pycom13g16020

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
11804071 .. 11806053
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g16020.2

Sequence Viewer

Length: 1044 bp
ATGTATTTCCTGTCCGGGTCTGTGCGTACACAACGCAAACACTCACACTATCAACGCTTTCGCATCTCCGTCAATGGCGGACCTCTCCTTCCTCGCCCTCCTCCTCCCGCTCGCCCTCCTCTTCCTCATTCTCTACGTCATAGTCCGGCCCCACCCCGTCAACATCCCAATCAAGAATCGCCACGTGTTCATCACCGGAGGCTCCAGCGGAATCGGTCTCGCCTTGGCCCACCAGGCCGCAACGGAGGGCGCAAGAGTCTCCATCCTCGCGCGCTCCTCGACAAGCTCGAGGAAGCAAAGAACTACATCCAGCTCTCCACCGGCATCGACGTGTCAATCTTCGCCGCCGACGTCCGCGACTACGACGCCGTATCGAAGGCAGTGGAGGAGGCGGGTCCCATCGACTTGTTGATCGTGAACCAGGGGGTGTTCGTCGCCGAGGAGCTCGAGAAGCAGGGATTGGATGAGGTGAAGTTCATGGTGGAGGTGAATCTGATTGGGAGCTTCAACATGATCGAAGACGCTGTCCCCGAAATGAAGAAGGGAGAGGACCGTGGGCCCCGCTCGATCGCGCTGATGTCATCCCAGGCCGGCCAGGTCGGAATCTACGGCTACACGGCCTACTCCGCCAGCAAGTTCGGGCTCCGTGGCTTGGGCGAGGCTCTGCAGCAAGAGGTGATTTCTCACGACATTCACGTTTCTCTTGTATTCCCGCCAGACACAGACACCCCTGGTTTGGCTGAAGAGAACAAGAGGCGGCCGCCGCTGACTGGCATTATAGCGGAGTCGTCTGGGGCGATGAAAGCCGAAGATGTTGCGAAGAGGGCTTTGGATGGGATTAAGTCCGCTTCTTTTATTGTGCGTTGCAACTTTGAAGGGTTATTGTTGTCCATTGCCACTGCTGGGTTGTCTCCTCAGAGGTCGTTCGTTATGGCATTTTTTGAGGTGGTTGCAGGTGGTTTGGTTCGTCTTGTTGCTCTGTGTTTTCAGTGGAGTTGGTATACCAGCATACAGAAGTGGCAAGCACAGAACAAGAGGACCTGA

Protein Analysis

348

Amino Acids

38.37

Weight (kDa)

9.56

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 944
AatII GACGTC 1 cut(s) 354
Acc36I ACCTGC 1 cut(s) 944
AccBSI CCGCTC 2 cut(s) 110, 564
AccI GTMKAC 1 cut(s) 1001
AccII CGCG 4 cut(s) 270, 272, 357, 572
AcoI YGGCCR 2 cut(s) 592, 758
AcuI CTGAAG 1 cut(s) 762
AcvI CACGTG 1 cut(s) 185
AcyI GRCGYC 2 cut(s) 351, 366
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 4 cut(s) 652, 736, 770, 903
AflIII ACRYGT 2 cut(s) 184, 330
AgsI TTSAA 2 cut(s) 508, 875
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 5 cut(s) 232, 420, 585, 594, 730
AjuI GAANNNNNNNTTGG 4 cut(s) 443, 475, 812, 844
AluBI AGCT 4 cut(s) 286, 313, 445, 504
AluI AGCT 4 cut(s) 286, 313, 445, 504
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 3 cut(s) 222, 263, 915
Ama87I CYCGRG 2 cut(s) 287, 446
AoxI GGCC 8 cut(s) 147, 226, 235, 557, 588, 592, 618, 758
ApaI GGGCCC 1 cut(s) 561
ApeKI GCWGC 1 cut(s) 667
ArsI GACNNNNNNTTYG 2 cut(s) 510, 542
AspLEI GCGC 4 cut(s) 252, 272, 274, 574
AspS9I GGNCC 8 cut(s) 80, 148, 227, 395, 550, 557, 558, 1038
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 4 cut(s) 185, 481, 499, 688
AvaI CYCGRG 2 cut(s) 287, 446
AvaII GGWCC 4 cut(s) 80, 395, 550, 1038
BaeGI GKGCMC 1 cut(s) 561
BanII GRGCYC 3 cut(s) 447, 561, 645
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 679
BccI CCATC 3 cut(s) 270, 407, 827
BceAI ACGGC 3 cut(s) 353, 625, 633
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 5 cut(s) 234, 422, 587, 596, 732
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 3 cut(s) 222, 263, 915
BfmI CTRYAG 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 944
BglI GCCNNNNNGGC 1 cut(s) 234
BisI GCNGC 6 cut(s) 238, 345, 668, 758, 761, 764
BlsI GCNGC 6 cut(s) 239, 346, 669, 759, 762, 765
Bme1390I CCNGG 6 cut(s) 16, 234, 422, 587, 596, 732
Bme18I GGWCC 4 cut(s) 80, 395, 550, 1038
BmeT110I CYCGRG 2 cut(s) 287, 446
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 8 cut(s) 80, 148, 227, 395, 550, 557, 558, 1038
BmiI GGNNCC 7 cut(s) 150, 203, 396, 397, 559, 560, 644
BmrFI CCNGG 6 cut(s) 16, 234, 422, 587, 596, 732
BmsI GCATC 2 cut(s) 72, 333
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 185
BsaHI GRCGYC 2 cut(s) 351, 366
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 7 cut(s) 223, 421, 438, 553, 585, 646, 730
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 4 cut(s) 652, 736, 770, 903
Bse118I RCCGGY 2 cut(s) 320, 590
Bse1I ACTGG 1 cut(s) 775
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 5 cut(s) 234, 422, 587, 596, 732
BseDI CCNNGG 7 cut(s) 223, 421, 438, 553, 585, 646, 730
BseGI GGATG 6 cut(s) 163, 262, 306, 469, 581, 838
BseLI CCNNNNNNNGG 4 cut(s) 652, 736, 770, 903
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 1 cut(s) 929
BseNI ACTGG 1 cut(s) 775
BsePI GCGCGC 1 cut(s) 270
BseRI GAGGAG 7 cut(s) 90, 93, 108, 266, 401, 455, 903
BseSI GKGCMC 1 cut(s) 561
BseX3I CGGCCG 1 cut(s) 758
BseXI GCAGC 1 cut(s) 679
BseYI CCCAGC 1 cut(s) 902
Bsh1236I CGCG 4 cut(s) 270, 272, 357, 572
Bsh1285I CGRYCG 2 cut(s) 570, 761
BshFI GGCC 8 cut(s) 149, 228, 237, 559, 590, 594, 620, 760
BsiEI CGRYCG 2 cut(s) 570, 761
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 2 cut(s) 287, 446
BsiSI CCGG 5 cut(s) 15, 146, 196, 321, 591
BslFI GGGAC 2 cut(s) 381, 512
BslI CCNNNNNNNGG 4 cut(s) 652, 736, 770, 903
BsmAI GTCTC 3 cut(s) 222, 263, 915
BsmFI GGGAC 2 cut(s) 381, 512
BsnI GGCC 8 cut(s) 149, 228, 237, 559, 590, 594, 620, 760
Bso31I GGTCTC 1 cut(s) 222
BsoBI CYCGRG 2 cut(s) 287, 446
Bsp120I GGGCCC 1 cut(s) 557
Bsp1286I GDGCHC 3 cut(s) 447, 561, 645
Bsp143I GATC 3 cut(s) 411, 513, 567
BspANI GGCC 8 cut(s) 149, 228, 237, 559, 590, 594, 620, 760
BspCNI CTCAG 1 cut(s) 928
BspFNI CGCG 4 cut(s) 270, 272, 357, 572
BspLI GGNNCC 7 cut(s) 150, 203, 396, 397, 559, 560, 644
BspMAI CTGCAG 1 cut(s) 669
BspMI ACCTGC 1 cut(s) 944
BspTNI GGTCTC 1 cut(s) 222
BsrBI CCGCTC 2 cut(s) 110, 564
BsrDI GCAATG 1 cut(s) 891
BsrFI RCCGGY 2 cut(s) 320, 590
BsrI ACTGG 1 cut(s) 775
BssAI RCCGGY 2 cut(s) 320, 590
BssECI CCNNGG 7 cut(s) 223, 421, 438, 553, 585, 646, 730
BssHII GCGCGC 1 cut(s) 270
BssMI GATC 3 cut(s) 411, 513, 567
BssNAI GTATAC 1 cut(s) 1002
BssNI GRCGYC 2 cut(s) 351, 366
BssT1I CCWWGG 1 cut(s) 223
Bst1107I GTATAC 1 cut(s) 1002
Bst2UI CCWGG 5 cut(s) 234, 422, 587, 596, 732
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 3 cut(s) 126, 738, 815
BstACI GRCGYC 2 cut(s) 351, 366
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 5 cut(s) 112, 272, 592, 631, 1023
BstDEI CTNAG 1 cut(s) 915
BstDSI CCRYGG 2 cut(s) 553, 646
BstF5I GGATG 6 cut(s) 163, 262, 306, 469, 581, 838
BstFNI CGCG 4 cut(s) 270, 272, 357, 572
BstHHI GCGC 4 cut(s) 252, 272, 274, 574
BstKTI GATC 3 cut(s) 414, 516, 570
BstMAI GTCTC 3 cut(s) 222, 263, 915
BstMBI GATC 3 cut(s) 411, 513, 567
BstMCI CGRYCG 2 cut(s) 570, 761
BstMWI GCNNNNNNNGC 6 cut(s) 234, 451, 626, 763, 803, 824
BstNI CCWGG 5 cut(s) 234, 422, 587, 596, 732
BstSCI CCNGG 6 cut(s) 14, 232, 420, 585, 594, 730
BstSFI CTRYAG 1 cut(s) 665
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 4 cut(s) 270, 272, 357, 572
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 525
BstZ17I GTATAC 1 cut(s) 1002
BstZI CGGCCG 1 cut(s) 758
BsuRI GGCC 8 cut(s) 149, 228, 237, 559, 590, 594, 620, 760
BtgI CCRYGG 2 cut(s) 553, 646
BtgZI GCGATG 1 cut(s) 812
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 6 cut(s) 163, 262, 306, 469, 581, 838
BtsI GCAGTG 2 cut(s) 387, 897
BtsIMutI CAGTG 3 cut(s) 387, 897, 995
BveI ACCTGC 1 cut(s) 944
Cac8I GCNNGC 5 cut(s) 112, 272, 592, 631, 1023
CciNI GCGGCCGC 1 cut(s) 758
CfoI GCGC 4 cut(s) 252, 272, 274, 574
Cfr10I RCCGGY 2 cut(s) 320, 590
Cfr13I GGNCC 8 cut(s) 80, 148, 227, 395, 550, 557, 558, 1038
CseI GACGC 2 cut(s) 374, 530
Csp6I GTAC 1 cut(s) 27
CviAII CATG 2 cut(s) 478, 511
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 915
DpnI GATC 3 cut(s) 413, 515, 569
DpnII GATC 3 cut(s) 411, 513, 567
EaeI YGGCCR 2 cut(s) 592, 758
EagI CGGCCG 1 cut(s) 758
Eam1104I CTCTTC 3 cut(s) 126, 738, 815
EarI CTCTTC 3 cut(s) 126, 738, 815
EciI GGCGGA 2 cut(s) 93, 616
Ecl136II GAGCTC 1 cut(s) 445
EclXI CGGCCG 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 3 cut(s) 447, 561, 645
Eco31I GGTCTC 1 cut(s) 222
Eco47I GGWCC 4 cut(s) 80, 395, 550, 1038
Eco52I CGGCCG 1 cut(s) 758
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 762
Eco72I CACGTG 1 cut(s) 185
Eco88I CYCGRG 2 cut(s) 287, 446
EcoICRI GAGCTC 1 cut(s) 445
EcoO109I RGGNCCY 3 cut(s) 395, 558, 1038
EcoRII CCWGG 5 cut(s) 232, 420, 585, 594, 730
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 3 cut(s) 447, 561, 645
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 481, 514
FaiI YATR 7 cut(s) 141, 479, 512, 779, 932, 1002, 1010
FaqI GGGAC 2 cut(s) 381, 512
FatI CATG 2 cut(s) 477, 510
FauI CCCGC 4 cut(s) 115, 385, 569, 720
FblI GTMKAC 1 cut(s) 1001
Fnu4HI GCNGC 6 cut(s) 238, 345, 668, 758, 761, 764
FokI GGATG 6 cut(s) 150, 249, 293, 476, 568, 845
FriOI GRGCYC 3 cut(s) 447, 561, 645
FseI GGCCGGCC 1 cut(s) 594
Fsp4HI GCNGC 6 cut(s) 238, 345, 668, 758, 761, 764
GlaI GCGC 4 cut(s) 251, 271, 273, 573
GluI GCNGC 6 cut(s) 238, 345, 668, 758, 761, 764
GsaI CCCAGC 1 cut(s) 906
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 8 cut(s) 149, 228, 237, 559, 590, 594, 620, 760
HapII CCGG 5 cut(s) 15, 146, 196, 321, 591
HgaI GACGC 2 cut(s) 374, 530
HhaI GCGC 4 cut(s) 252, 272, 274, 574
Hin1I GRCGYC 2 cut(s) 351, 366
Hin1II CATG 2 cut(s) 481, 514
Hin6I GCGC 4 cut(s) 250, 270, 272, 572
HinP1I GCGC 4 cut(s) 250, 270, 272, 572
HincII GTYRAC 1 cut(s) 161
HindII GTYRAC 1 cut(s) 161
HinfI GANTC 6 cut(s) 176, 211, 256, 490, 603, 785
HpaII CCGG 5 cut(s) 15, 146, 196, 321, 591
HphI GGTGA 4 cut(s) 185, 481, 499, 688
Hpy166II GTNNAC 4 cut(s) 29, 161, 418, 1002
Hpy188I TCNGA 3 cut(s) 495, 602, 918
Hpy188III TCNNGA 4 cut(s) 173, 415, 448, 686
Hpy8I GTNNAC 4 cut(s) 29, 161, 418, 1002
Hpy99I CGWCG 4 cut(s) 332, 353, 368, 437
HpyAV CCTTC 4 cut(s) 98, 370, 535, 869
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 5 cut(s) 136, 184, 330, 351, 696
HpyCH4V TGCA 3 cut(s) 667, 867, 953
HpyF10VI GCNNNNNNNGC 6 cut(s) 234, 451, 626, 763, 803, 824
HpyF3I CTNAG 1 cut(s) 915
HpySE526I ACGT 5 cut(s) 136, 184, 330, 351, 696
Hsp92I GRCGYC 2 cut(s) 351, 366
Hsp92II CATG 2 cut(s) 481, 514
HspAI GCGC 4 cut(s) 250, 270, 272, 572
KflI GGGWCCC 1 cut(s) 395
KroI GCCGGC 1 cut(s) 590
KroNI GCCGGC 1 cut(s) 592
Kzo9I GATC 3 cut(s) 411, 513, 567
LmnI GCTCC 5 cut(s) 207, 279, 442, 501, 648
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 2 cut(s) 72, 333
MaeII ACGT 5 cut(s) 136, 184, 330, 351, 696
MalI GATC 3 cut(s) 413, 515, 569
MbiI CCGCTC 2 cut(s) 110, 564
MboI GATC 3 cut(s) 411, 513, 567
MboII GAAGA 7 cut(s) 113, 331, 530, 550, 755, 821, 832
MhlI GDGCHC 3 cut(s) 447, 561, 645
MlyI GAGTC 2 cut(s) 265, 794
MmeI TCCRAC 1 cut(s) 580
MroNI GCCGGC 1 cut(s) 590
MseI TTAA 1 cut(s) 840
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 208, 766
MspI CCGG 5 cut(s) 15, 146, 196, 321, 591
MspR9I CCNGG 6 cut(s) 16, 234, 422, 587, 596, 732
MvaI CCWGG 5 cut(s) 234, 422, 587, 596, 732
MvnI CGCG 4 cut(s) 270, 272, 357, 572
MwoI GCNNNNNNNGC 6 cut(s) 234, 451, 626, 763, 803, 824
NaeI GCCGGC 1 cut(s) 592
NciI CCSGG 1 cut(s) 16
NdeII GATC 3 cut(s) 411, 513, 567
NgoMIV GCCGGC 1 cut(s) 590
NlaIII CATG 2 cut(s) 481, 514
NlaIV GGNNCC 7 cut(s) 150, 203, 396, 397, 559, 560, 644
NmeAIII GCCGAG 1 cut(s) 463
NotI GCGGCCGC 1 cut(s) 758
PaeR7I CTCGAG 2 cut(s) 287, 446
PaqCI CACCTGC 1 cut(s) 944
PauI GCGCGC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 5 cut(s) 285, 348, 528, 693, 794
PdiI GCCGGC 1 cut(s) 592
PfeI GAWTC 4 cut(s) 176, 211, 490, 603
PflFI GACNNNGTC 1 cut(s) 524
PkrI GCNGC 6 cut(s) 239, 346, 669, 759, 762, 765
Ple19I CGATCG 1 cut(s) 570
PleI GAGTC 2 cut(s) 264, 793
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 2 cut(s) 264, 793
Ppu21I YACGTR 1 cut(s) 185
PpuMI RGGWCCY 2 cut(s) 395, 1038
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 2 cut(s) 395, 1038
Psp6I CCWGG 5 cut(s) 232, 420, 585, 594, 730
PspCI CACGTG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 5 cut(s) 232, 420, 585, 594, 730
PspN4I GGNNCC 7 cut(s) 150, 203, 396, 397, 559, 560, 644
PspOMI GGGCCC 1 cut(s) 557
PspPI GGNCC 8 cut(s) 80, 148, 227, 395, 550, 557, 558, 1038
PspPPI RGGWCCY 2 cut(s) 395, 1038
PspXI VCTCGAGB 1 cut(s) 287
PstI CTGCAG 1 cut(s) 669
PsyI GACNNNGTC 1 cut(s) 524
PteI GCGCGC 1 cut(s) 270
PvuI CGATCG 1 cut(s) 570
RigI GGCCGGCC 1 cut(s) 594
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 840
SatI GCNGC 6 cut(s) 238, 345, 668, 758, 761, 764
Sau3AI GATC 3 cut(s) 411, 513, 567
Sau96I GGNCC 8 cut(s) 80, 148, 227, 395, 550, 557, 558, 1038
SchI GAGTC 2 cut(s) 265, 794
ScrFI CCNGG 6 cut(s) 16, 234, 422, 587, 596, 732
SduI GDGCHC 3 cut(s) 447, 561, 645
SfaNI GCATC 2 cut(s) 72, 333
SfcI CTRYAG 1 cut(s) 665
SfiI GGCCNNNNNGGCC 1 cut(s) 234
Sfr274I CTCGAG 2 cut(s) 287, 446
SinI GGWCC 4 cut(s) 80, 395, 550, 1038
SlaI CTCGAG 2 cut(s) 287, 446
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 287, 446
SmoI CTYRAG 2 cut(s) 287, 446
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 6 cut(s) 14, 232, 420, 585, 594, 730
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 5 cut(s) 139, 187, 333, 354, 699
TaqI TCGA 8 cut(s) 279, 288, 327, 374, 402, 447, 516, 566
TaqII GACCGA 1 cut(s) 204
TauI GCSGC 5 cut(s) 240, 347, 760, 763, 766
TfiI GAWTC 4 cut(s) 176, 211, 490, 603
Tru1I TTAA 1 cut(s) 840
Tru9I TTAA 1 cut(s) 840
TscAI CASTG 3 cut(s) 387, 904, 995
TseI GCWGC 1 cut(s) 667
TspDTI ATGAA 4 cut(s) 179, 466, 551, 815
TspGWI ACGGA 3 cut(s) 58, 258, 635
TspRI CASTG 3 cut(s) 387, 904, 995
Tth111I GACNNNGTC 1 cut(s) 524
VpaK11BI GGWCC 4 cut(s) 80, 395, 550, 1038
XhoI CTCGAG 2 cut(s) 287, 446
XmiI GTMKAC 1 cut(s) 1001
ZraI GACGTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.