 318, 364, 379, 380, 496, 921, 922
BseGI GGATG 4 cut(s) 204, 249, 412, 781
BseLI CCNNNNNNNGG 3 cut(s) 166, 502, 846
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 2 cut(s) 741, 872
BseRI GAGGAG 8 cut(s) 29, 32, 35, 53, 56, 59, 62, 248
BseXI GCAGC 6 cut(s) 274, 451, 622, 718, 883, 904
Bsh1285I CGRYCG 2 cut(s) 327, 345
BshFI GGCC 7 cut(s) 5, 159, 170, 239, 339, 533, 703
BshNI GGYRCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 137
BshVI ATCGAT 2 cut(s) 270, 345
BsiEI CGRYCG 2 cut(s) 327, 345
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 6 cut(s) 138, 264, 503, 534, 659, 846
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 3 cut(s) 166, 502, 846
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 7 cut(s) 5, 159, 170, 239, 339, 533, 703
BsoBI CYCGRG 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 5 cut(s) 143, 342, 438, 456, 863
BspANI GGCC 7 cut(s) 5, 159, 170, 239, 339, 533, 703
BspCNI CTCAG 2 cut(s) 742, 871
BspDI ATCGAT 2 cut(s) 270, 345
BspEI TCCGGA 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 145, 193
BspMAI CTGCAG 1 cut(s) 612
BspPI GGATC 2 cut(s) 138, 151
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 747
BsrFI RCCGGY 3 cut(s) 137, 263, 533
BssAI RCCGGY 3 cut(s) 137, 263, 533
BssECI CCNNGG 9 cut(s) 165, 186, 318, 364, 379, 380, 496, 921, 922
BssMI GATC 5 cut(s) 143, 342, 438, 456, 863
BssNAI GTATAC 1 cut(s) 953
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 318
Bst1107I GTATAC 1 cut(s) 953
Bst2UI CCWGG 6 cut(s) 167, 365, 381, 474, 675, 923
Bst4CI ACNGT 3 cut(s) 106, 176, 497
Bst6I CTCTTC 1 cut(s) 692
BstACI GRCGYC 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 911
BstC8I GCNNGC 4 cut(s) 214, 337, 531, 574
BstDEI CTNAG 4 cut(s) 693, 750, 762, 858
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 4 cut(s) 204, 249, 412, 781
BstKTI GATC 5 cut(s) 146, 345, 441, 459, 866
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 5 cut(s) 143, 342, 438, 456, 863
BstMCI CGRYCG 2 cut(s) 327, 345
BstMWI GCNNNNNNNGC 7 cut(s) 156, 176, 284, 329, 569, 746, 767
BstNI CCWGG 6 cut(s) 167, 365, 381, 474, 675, 923
BstSCI CCNGG 8 cut(s) 165, 363, 379, 472, 502, 673, 845, 921
BstSFI CTRYAG 1 cut(s) 608
BstSNI TACGTA 1 cut(s) 911
BstV1I GCAGC 6 cut(s) 274, 451, 622, 718, 883, 904
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BstZ17I GTATAC 1 cut(s) 953
Bsu15I ATCGAT 2 cut(s) 270, 345
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 7 cut(s) 5, 159, 170, 239, 339, 533, 703
BsuTUI ATCGAT 2 cut(s) 270, 345
BtgI CCRYGG 1 cut(s) 496
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 4 cut(s) 204, 249, 412, 781
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 4 cut(s) 102, 681, 840, 938
Cac8I GCNNGC 4 cut(s) 214, 337, 531, 574
Cfr10I RCCGGY 3 cut(s) 137, 263, 533
Cfr13I GGNCC 4 cut(s) 169, 338, 493, 500
ClaI ATCGAT 2 cut(s) 270, 345
CseI GACGC 1 cut(s) 780
Csp6I GTAC 3 cut(s) 803, 943, 981
CspAI ACCGGT 1 cut(s) 137
CviAII CATG 3 cut(s) 421, 454, 965
CviQI GTAC 3 cut(s) 803, 943, 981
DdeI CTNAG 4 cut(s) 693, 750, 762, 858
DpnI GATC 5 cut(s) 145, 344, 440, 458, 865
DpnII GATC 5 cut(s) 143, 342, 438, 456, 863
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
EciI GGCGGA 1 cut(s) 77
Eco105I TACGTA 1 cut(s) 911
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 493, 500
Eco57I CTGAAG 2 cut(s) 621, 705
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 6 cut(s) 165, 363, 379, 472, 673, 921
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 424, 457, 968
FaiI YATR 7 cut(s) 306, 422, 455, 875, 905, 953, 966
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 420, 453, 964
FauI CCCGC 2 cut(s) 101, 106
FbaI TGATCA 1 cut(s) 456
FblI GTMKAC 1 cut(s) 952
FokI GGATG 4 cut(s) 191, 236, 419, 788
HaeIII GGCC 7 cut(s) 5, 159, 170, 239, 339, 533, 703
HapII CCGG 6 cut(s) 138, 264, 503, 534, 659, 846
HgaI GACGC 1 cut(s) 780
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 3 cut(s) 424, 457, 968
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 4 cut(s) 198, 678, 728, 780
HpaII CCGG 6 cut(s) 138, 264, 503, 534, 659, 846
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 5 cut(s) 361, 427, 500, 945, 953
Hpy188I TCNGA 3 cut(s) 187, 519, 861
Hpy188III TCNNGA 2 cut(s) 115, 659
Hpy8I GTNNAC 5 cut(s) 361, 427, 500, 945, 953
Hpy99I CGWCG 2 cut(s) 296, 529
HpyAV CCTTC 5 cut(s) 44, 475, 484, 760, 812
HpyCH4III ACNGT 3 cut(s) 106, 176, 497
HpyCH4IV ACGT 5 cut(s) 126, 294, 429, 639, 910
HpyCH4V TGCA 4 cut(s) 212, 610, 740, 810
HpyF10VI GCNNNNNNNGC 7 cut(s) 156, 176, 284, 329, 569, 746, 767
HpyF3I CTNAG 4 cut(s) 693, 750, 762, 858
HpySE526I ACGT 5 cut(s) 126, 294, 429, 639, 910
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 3 cut(s) 424, 457, 968
Kpn2I TCCGGA 1 cut(s) 658
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 5 cut(s) 143, 342, 438, 456, 863
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 6 cut(s) 274, 451, 622, 718, 883, 904
LweI GCATC 3 cut(s) 162, 276, 298
MaeII ACGT 5 cut(s) 126, 294, 429, 639, 910
MalI GATC 5 cut(s) 145, 344, 440, 458, 865
MboI GATC 5 cut(s) 143, 342, 438, 456, 863
MboII GAAGA 3 cut(s) 121, 698, 709
MflI RGATCY 1 cut(s) 143
MluCI AATT 4 cut(s) 433, 578, 648, 937
MlyI GAGTC 2 cut(s) 207, 672
MmeI TCCRAC 1 cut(s) 369
MroI TCCGGA 1 cut(s) 658
MspA1I CMGCKG 2 cut(s) 150, 709
MspI CCGG 6 cut(s) 138, 264, 503, 534, 659, 846
MspR9I CCNGG 8 cut(s) 167, 365, 381, 474, 504, 675, 847, 923
MvaI CCWGG 6 cut(s) 167, 365, 381, 474, 675, 923
MwoI GCNNNNNNNGC 7 cut(s) 156, 176, 284, 329, 569, 746, 767
NciI CCSGG 2 cut(s) 504, 847
NdeII GATC 5 cut(s) 143, 342, 438, 456, 863
NlaIII CATG 3 cut(s) 424, 457, 968
NlaIV GGNNCC 2 cut(s) 145, 193
PaeR7I CTCGAG 1 cut(s) 230
PasI CCCWGGG 2 cut(s) 380, 922
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 636
PfeI GAWTC 2 cut(s) 728, 780
PfoI TCCNGGA 1 cut(s) 673
PinAI ACCGGT 1 cut(s) 137
Ple19I CGATCG 1 cut(s) 345
PleI GAGTC 2 cut(s) 206, 672
PpsI GAGTC 2 cut(s) 206, 672
Ppu21I YACGTR 1 cut(s) 911
Psp6I CCWGG 6 cut(s) 165, 363, 379, 472, 673, 921
PspGI CCWGG 6 cut(s) 165, 363, 379, 472, 673, 921
PspN4I GGNNCC 2 cut(s) 145, 193
PspPI GGNCC 4 cut(s) 169, 338, 493, 500
PspXI VCTCGAGB 1 cut(s) 230
PstI CTGCAG 1 cut(s) 612
PsuI RGATCY 1 cut(s) 143
PvuI CGATCG 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 709
RsaI GTAC 3 cut(s) 804, 944, 982
RsaNI GTAC 3 cut(s) 803, 943, 981
Sau3AI GATC 5 cut(s) 143, 342, 438, 456, 863
Sau96I GGNCC 4 cut(s) 169, 338, 493, 500
SchI GAGTC 2 cut(s) 207, 672
ScrFI CCNGG 8 cut(s) 167, 365, 381, 474, 504, 675, 847, 923
SfaNI GCATC 3 cut(s) 162, 276, 298
SfcI CTRYAG 1 cut(s) 608
Sfr274I CTCGAG 1 cut(s) 230
SgrAI CRCCGGYG 1 cut(s) 137
SinI GGWCC 2 cut(s) 493, 500
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SnaBI TACGTA 1 cut(s) 911
Sse9I AATT 4 cut(s) 433, 578, 648, 937
StyD4I CCNGG 8 cut(s) 165, 363, 379, 472, 502, 673, 845, 921
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 106, 176, 497
TaiI ACGT 5 cut(s) 129, 297, 432, 642, 913
TaqI TCGA 6 cut(s) 231, 270, 327, 345, 509, 589
TasI AATT 4 cut(s) 433, 578, 648, 937
TauI GCSGC 4 cut(s) 153, 182, 335, 706
TfiI GAWTC 2 cut(s) 728, 780
TscAI CASTG 4 cut(s) 109, 688, 847, 938
TseI GCWGC 6 cut(s) 287, 464, 610, 706, 896, 917
TspDTI ATGAA 5 cut(s) 121, 409, 494, 758, 859
TspRI CASTG 4 cut(s) 109, 688, 847, 938
VpaK11BI GGWCC 2 cut(s) 493, 500
XapI RAATTY 1 cut(s) 578
XhoI CTCGAG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 952
ZraI GACGTC 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.