Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000024.1

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

215 .. 2096

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000024.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggctgaccccaacctctccttgctctccctccttctcctcctcctccctctcgctctactcctcctcctctacctcatcgtccgcccccgccccgccactgtcccaatcaagaaccgccacgtcttcatcaccggtggatccagcggcatcggcctcgccctggcccaccgtgccgcctccgagggtgccagagtctccatccttgcacgctcccttgacaagctcgaggaggccaagaactacatccagctctccaccggcatcgatgtcgccgtctttgctgccgacgttcgcaactatgatgctgtttccaaggcggtcgaggcggctggcccgatcgatgtgttggtagtcaaccagggagtttttatccctggggagttggagaagcagggattggatgaggtcaggttcatggtggacgtcaatttgatcggtagcttcaacatgatcaaagctgctttgccaggaatgaaggacaggaaggaccgtggaccgggttcgattgctctgatgtcgtcgcaggccggtcaggttgggatttacggctacacggcttattccgcaagcaaatttgggcttcgaggtttggctgaagctctgcagcaagaggtcattacagacgacattcacgtttcactaattttccctccggatactgacactcctggactcactgaagaaactaagaagaggccgcagctgaccagcattatcgcagaatcctctggtgcaatgaaagctgaggaagttgctaagaaggctttggatggaatcaagtctgcgtcttttattatagagggtgggcaggctgcaggcttgctgcgttgggtggactgcgcaggcgcgggacgcaaggctgctgatgcgggggcagtagtgcggagggcgactgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

300

Amino Acids

31.6

Weight (kDa)

6.85

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	429
Acc16I	TGCGCA	1 cut(s)	844
AccB1I	GGYRCC	1 cut(s)	188
AccII	CGCG	1 cut(s)	851
AccIII	TCCGGA	1 cut(s)	655
AclWI	GGATC	2 cut(s)	135, 148
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	2 cut(s)	618, 702
AcyI	GRCGYC	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	163, 499
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	5 cut(s)	162, 360, 376, 469, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	7 cut(s)	226, 253, 444, 461, 602, 706, 746
AluI	AGCT	7 cut(s)	226, 253, 444, 461, 602, 706, 746
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	135, 148
Ama87I	CYCGRG	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	6 cut(s)	154, 165, 234, 334, 528, 698
ApeKI	GCWGC	7 cut(s)	284, 461, 607, 703, 815, 826, 863
ApoI	RAATTY	1 cut(s)	575
AsiGI	ACCGGT	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	845, 851
AspS9I	GGNCC	4 cut(s)	166, 335, 490, 497
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	490, 497
BamHI	GGATCC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	7 cut(s)	271, 448, 619, 715, 802, 813, 850
BccI	CCATC	2 cut(s)	209, 767
BceAI	ACGGC	3 cut(s)	260, 565, 573
BcgI	CGANNNNNNTGC	4 cut(s)	139, 173, 253, 287
BciT130I	CCWGG	5 cut(s)	164, 362, 378, 471, 672
BciVI	GTATCC	1 cut(s)	652
BclI	TGATCA	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	202
BfmI	CTRYAG	2 cut(s)	605, 816
BfuI	GTATCC	1 cut(s)	652
Bme1390I	CCNGG	6 cut(s)	164, 362, 378, 471, 501, 672
Bme18I	GGWCC	2 cut(s)	490, 497
BmeT110I	CYCGRG	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	4 cut(s)	166, 335, 490, 497
BmiI	GGNNCC	2 cut(s)	142, 190
BmrFI	CCNGG	6 cut(s)	164, 362, 378, 471, 501, 672
BmsI	GCATC	4 cut(s)	159, 273, 295, 859
BpiI	GAAGAC	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	747
BpuMI	CCSGG	1 cut(s)	501
Bsa29I	ATCGAT	2 cut(s)	267, 342
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	7 cut(s)	162, 183, 315, 361, 376, 377, 493
BsaWI	WCCGGW	2 cut(s)	134, 655
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 652, 682
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 499
Bse118I	RCCGGY	3 cut(s)	134, 260, 530
Bse1I	ACTGG	1 cut(s)	901
Bse3DI	GCAATG	1 cut(s)	744
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	5 cut(s)	164, 362, 378, 471, 672
BseCI	ATCGAT	2 cut(s)	267, 342
BseDI	CCNNGG	7 cut(s)	162, 183, 315, 361, 376, 377, 493
BseGI	GGATG	4 cut(s)	201, 246, 409, 778
BseLI	CCNNNNNNNGG	2 cut(s)	163, 499
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	1 cut(s)	901
BseRI	GAGGAG	7 cut(s)	29, 32, 35, 53, 56, 59, 245
BseXI	GCAGC	7 cut(s)	271, 448, 619, 715, 802, 813, 850
Bsh1236I	CGCG	1 cut(s)	851
Bsh1285I	CGRYCG	2 cut(s)	324, 342
BshFI	GGCC	6 cut(s)	156, 167, 236, 336, 530, 700
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	134
BshVI	ATCGAT	2 cut(s)	267, 342
BsiEI	CGRYCG	2 cut(s)	324, 342
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	5 cut(s)	135, 261, 500, 531, 656
BslFI	GGGAC	2 cut(s)	89, 867
BslI	CCNNNNNNNGG	2 cut(s)	163, 499
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	89, 867
BsnI	GGCC	6 cut(s)	156, 167, 236, 336, 530, 700
BsoBI	CYCGRG	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	140, 339, 435, 453
BspANI	GGCC	6 cut(s)	156, 167, 236, 336, 530, 700
BspCNI	CTCAG	1 cut(s)	739
BspDI	ATCGAT	2 cut(s)	267, 342
BspEI	TCCGGA	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	851
BspLI	GGNNCC	2 cut(s)	142, 190
BspMAI	CTGCAG	2 cut(s)	609, 820
BspPI	GGATC	2 cut(s)	135, 148
BspT107I	GGYRCC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	3 cut(s)	134, 260, 530
BsrI	ACTGG	1 cut(s)	901
BssAI	RCCGGY	3 cut(s)	134, 260, 530
BssECI	CCNNGG	7 cut(s)	162, 183, 315, 361, 376, 377, 493
BssMI	GATC	4 cut(s)	140, 339, 435, 453
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	5 cut(s)	164, 362, 378, 471, 672
Bst4CI	ACNGT	3 cut(s)	103, 173, 494
Bst6I	CTCTTC	1 cut(s)	689
BstACI	GRCGYC	1 cut(s)	426
BstC8I	GCNNGC	8 cut(s)	211, 334, 528, 571, 813, 820, 824, 847
BstDEI	CTNAG	3 cut(s)	690, 747, 759
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	4 cut(s)	201, 246, 409, 778
BstFNI	CGCG	1 cut(s)	851
BstHHI	GCGC	2 cut(s)	845, 851
BstKTI	GATC	4 cut(s)	143, 342, 438, 456
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	4 cut(s)	140, 339, 435, 453
BstMCI	CGRYCG	2 cut(s)	324, 342
BstMWI	GCNNNNNNNGC	9 cut(s)	153, 173, 281, 326, 566, 743, 764, 855, 869
BstNI	CCWGG	5 cut(s)	164, 362, 378, 471, 672
BstSCI	CCNGG	6 cut(s)	162, 360, 376, 469, 499, 670
BstSFI	CTRYAG	2 cut(s)	605, 816
BstUI	CGCG	1 cut(s)	851
BstV1I	GCAGC	7 cut(s)	271, 448, 619, 715, 802, 813, 850
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu15I	ATCGAT	2 cut(s)	267, 342
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	6 cut(s)	156, 167, 236, 336, 530, 700
BsuTUI	ATCGAT	2 cut(s)	267, 342
BtgI	CCRYGG	1 cut(s)	493
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	4 cut(s)	201, 246, 409, 778
BtsIMutI	CAGTG	2 cut(s)	99, 678
Cac8I	GCNNGC	8 cut(s)	211, 334, 528, 571, 813, 820, 824, 847
CfoI	GCGC	2 cut(s)	845, 851
Cfr10I	RCCGGY	3 cut(s)	134, 260, 530
Cfr13I	GGNCC	4 cut(s)	166, 335, 490, 497
ClaI	ATCGAT	2 cut(s)	267, 342
CseI	GACGC	2 cut(s)	777, 864
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	2 cut(s)	418, 451
DdeI	CTNAG	3 cut(s)	690, 747, 759
DpnI	GATC	4 cut(s)	142, 341, 437, 455
DpnII	GATC	4 cut(s)	140, 339, 435, 453
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	490, 497
Eco57I	CTGAAG	2 cut(s)	618, 702
Eco88I	CYCGRG	1 cut(s)	227
EcoRII	CCWGG	5 cut(s)	162, 360, 376, 469, 670
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	421, 454
FaiI	YATR	4 cut(s)	303, 419, 452, 800
FaqI	GGGAC	2 cut(s)	89, 867
FatI	CATG	2 cut(s)	417, 450
FauI	CCCGC	4 cut(s)	98, 103, 844, 865
FbaI	TGATCA	1 cut(s)	453
FokI	GGATG	4 cut(s)	188, 233, 416, 785
FspI	TGCGCA	1 cut(s)	844
GlaI	GCGC	2 cut(s)	844, 850
HaeIII	GGCC	6 cut(s)	156, 167, 236, 336, 530, 700
HapII	CCGG	5 cut(s)	135, 261, 500, 531, 656
HgaI	GACGC	2 cut(s)	777, 864
HhaI	GCGC	2 cut(s)	845, 851
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	421, 454
Hin6I	GCGC	2 cut(s)	843, 849
HinP1I	GCGC	2 cut(s)	843, 849
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	4 cut(s)	195, 675, 725, 777
HpaII	CCGG	5 cut(s)	135, 261, 500, 531, 656
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	4 cut(s)	358, 424, 497, 838
Hpy188I	TCNGA	2 cut(s)	184, 516
Hpy188III	TCNNGA	2 cut(s)	112, 656
Hpy8I	GTNNAC	4 cut(s)	358, 424, 497, 838
Hpy99I	CGWCG	2 cut(s)	293, 526
HpyAV	CCTTC	4 cut(s)	44, 472, 481, 757
HpyCH4III	ACNGT	3 cut(s)	103, 173, 494
HpyCH4IV	ACGT	4 cut(s)	123, 291, 426, 636
HpyCH4V	TGCA	4 cut(s)	209, 607, 737, 818
HpyF10VI	GCNNNNNNNGC	9 cut(s)	153, 173, 281, 326, 566, 743, 764, 855, 869
HpyF3I	CTNAG	3 cut(s)	690, 747, 759
HpySE526I	ACGT	4 cut(s)	123, 291, 426, 636
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	421, 454
HspAI	GCGC	2 cut(s)	843, 849
Kpn2I	TCCGGA	1 cut(s)	655
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	140, 339, 435, 453
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	7 cut(s)	271, 448, 619, 715, 802, 813, 850
LweI	GCATC	4 cut(s)	159, 273, 295, 859
MaeII	ACGT	4 cut(s)	123, 291, 426, 636
MalI	GATC	4 cut(s)	142, 341, 437, 455
MboI	GATC	4 cut(s)	140, 339, 435, 453
MboII	GAAGA	3 cut(s)	118, 695, 706
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	3 cut(s)	430, 575, 645
MlyI	GAGTC	2 cut(s)	204, 669
MmeI	TCCRAC	1 cut(s)	366
MroI	TCCGGA	1 cut(s)	655
MspA1I	CMGCKG	2 cut(s)	147, 706
MspI	CCGG	5 cut(s)	135, 261, 500, 531, 656
MspR9I	CCNGG	6 cut(s)	164, 362, 378, 471, 501, 672
MvaI	CCWGG	5 cut(s)	164, 362, 378, 471, 672
MvnI	CGCG	1 cut(s)	851
MwoI	GCNNNNNNNGC	9 cut(s)	153, 173, 281, 326, 566, 743, 764, 855, 869
NciI	CCSGG	1 cut(s)	501
NdeII	GATC	4 cut(s)	140, 339, 435, 453
NlaIII	CATG	2 cut(s)	421, 454
NlaIV	GGNNCC	2 cut(s)	142, 190
NsbI	TGCGCA	1 cut(s)	844
PaeR7I	CTCGAG	1 cut(s)	227
PasI	CCCWGGG	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 633
PfeI	GAWTC	2 cut(s)	725, 777
PfoI	TCCNGGA	1 cut(s)	670
PinAI	ACCGGT	1 cut(s)	134
Ple19I	CGATCG	1 cut(s)	342
PleI	GAGTC	2 cut(s)	203, 669
PpsI	GAGTC	2 cut(s)	203, 669
Psp6I	CCWGG	5 cut(s)	162, 360, 376, 469, 670
PspGI	CCWGG	5 cut(s)	162, 360, 376, 469, 670
PspN4I	GGNNCC	2 cut(s)	142, 190
PspPI	GGNCC	4 cut(s)	166, 335, 490, 497
PspXI	VCTCGAGB	1 cut(s)	227
PstI	CTGCAG	2 cut(s)	609, 820
PsuI	RGATCY	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	706
Sau3AI	GATC	4 cut(s)	140, 339, 435, 453
Sau96I	GGNCC	4 cut(s)	166, 335, 490, 497
SchI	GAGTC	2 cut(s)	204, 669
ScrFI	CCNGG	6 cut(s)	164, 362, 378, 471, 501, 672
SfaNI	GCATC	4 cut(s)	159, 273, 295, 859
SfcI	CTRYAG	2 cut(s)	605, 816
Sfr274I	CTCGAG	1 cut(s)	227
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	490, 497
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	430, 575, 645
StyD4I	CCNGG	6 cut(s)	162, 360, 376, 469, 499, 670
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	103, 173, 494
TaiI	ACGT	4 cut(s)	126, 294, 429, 639
TaqI	TCGA	6 cut(s)	228, 267, 324, 342, 506, 586
TasI	AATT	3 cut(s)	430, 575, 645
TauI	GCSGC	4 cut(s)	150, 179, 332, 703
TfiI	GAWTC	2 cut(s)	725, 777
TscAI	CASTG	2 cut(s)	106, 685
TseI	GCWGC	7 cut(s)	284, 461, 607, 703, 815, 826, 863
TspDTI	ATGAA	4 cut(s)	118, 406, 491, 755
TspRI	CASTG	2 cut(s)	106, 685
VpaK11BI	GGWCC	2 cut(s)	490, 497
XapI	RAATTY	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	227
ZraI	GACGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.