RLG00000013658

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
35268029 .. 35269158
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013658

Sequence Viewer

Length: 972 bp
ATGGCGGACCCCATCTTCTCCTTCCTCCTCCTCCTCACTCCCGCTCTCCTCCTCCTCCTTTACTTCATTGTCCGCCCCCGCCCCACCACTATCCCAATCAAGAACCGCCACGTCTTCATCACCGGTGGTTCTAGCGGCATCGGCCTCGCCTTGGCCCACCGCGCCGCCTCTGAGGGCGCCAAAGTCTCCATCCTTGCGCGCTCTTTCGACAAGCTAGAGGAGGCCAAGAACTACATCCAACTCTCCACAGGCATCGACGTCACCGTCTTCACCGCTGACGTGCGTGACTATGAAGCAGTTTCGAAGGTTGTCGAGGCAGCGGGCCCGATCGACGTGTTAGTAGTCAACCAGGGAGTGTTTGTGACCAAGGAGTTGGAGAAGCAGGGATTGGATGAGGTCAGGTTCATGGTGGACGTCAATTTGATGGGTAGCTTCAACATGATCAAAGCTGCTTTGCCGAGAATGAAAGACAGGAAGGACCGTGGACCGGGTTCGATTGCTTTGATGTCATCTCAGGTTGGTCAGGTTGGGATTTACGGCTACACGGCTTATTCGGCTAGCAAATTTGGGCTTCGAGGTTTGGCTGAAGCTCTACAGCAAGAGGTCATTATAGACGACATTCACGTTTCGCTAATTTTCCCTCCTGCTACTGACACTCCTGGACTCACTAAAGAAGCTAAGAAGAGGCCGCAACTGACCAGCATTATCACAAAATCCTCTGGTGTAATGAAAGCTGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCTTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGCCGGATTGTCGCCTCAGAGATCGTTCGTGATGGTATTTGTGGAGGTGGTTGCTGCTGGTATTATACGTATTGCTGCTTTGGGATGTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGTAAGTAG

Protein Analysis

324

Amino Acids

35.04

Weight (kDa)

9.28

Isoelectric Point (pI)

24.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 37 - 227 3.8e-45 short chain dehydrogenase
KR PF08659 38 - 200 2.2e-10 KR domain
adh_short_C2 PF13561 45 - 249 6e-28 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AatII GACGTC 2 cut(s) 261, 417
AccB1I GGYRCC 1 cut(s) 176
AccBSI CCGCTC 1 cut(s) 44
AccI GTMKAC 2 cut(s) 929, 937
AccII CGCG 2 cut(s) 162, 199
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 3 cut(s) 177, 258, 414
AfiI CCNNNNNNNGG 2 cut(s) 151, 487
AflIII ACRYGT 1 cut(s) 333
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 2 cut(s) 436, 803
AjiI CACGTC 3 cut(s) 112, 280, 334
AjnI CCWGG 2 cut(s) 348, 658
AjuI GAANNNNNNNTTGG 4 cut(s) 371, 403, 740, 772
AluBI AGCT 7 cut(s) 214, 432, 449, 590, 677, 734, 755
AluI AGCT 7 cut(s) 214, 432, 449, 590, 677, 734, 755
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 5 cut(s) 142, 153, 222, 322, 686
ApaI GGGCCC 1 cut(s) 326
ApeKI GCWGC 4 cut(s) 317, 449, 881, 902
ApoI RAATTY 1 cut(s) 563
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 4 cut(s) 164, 179, 199, 201
AspS9I GGNCC 6 cut(s) 7, 154, 322, 323, 478, 485
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 3 cut(s) 112, 253, 262
AsuII TTCGAA 1 cut(s) 302
AsuNHI GCTAGC 1 cut(s) 557
AvaII GGWCC 3 cut(s) 7, 478, 485
BaeGI GKGCMC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 326
BbsI GAAGAC 2 cut(s) 106, 259
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 4 cut(s) 329, 436, 868, 889
BccI CCATC 5 cut(s) 20, 197, 418, 755, 853
BceAI ACGGC 2 cut(s) 553, 561
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 2 cut(s) 350, 660
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 3 cut(s) 132, 215, 558
BfmI CTRYAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 180
BisI GCNGC 7 cut(s) 136, 165, 318, 450, 689, 882, 903
BlsI GCNGC 7 cut(s) 137, 166, 319, 451, 690, 883, 904
Bme1390I CCNGG 3 cut(s) 350, 489, 660
Bme18I GGWCC 3 cut(s) 7, 478, 485
BmgBI CACGTC 3 cut(s) 112, 280, 334
BmgT120I GGNCC 6 cut(s) 7, 154, 322, 323, 478, 485
BmiI GGNNCC 3 cut(s) 9, 178, 324
BmrFI CCNGG 3 cut(s) 350, 489, 660
BmsI GCATC 2 cut(s) 147, 261
BmtI GCTAGC 1 cut(s) 561
BpiI GAAGAC 2 cut(s) 106, 259
Bpu10I CCTNAGC 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 896
BsaHI GRCGYC 3 cut(s) 177, 258, 414
BsaJI CCNNGG 4 cut(s) 150, 349, 366, 481
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 640, 670
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 487
Bse118I RCCGGY 1 cut(s) 122
BseBI CCWGG 2 cut(s) 350, 660
BseDI CCNNGG 4 cut(s) 150, 349, 366, 481
BseGI GGATG 5 cut(s) 189, 234, 397, 766, 917
BseLI CCNNNNNNNGG 2 cut(s) 151, 487
BseMII CTCAG 4 cut(s) 162, 527, 726, 857
BsePI GCGCGC 1 cut(s) 197
BseRI GAGGAG 7 cut(s) 17, 20, 23, 38, 41, 44, 233
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 4 cut(s) 329, 436, 868, 889
Bsh1236I CGCG 2 cut(s) 162, 199
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 5 cut(s) 144, 155, 224, 324, 688
BshNI GGYRCC 1 cut(s) 176
BshTI ACCGGT 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 330
BsiSI CCGG 3 cut(s) 123, 488, 831
BslI CCNNNNNNNGG 2 cut(s) 151, 487
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 5 cut(s) 144, 155, 224, 324, 688
Bsp119I TTCGAA 1 cut(s) 302
Bsp120I GGGCCC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 3 cut(s) 327, 441, 848
BspANI GGCC 5 cut(s) 144, 155, 224, 324, 688
BspCNI CTCAG 4 cut(s) 163, 526, 727, 856
BspFNI CGCG 2 cut(s) 162, 199
BspLI GGNNCC 3 cut(s) 9, 178, 324
BspOI GCTAGC 1 cut(s) 561
BspT104I TTCGAA 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 4 cut(s) 150, 349, 366, 481
BssHII GCGCGC 1 cut(s) 197
BssMI GATC 3 cut(s) 327, 441, 848
BssNAI GTATAC 2 cut(s) 930, 938
BssNI GRCGYC 3 cut(s) 177, 258, 414
BssT1I CCWWGG 2 cut(s) 150, 366
Bst1107I GTATAC 2 cut(s) 930, 938
Bst2UI CCWGG 2 cut(s) 350, 660
Bst4CI ACNGT 2 cut(s) 265, 482
Bst6I CTCTTC 1 cut(s) 677
BstACI GRCGYC 3 cut(s) 177, 258, 414
BstBAI YACGTR 1 cut(s) 896
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 199, 322, 559
BstDEI CTNAG 5 cut(s) 171, 513, 678, 735, 843
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 5 cut(s) 189, 234, 397, 766, 917
BstFNI CGCG 2 cut(s) 162, 199
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 4 cut(s) 164, 179, 199, 201
BstKTI GATC 3 cut(s) 330, 444, 851
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 3 cut(s) 327, 441, 848
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 4 cut(s) 141, 161, 554, 752
BstNI CCWGG 2 cut(s) 350, 660
BstSCI CCNGG 3 cut(s) 348, 487, 658
BstSFI CTRYAG 1 cut(s) 593
BstSLI GKGCMC 1 cut(s) 326
BstSNI TACGTA 1 cut(s) 896
BstUI CGCG 2 cut(s) 162, 199
BstV1I GCAGC 4 cut(s) 329, 436, 868, 889
BstV2I GAAGAC 2 cut(s) 106, 259
BstXI CCANNNNNNTGG 1 cut(s) 373
BstZ17I GTATAC 2 cut(s) 930, 938
BsuRI GGCC 5 cut(s) 144, 155, 224, 324, 688
BtgI CCRYGG 1 cut(s) 481
BtrI CACGTC 3 cut(s) 112, 280, 334
BtsCI GGATG 5 cut(s) 189, 234, 397, 766, 917
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 2 cut(s) 825, 923
Cac8I GCNNGC 3 cut(s) 199, 322, 559
CfoI GCGC 4 cut(s) 164, 179, 199, 201
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 6 cut(s) 7, 154, 322, 323, 478, 485
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 3 cut(s) 406, 439, 950
DdeI CTNAG 5 cut(s) 171, 513, 678, 735, 843
DinI GGCGCC 1 cut(s) 178
DpnI GATC 3 cut(s) 329, 443, 850
DpnII GATC 3 cut(s) 327, 441, 848
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
EciI GGCGGA 2 cut(s) 20, 62
Eco105I TACGTA 1 cut(s) 896
Eco130I CCWWGG 2 cut(s) 150, 366
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 3 cut(s) 7, 478, 485
Eco57I CTGAAG 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 348, 658
EcoT14I CCWWGG 2 cut(s) 150, 366
EcoT38I GRGCYC 1 cut(s) 326
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 2 cut(s) 150, 366
FaeI CATG 3 cut(s) 409, 442, 953
FaiI YATR 8 cut(s) 291, 407, 440, 611, 893, 930, 938, 951
FatI CATG 3 cut(s) 405, 438, 949
FauI CCCGC 3 cut(s) 49, 86, 313
FbaI TGATCA 1 cut(s) 441
FblI GTMKAC 2 cut(s) 929, 937
Fnu4HI GCNGC 7 cut(s) 136, 165, 318, 450, 689, 882, 903
FokI GGATG 5 cut(s) 176, 221, 404, 773, 924
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 7 cut(s) 136, 165, 318, 450, 689, 882, 903
FspBI CTAG 3 cut(s) 132, 215, 558
GlaI GCGC 4 cut(s) 163, 178, 198, 200
GluI GCNGC 7 cut(s) 136, 165, 318, 450, 689, 882, 903
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 5 cut(s) 144, 155, 224, 324, 688
HapII CCGG 3 cut(s) 123, 488, 831
HhaI GCGC 4 cut(s) 164, 179, 199, 201
Hin1I GRCGYC 3 cut(s) 177, 258, 414
Hin1II CATG 3 cut(s) 409, 442, 953
Hin6I GCGC 4 cut(s) 162, 177, 197, 199
HinP1I GCGC 4 cut(s) 162, 177, 197, 199
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 2 cut(s) 663, 765
HpaII CCGG 3 cut(s) 123, 488, 831
HphI GGTGA 3 cut(s) 112, 253, 262
Hpy166II GTNNAC 5 cut(s) 346, 412, 485, 930, 938
Hpy188I TCNGA 2 cut(s) 172, 846
Hpy188III TCNNGA 2 cut(s) 100, 856
Hpy8I GTNNAC 5 cut(s) 346, 412, 485, 930, 938
Hpy99I CGWCG 2 cut(s) 260, 335
HpyAV CCTTC 4 cut(s) 31, 298, 469, 797
HpyCH4III ACNGT 2 cut(s) 265, 482
HpyCH4IV ACGT 7 cut(s) 111, 258, 279, 333, 414, 624, 895
HpyCH4V TGCA 1 cut(s) 795
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 161, 554, 752
HpyF3I CTNAG 5 cut(s) 171, 513, 678, 735, 843
HpySE526I ACGT 7 cut(s) 111, 258, 279, 333, 414, 624, 895
Hsp92I GRCGYC 3 cut(s) 177, 258, 414
Hsp92II CATG 3 cut(s) 409, 442, 953
HspAI GCGC 4 cut(s) 162, 177, 197, 199
KasI GGCGCC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 3 cut(s) 327, 441, 848
Lsp1109I GCAGC 4 cut(s) 329, 436, 868, 889
LweI GCATC 2 cut(s) 147, 261
MaeI CTAG 3 cut(s) 132, 215, 558
MaeII ACGT 7 cut(s) 111, 258, 279, 333, 414, 624, 895
MaeIII GTNAC 3 cut(s) 259, 284, 361
MalI GATC 3 cut(s) 329, 443, 850
MbiI CCGCTC 1 cut(s) 44
MboI GATC 3 cut(s) 327, 441, 848
MboII GAAGA 5 cut(s) 7, 106, 259, 694, 760
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 4 cut(s) 418, 563, 633, 922
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 657
MmeI TCCRAC 2 cut(s) 262, 354
MspA1I CMGCKG 2 cut(s) 275, 320
MspI CCGG 3 cut(s) 123, 488, 831
MspR9I CCNGG 3 cut(s) 350, 489, 660
MvaI CCWGG 2 cut(s) 350, 660
MvnI CGCG 2 cut(s) 162, 199
MwoI GCNNNNNNNGC 4 cut(s) 141, 161, 554, 752
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 1 cut(s) 489
NdeII GATC 3 cut(s) 327, 441, 848
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 3 cut(s) 409, 442, 953
NlaIV GGNNCC 3 cut(s) 9, 178, 324
NmeAIII GCCGAG 1 cut(s) 483
NmuCI GTSAC 3 cut(s) 259, 284, 361
NspV TTCGAA 1 cut(s) 302
PauI GCGCGC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 621
PfeI GAWTC 1 cut(s) 765
PfoI TCCNGGA 1 cut(s) 658
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 7 cut(s) 137, 166, 319, 451, 690, 883, 904
Ple19I CGATCG 1 cut(s) 330
PleI GAGTC 1 cut(s) 657
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 657
Ppu21I YACGTR 1 cut(s) 896
Psp6I CCWGG 2 cut(s) 348, 658
PspGI CCWGG 2 cut(s) 348, 658
PspN4I GGNNCC 3 cut(s) 9, 178, 324
PspOMI GGGCCC 1 cut(s) 322
PspPI GGNCC 6 cut(s) 7, 154, 322, 323, 478, 485
PteI GCGCGC 1 cut(s) 197
PvuI CGATCG 1 cut(s) 330
SatI GCNGC 7 cut(s) 136, 165, 318, 450, 689, 882, 903
Sau3AI GATC 3 cut(s) 327, 441, 848
Sau96I GGNCC 6 cut(s) 7, 154, 322, 323, 478, 485
SchI GAGTC 1 cut(s) 657
ScrFI CCNGG 3 cut(s) 350, 489, 660
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 2 cut(s) 147, 261
SfcI CTRYAG 1 cut(s) 593
SfoI GGCGCC 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 302
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 3 cut(s) 7, 478, 485
SnaBI TACGTA 1 cut(s) 896
Sse9I AATT 4 cut(s) 418, 563, 633, 922
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 3 cut(s) 132, 215, 558
StyD4I CCNGG 3 cut(s) 348, 487, 658
StyI CCWWGG 2 cut(s) 150, 366
TaaI ACNGT 2 cut(s) 265, 482
TaiI ACGT 7 cut(s) 114, 261, 282, 336, 417, 627, 898
TaqI TCGA 7 cut(s) 207, 255, 302, 312, 330, 494, 574
TasI AATT 4 cut(s) 418, 563, 633, 922
TauI GCSGC 3 cut(s) 138, 167, 691
TfiI GAWTC 1 cut(s) 765
TscAI CASTG 2 cut(s) 832, 923
TseFI GTSAC 3 cut(s) 259, 284, 361
TseI GCWGC 4 cut(s) 317, 449, 881, 902
Tsp45I GTSAC 3 cut(s) 259, 284, 361
TspDTI ATGAA 6 cut(s) 55, 106, 306, 394, 479, 743
TspRI CASTG 2 cut(s) 832, 923
VpaK11BI GGWCC 3 cut(s) 7, 478, 485
XapI RAATTY 1 cut(s) 563
XmiI GTMKAC 2 cut(s) 929, 937
XspI CTAG 3 cut(s) 132, 215, 558
ZraI GACGTC 2 cut(s) 259, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.