Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002793.1

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

55985 .. 56368

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002793.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggcggaccccaacttctccttccttttcatcctccctctcgctctcctcctcctcctttacttcatcgtccgcccccgccccaccaccatcccaatcaagaaccgccacgtcttcatcaccggcggttccagcggcatcggcctcgccctggcccacctcgcagccgctgagggagccaaagtctccatcctcgcactacctttcgacaagcttgaggaggccaaaaactacatccagctctccactggcattgacgtcgccgtcttcgccgccgatgtccgtgactatgacgcagtttcaaaggctattgaggcggcgggcccgattgatgtgttggtagtcaaccatggagtgtttgtgggcggggagttagagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

127

Amino Acids

13.53

Weight (kDa)

5.49

Isoelectric Point (pI)

22.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	303
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	214, 241
AluI	AGCT	2 cut(s)	214, 241
Alw26I	GTCTC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	4 cut(s)	142, 153, 222, 322
ApaI	GGGCCC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	164
AspS9I	GGNCC	4 cut(s)	7, 154, 322, 323
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	326
BbsI	GAAGAC	2 cut(s)	106, 259
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	2 cut(s)	98, 197
BceAI	ACGGC	1 cut(s)	248
BcgI	CGANNNNNNTGC	4 cut(s)	127, 161, 241, 275
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	190
BisI	GCNGC	5 cut(s)	136, 165, 168, 273, 318
BlsI	GCNGC	5 cut(s)	137, 166, 169, 274, 319
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	7
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	7, 154, 322, 323
BmiI	GGNNCC	4 cut(s)	9, 130, 178, 324
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	106, 259
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	150, 349
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	150, 349
BseGI	GGATG	4 cut(s)	30, 90, 189, 234
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	4 cut(s)	38, 41, 44, 233
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	176
BshFI	GGCC	4 cut(s)	144, 155, 224, 324
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	144, 155, 224, 324
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp19I	CCATGG	1 cut(s)	349
BspANI	GGCC	4 cut(s)	144, 155, 224, 324
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	9, 130, 178, 324
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	150, 349
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	4 cut(s)	30, 90, 189, 234
BstMAI	GTCTC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 141, 161, 176, 269, 314
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	2 cut(s)	106, 259
BsuRI	GGCC	4 cut(s)	144, 155, 224, 324
BtgI	CCRYGG	1 cut(s)	349
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	4 cut(s)	30, 90, 189, 234
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	7, 154, 322, 323
CseI	GACGC	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	9 cut(s)	144, 155, 167, 179, 214, 224, 241, 308, 324
CviKI_1	RGCY	9 cut(s)	144, 155, 167, 179, 214, 224, 241, 308, 324
DdeI	CTNAG	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EciI	GGCGGA	2 cut(s)	20, 62
Eco130I	CCWWGG	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	353
FaiI	YATR	2 cut(s)	291, 351
FatI	CATG	1 cut(s)	349
FauI	CCCGC	3 cut(s)	86, 313, 359
Fnu4HI	GCNGC	5 cut(s)	136, 165, 168, 273, 318
FokI	GGATG	4 cut(s)	17, 77, 176, 221
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	5 cut(s)	136, 165, 168, 273, 318
GluI	GCNGC	5 cut(s)	136, 165, 168, 273, 318
HaeIII	GGCC	4 cut(s)	144, 155, 224, 324
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	212
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	111, 258
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 141, 161, 176, 269, 314
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	111, 258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	6 cut(s)	136, 137, 145, 164, 234, 251
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	2 cut(s)	111, 258
MaeIII	GTNAC	1 cut(s)	284
MboII	GAAGA	2 cut(s)	106, 259
MhlI	GDGCHC	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	135, 170
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	6 cut(s)	132, 141, 161, 176, 269, 314
NcoI	CCATGG	1 cut(s)	349
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	4 cut(s)	9, 130, 178, 324
NmuCI	GTSAC	1 cut(s)	284
PkrI	GCNGC	5 cut(s)	137, 166, 169, 274, 319
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	4 cut(s)	9, 130, 178, 324
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	4 cut(s)	7, 154, 322, 323
PstNI	CAGNNNCTG	1 cut(s)	170
SatI	GCNGC	5 cut(s)	136, 165, 168, 273, 318
Sau96I	GGNCC	4 cut(s)	7, 154, 322, 323
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	6 cut(s)	114, 162, 205, 216, 243, 261
SfaNI	GCATC	1 cut(s)	147
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	349
TaiI	ACGT	2 cut(s)	114, 261
TaqI	TCGA	1 cut(s)	207
TauI	GCSGC	4 cut(s)	138, 170, 275, 320
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	19, 55, 106
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.