Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

40344924 .. 40347387

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG209100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGACTTTGTTTGATGCGGCATTATTTGATGCTCACTGTTGTCCTTATTTGGCTTCTGAAAAAACTAAGAAGAGGCCGCAGCTGACCAGCATTATTGCGGAATCATCTGGTGCAATGAAAGCCGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCCATTGCCACTGCCGGGTTGTCGCCTCAGAGATCATTCCTCATGGCATTTGTGGAGGTGGTTGCTGCTGGTGTAATAAGGATAGCTGCTCTGGGATTTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

120

Amino Acids

13.12

Weight (kDa)

9.12

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	320, 328
AciI	CCGC	3 cut(s)	20, 80, 101
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	3 cut(s)	85, 146, 293
AluI	AGCT	3 cut(s)	85, 146, 293
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	82, 272, 293
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	94, 259, 280
BccI	CCATC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BcnI	CCSGG	1 cut(s)	223
BisI	GCNGC	5 cut(s)	21, 80, 83, 273, 294
BlsI	GCNGC	5 cut(s)	22, 81, 84, 274, 295
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	7, 22
BpuMI	CCSGG	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse3DI	GCAATG	2 cut(s)	123, 210
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	2 cut(s)	123, 210
BseMII	CTCAG	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	94, 259, 280
BshFI	GGCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	222
BsnI	GGCC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	239
BspACI	CCGC	3 cut(s)	20, 80, 101
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	247
BsrDI	GCAATG	2 cut(s)	123, 210
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	239
BssNAI	GTATAC	2 cut(s)	321, 329
Bst1107I	GTATAC	2 cut(s)	321, 329
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	69, 234
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 143
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	94, 259, 280
BstZ17I	GTATAC	2 cut(s)	321, 329
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	37, 216, 314
Cfr13I	GGNCC	1 cut(s)	357
CviAII	CATG	2 cut(s)	250, 341
CviJI	RGCY	7 cut(s)	56, 79, 85, 125, 146, 199, 293
CviKI_1	RGCY	7 cut(s)	56, 79, 85, 125, 146, 199, 293
DdeI	CTNAG	2 cut(s)	69, 234
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	357
FaeI	CATG	2 cut(s)	253, 344
FaiI	YATR	4 cut(s)	251, 321, 329, 342
FatI	CATG	2 cut(s)	249, 340
FblI	GTMKAC	2 cut(s)	320, 328
Fnu4HI	GCNGC	5 cut(s)	21, 80, 83, 273, 294
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	5 cut(s)	21, 80, 83, 273, 294
GluI	GCNGC	5 cut(s)	21, 80, 83, 273, 294
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	2 cut(s)	253, 344
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	2 cut(s)	104, 156
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	321, 329
Hpy188I	TCNGA	2 cut(s)	61, 237
Hpy8I	GTNNAC	2 cut(s)	321, 329
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	116, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 143
HpyF3I	CTNAG	2 cut(s)	69, 234
Hsp92II	CATG	2 cut(s)	253, 344
Kzo9I	GATC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	96, 103, 235, 261, 284
Lsp1109I	GCAGC	3 cut(s)	94, 259, 280
LweI	GCATC	2 cut(s)	7, 22
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	2 cut(s)	85, 151
MluCI	AATT	1 cut(s)	313
MnlI	CCTC	5 cut(s)	69, 121, 243, 256, 257
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	122, 143
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	253, 344
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	104, 156
PkrI	GCNGC	5 cut(s)	22, 81, 84, 274, 295
PpuMI	RGGWCCY	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	357
PspPPI	RGGWCCY	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	85
SatI	GCNGC	5 cut(s)	21, 80, 83, 273, 294
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	5 cut(s)	87, 148, 267, 295, 362
SfaNI	GCATC	2 cut(s)	7, 22
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	20, 80, 101
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	41
TasI	AATT	1 cut(s)	313
TauI	GCSGC	2 cut(s)	23, 82
TfiI	GAWTC	2 cut(s)	104, 156
TscAI	CASTG	3 cut(s)	44, 223, 314
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	3 cut(s)	82, 272, 293
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	3 cut(s)	44, 223, 314
VpaK11BI	GGWCC	1 cut(s)	357
XmiI	GTMKAC	2 cut(s)	320, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.