FvH4_4g14820

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
18450093 .. 18451764
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14820.t1

Sequence Viewer

Length: 1116 bp
ATGATTGGTGAGTCTACTGCGCAACTGGCACTGACCCGGTTAGAGGCGACGACTGCGACGAGAGCGAGTCTTTGTAGGCGTCAGATAAATTCTCACCGTCTCTATCCTCTCATTCCTTTGCAGACTGTATCGATGGGGGACCTCAATCTCTCCTTCCTCTCTCTCCTCATCCTCCCCCCTGCCGCTCTCCTCCTCCTCCTCTACATCATCGTCCGCCCCCGCCCCGCCACTGTCCCCATCAAGAACCGCCACGTCTTCATCACCGGCGGATCCAGCGGCATTGGGCTTGCCCTGGCCCACCGCGCTGCCTCCGAGGGTGCCAGAGTCTCCATCCTGGCCCGCTCACTTAACAAGCTGGAGGAGGCCAAGAACCTCATCCAGCTCTCCACCGGCATCGATGTCGCAGTGTTTGCTGCCGACGTCCGCGACTACGATGCCCTTTCAAAGGCGGTCGAGGCGGCAGGCCCGATTGACGTTTTGGTGGTCAACCAGGGAGTGTTTGTCCCTGGGGAGCTGGATAAGCAGGGATTGGACGATGTCAGGTTCATGGTGGACGTCAATTTGATGGGTAGCTTTAACATGATCAAAGCTGCTCTGCCTGCAATGAAGAAGGACAGGGAGGAGCGTGGACCGGGTTCTATTGCTATCATGTCGTCGCAGGCCGGTCAGGTGGGGATCTACGGCTACACAGCTTATTCCGCTAGCAAATTTGGGCTTAGGGGTTTGGCAGAAGCTCTGCAGCAAGAGGTCATTGCGGACAACATTCACGTTTCACTGATTTTCCCTCCGGATACTGACACTCCTGGACTCACTGAAGAAACTAAGAAGAGGCCGCAGCTGACCAGCATTATTGCCGAATCATCTGGTGCAATGAAAGCCGAGGATGTTGCAAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGAAGGGCGTATGTTGTCCATTGCCACTGCCGGGTTGTCGCCCCAGAGATCATTCATCATGGCATTTGTAGAGGTGCTTGCTGCTAGTGTTATACGGATAGTTGCTCTGGGATTTCAGTGGAATTGGTATACAAGCATACTCAAGTGGCATGGACAAAACAGAAGTATGTAG

Protein Analysis

372

Amino Acids

39.96

Weight (kDa)

8.98

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 84 - 276 3.2e-45 short chain dehydrogenase
KR PF08659 85 - 248 9.3e-11 KR domain
adh_short_C2 PF13561 92 - 287 4.4e-28 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 423, 558
Acc16I TGCGCA 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 317
AccBSI CCGCTC 2 cut(s) 185, 342
AccI GTMKAC 2 cut(s) 14, 1073
AccII CGCG 2 cut(s) 303, 426
AccIII TCCGGA 1 cut(s) 787
AclWI GGATC 3 cut(s) 264, 277, 683
AcsI RAATTY 2 cut(s) 88, 707
AcuI CTGAAG 1 cut(s) 834
AcyI GRCGYC 3 cut(s) 79, 420, 555
AfiI CCNNNNNNNGG 3 cut(s) 43, 445, 975
AgsI TTSAA 2 cut(s) 444, 947
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 5 cut(s) 291, 333, 489, 505, 802
AluBI AGCT 9 cut(s) 355, 382, 514, 573, 590, 692, 734, 838, 899
AluI AGCT 9 cut(s) 355, 382, 514, 573, 590, 692, 734, 838, 899
Alw26I GTCTC 2 cut(s) 104, 331
AlwI GGATC 3 cut(s) 264, 277, 683
Aor13HI TCCGGA 1 cut(s) 787
AoxI GGCC 6 cut(s) 294, 336, 363, 463, 660, 830
ApeKI GCWGC 6 cut(s) 305, 413, 590, 739, 835, 1025
ApoI RAATTY 2 cut(s) 88, 707
AspLEI GCGC 2 cut(s) 22, 305
AspS9I GGNCC 5 cut(s) 139, 295, 337, 464, 629
AsuC2I CCSGG 3 cut(s) 37, 633, 976
AsuHPI GGTGA 3 cut(s) 20, 86, 253
AsuNHI GCTAGC 1 cut(s) 701
AvaII GGWCC 2 cut(s) 139, 629
BamHI GGATCC 1 cut(s) 269
BanI GGYRCC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 247
BbvI GCAGC 6 cut(s) 292, 400, 577, 751, 847, 1012
BccI CCATC 5 cut(s) 127, 245, 338, 559, 899
BceAI ACGGC 1 cut(s) 697
BcgI CGANNNNNNTGC 6 cut(s) 382, 416, 416, 450, 869, 903
BciT130I CCWGG 5 cut(s) 293, 335, 491, 507, 804
BciVI GTATCC 1 cut(s) 784
BclI TGATCA 1 cut(s) 582
BcnI CCSGG 3 cut(s) 37, 633, 976
BcoDI GTCTC 2 cut(s) 104, 331
BfaI CTAG 2 cut(s) 702, 1029
BfmI CTRYAG 1 cut(s) 737
BfuI GTATCC 1 cut(s) 784
Bme1390I CCNGG 8 cut(s) 37, 293, 335, 491, 507, 633, 804, 976
Bme18I GGWCC 2 cut(s) 139, 629
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 5 cut(s) 139, 295, 337, 464, 629
BmiI GGNNCC 3 cut(s) 140, 271, 319
BmrFI CCNGG 8 cut(s) 37, 293, 335, 491, 507, 633, 804, 976
BmsI GCATC 2 cut(s) 402, 424
BmtI GCTAGC 1 cut(s) 705
BpiI GAAGAC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 716
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 3 cut(s) 37, 633, 976
Bsa29I ATCGAT 2 cut(s) 131, 396
BsaHI GRCGYC 3 cut(s) 79, 420, 555
BsaJI CCNNGG 6 cut(s) 291, 312, 490, 505, 506, 879
BsaWI WCCGGW 1 cut(s) 787
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 784, 814
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 445, 975
Bse118I RCCGGY 3 cut(s) 263, 389, 662
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 4 cut(s) 609, 750, 876, 963
BseAI TCCGGA 1 cut(s) 787
BseBI CCWGG 5 cut(s) 293, 335, 491, 507, 804
BseCI ATCGAT 2 cut(s) 131, 396
BseDI CCNNGG 6 cut(s) 291, 312, 490, 505, 506, 879
BseGI GGATG 5 cut(s) 168, 330, 375, 889, 910
BseLI CCNNNNNNNGG 3 cut(s) 43, 445, 975
BseMI GCAATG 4 cut(s) 609, 750, 876, 963
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 7 cut(s) 155, 179, 182, 185, 188, 374, 635
BseXI GCAGC 6 cut(s) 292, 400, 577, 751, 847, 1012
Bsh1236I CGCG 2 cut(s) 303, 426
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 6 cut(s) 296, 338, 365, 465, 662, 832
BshNI GGYRCC 1 cut(s) 317
BshVI ATCGAT 2 cut(s) 131, 396
BsiEI CGRYCG 1 cut(s) 453
BsiSI CCGG 7 cut(s) 37, 264, 390, 632, 663, 788, 975
BslFI GGGAC 3 cut(s) 152, 218, 488
BslI CCNNNNNNNGG 3 cut(s) 43, 445, 975
BsmAI GTCTC 2 cut(s) 104, 331
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 3 cut(s) 152, 218, 488
BsnI GGCC 6 cut(s) 296, 338, 365, 465, 662, 832
Bsp13I TCCGGA 1 cut(s) 787
Bsp143I GATC 4 cut(s) 269, 582, 675, 992
BspANI GGCC 6 cut(s) 296, 338, 365, 465, 662, 832
BspDI ATCGAT 2 cut(s) 131, 396
BspEI TCCGGA 1 cut(s) 787
BspFNI CGCG 2 cut(s) 303, 426
BspLI GGNNCC 3 cut(s) 140, 271, 319
BspMAI CTGCAG 1 cut(s) 741
BspOI GCTAGC 1 cut(s) 705
BspPI GGATC 3 cut(s) 264, 277, 683
BspT107I GGYRCC 1 cut(s) 317
BsrBI CCGCTC 2 cut(s) 185, 342
BsrDI GCAATG 4 cut(s) 609, 750, 876, 963
BsrFI RCCGGY 3 cut(s) 263, 389, 662
BsrI ACTGG 1 cut(s) 30
BssAI RCCGGY 3 cut(s) 263, 389, 662
BssECI CCNNGG 6 cut(s) 291, 312, 490, 505, 506, 879
BssMI GATC 4 cut(s) 269, 582, 675, 992
BssNAI GTATAC 1 cut(s) 1074
BssNI GRCGYC 3 cut(s) 79, 420, 555
Bst1107I GTATAC 1 cut(s) 1074
Bst2UI CCWGG 5 cut(s) 293, 335, 491, 507, 804
Bst4CI ACNGT 3 cut(s) 98, 127, 232
Bst6I CTCTTC 1 cut(s) 821
BstACI GRCGYC 3 cut(s) 79, 420, 555
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 7 cut(s) 288, 340, 463, 600, 660, 703, 1023
BstDEI CTNAG 2 cut(s) 716, 822
BstENI CCTNNNNNAGG 1 cut(s) 443
BstF5I GGATG 5 cut(s) 168, 330, 375, 889, 910
BstFNI CGCG 2 cut(s) 303, 426
BstHHI GCGC 2 cut(s) 22, 305
BstKTI GATC 4 cut(s) 272, 585, 678, 995
BstMAI GTCTC 2 cut(s) 104, 331
BstMBI GATC 4 cut(s) 269, 582, 675, 992
BstMCI CGRYCG 1 cut(s) 453
BstNI CCWGG 5 cut(s) 293, 335, 491, 507, 804
BstSCI CCNGG 8 cut(s) 35, 291, 333, 489, 505, 631, 802, 974
BstSFI CTRYAG 1 cut(s) 737
BstUI CGCG 2 cut(s) 303, 426
BstV1I GCAGC 6 cut(s) 292, 400, 577, 751, 847, 1012
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 2 cut(s) 269, 675
BstYI RGATCY 2 cut(s) 269, 675
BstZ17I GTATAC 1 cut(s) 1074
Bsu15I ATCGAT 2 cut(s) 131, 396
BsuI GTATCC 1 cut(s) 784
BsuRI GGCC 6 cut(s) 296, 338, 365, 465, 662, 832
BsuTUI ATCGAT 2 cut(s) 131, 396
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 5 cut(s) 168, 330, 375, 889, 910
BtsI GCAGTG 2 cut(s) 411, 969
BtsIMutI CAGTG 7 cut(s) 29, 228, 411, 773, 810, 969, 1067
Cac8I GCNNGC 7 cut(s) 288, 340, 463, 600, 660, 703, 1023
CfoI GCGC 2 cut(s) 22, 305
Cfr10I RCCGGY 3 cut(s) 263, 389, 662
Cfr13I GGNCC 5 cut(s) 139, 295, 337, 464, 629
ClaI ATCGAT 2 cut(s) 131, 396
CseI GACGC 1 cut(s) 68
CviAII CATG 5 cut(s) 547, 580, 649, 1003, 1094
DdeI CTNAG 2 cut(s) 716, 822
DpnI GATC 4 cut(s) 271, 584, 677, 994
DpnII GATC 4 cut(s) 269, 582, 675, 992
Eam1104I CTCTTC 1 cut(s) 821
EarI CTCTTC 1 cut(s) 821
EciI GGCGGA 2 cut(s) 203, 282
Eco47I GGWCC 2 cut(s) 139, 629
Eco57I CTGAAG 1 cut(s) 834
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 5 cut(s) 291, 333, 489, 505, 802
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 5 cut(s) 550, 583, 652, 1006, 1097
FaqI GGGAC 3 cut(s) 152, 218, 488
FatI CATG 5 cut(s) 546, 579, 648, 1002, 1093
FauI CCCGC 3 cut(s) 227, 232, 347
FbaI TGATCA 1 cut(s) 582
FblI GTMKAC 2 cut(s) 14, 1073
FokI GGATG 5 cut(s) 155, 317, 362, 896, 917
FspBI CTAG 2 cut(s) 702, 1029
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 2 cut(s) 21, 304
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 6 cut(s) 296, 338, 365, 465, 662, 832
HapII CCGG 7 cut(s) 37, 264, 390, 632, 663, 788, 975
HgaI GACGC 1 cut(s) 68
HhaI GCGC 2 cut(s) 22, 305
Hin1I GRCGYC 3 cut(s) 79, 420, 555
Hin1II CATG 5 cut(s) 550, 583, 652, 1006, 1097
Hin6I GCGC 2 cut(s) 20, 303
HinP1I GCGC 2 cut(s) 20, 303
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 6 cut(s) 11, 67, 324, 807, 857, 909
HpaII CCGG 7 cut(s) 37, 264, 390, 632, 663, 788, 975
HphI GGTGA 3 cut(s) 20, 86, 253
Hpy166II GTNNAC 5 cut(s) 15, 487, 553, 629, 1074
Hpy188I TCNGA 2 cut(s) 84, 313
Hpy188III TCNNGA 2 cut(s) 241, 788
Hpy8I GTNNAC 5 cut(s) 15, 487, 553, 629, 1074
Hpy99I CGWCG 4 cut(s) 52, 61, 422, 658
HpyAV CCTTC 3 cut(s) 163, 604, 941
HpyCH4III ACNGT 3 cut(s) 98, 127, 232
HpyCH4IV ACGT 5 cut(s) 252, 420, 474, 555, 768
HpyCH4V TGCA 6 cut(s) 121, 602, 739, 869, 890, 939
HpyF3I CTNAG 2 cut(s) 716, 822
HpySE526I ACGT 5 cut(s) 252, 420, 474, 555, 768
Hsp92I GRCGYC 3 cut(s) 79, 420, 555
Hsp92II CATG 5 cut(s) 550, 583, 652, 1006, 1097
HspAI GCGC 2 cut(s) 20, 303
Kpn2I TCCGGA 1 cut(s) 787
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 4 cut(s) 269, 582, 675, 992
LmnI GCTCC 2 cut(s) 511, 622
Lsp1109I GCAGC 6 cut(s) 292, 400, 577, 751, 847, 1012
LweI GCATC 2 cut(s) 402, 424
MaeI CTAG 2 cut(s) 702, 1029
MaeII ACGT 5 cut(s) 252, 420, 474, 555, 768
MalI GATC 4 cut(s) 271, 584, 677, 994
MbiI CCGCTC 2 cut(s) 185, 342
MboI GATC 4 cut(s) 269, 582, 675, 992
MboII GAAGA 4 cut(s) 247, 619, 827, 838
MflI RGATCY 2 cut(s) 269, 675
MluCI AATT 4 cut(s) 88, 559, 707, 1066
MlyI GAGTC 4 cut(s) 20, 76, 333, 801
MroI TCCGGA 1 cut(s) 787
MseI TTAA 2 cut(s) 348, 576
MspA1I CMGCKG 2 cut(s) 276, 838
MspI CCGG 7 cut(s) 37, 264, 390, 632, 663, 788, 975
MspR9I CCNGG 8 cut(s) 37, 293, 335, 491, 507, 633, 804, 976
MvaI CCWGG 5 cut(s) 293, 335, 491, 507, 804
MvnI CGCG 2 cut(s) 303, 426
NciI CCSGG 3 cut(s) 37, 633, 976
NdeII GATC 4 cut(s) 269, 582, 675, 992
NheI GCTAGC 1 cut(s) 701
NlaIII CATG 5 cut(s) 550, 583, 652, 1006, 1097
NlaIV GGNNCC 3 cut(s) 140, 271, 319
NmeAIII GCCGAG 1 cut(s) 904
NsbI TGCGCA 1 cut(s) 21
PasI CCCWGGG 1 cut(s) 506
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 2 cut(s) 857, 909
PflFI GACNNNGTC 1 cut(s) 536
PfoI TCCNGGA 1 cut(s) 802
PleI GAGTC 4 cut(s) 19, 75, 332, 801
PpsI GAGTC 4 cut(s) 19, 75, 332, 801
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 5 cut(s) 291, 333, 489, 505, 802
PspGI CCWGG 5 cut(s) 291, 333, 489, 505, 802
PspN4I GGNNCC 3 cut(s) 140, 271, 319
PspPI GGNCC 5 cut(s) 139, 295, 337, 464, 629
PspPPI RGGWCCY 1 cut(s) 139
PstI CTGCAG 1 cut(s) 741
PsuI RGATCY 2 cut(s) 269, 675
PsyI GACNNNGTC 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 838
SaqAI TTAA 2 cut(s) 348, 576
Sau3AI GATC 4 cut(s) 269, 582, 675, 992
Sau96I GGNCC 5 cut(s) 139, 295, 337, 464, 629
SchI GAGTC 4 cut(s) 20, 76, 333, 801
ScrFI CCNGG 8 cut(s) 37, 293, 335, 491, 507, 633, 804, 976
SfaNI GCATC 2 cut(s) 402, 424
SfcI CTRYAG 1 cut(s) 737
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 2 cut(s) 139, 629
SmlI CTYRAG 1 cut(s) 1085
SmoI CTYRAG 1 cut(s) 1085
Sse9I AATT 4 cut(s) 88, 559, 707, 1066
SspMI CTAG 2 cut(s) 702, 1029
StyD4I CCNGG 8 cut(s) 35, 291, 333, 489, 505, 631, 802, 974
TaaI ACNGT 3 cut(s) 98, 127, 232
TaiI ACGT 5 cut(s) 255, 423, 477, 558, 771
TaqI TCGA 3 cut(s) 131, 396, 453
TasI AATT 4 cut(s) 88, 559, 707, 1066
TauI GCSGC 4 cut(s) 185, 279, 461, 835
TfiI GAWTC 2 cut(s) 857, 909
Tru1I TTAA 2 cut(s) 348, 576
Tru9I TTAA 2 cut(s) 348, 576
TscAI CASTG 7 cut(s) 36, 235, 411, 780, 817, 976, 1067
TseI GCWGC 6 cut(s) 305, 413, 590, 739, 835, 1025
TspDTI ATGAA 5 cut(s) 247, 535, 620, 887, 988
TspGWI ACGGA 1 cut(s) 1054
TspRI CASTG 7 cut(s) 36, 235, 411, 780, 817, 976, 1067
Tth111I GACNNNGTC 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 139, 629
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 2 cut(s) 88, 707
XmiI GTMKAC 2 cut(s) 14, 1073
XspI CTAG 2 cut(s) 702, 1029
ZraI GACGTC 2 cut(s) 421, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.