Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

26043073 .. 26044100

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0148300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGCTCGCCGGACTCAAATCAATCGACGACGCTCACGACGAGTCAGTATGGGCCGTCACCTGGGTTCCGGCGACCGAAGCCCGACCGGCTTTGTTGTTAACCGGGTCACTCGACGAGACCGTTCGGCTATGGCAACCGGACGAGTTGGTGAACCGGGGAAAGATGACCGGACACTGCCTCGGCGTGGCTTCCGTGGCGGCTCACCCCTTGGGCTTCATCGCCGCCTCTGCTTCGCTTGATAGCTTCGTTAGGATCTTCGACGTTGACTCCAACACCACCATCGCCAGTTTCGAGGCGCCGCCCTCCGAAGTCTGGCAATTACGCTTCAATCCCCAGGGTACCATGCTAGCCGCGGCTGGTGGTGGCAGTGCCTCAGTAAAGGTCTGGGACACCAGCACGTGGAACCTGGTTGCCACATTGTCGATTCCTCGCCCAGAAGGAACCAAGCCTGCTGACAAAAGCGCAGCAAGAAGTTTGTGCTATCGGTTGCCTGGAGTCCTGATGGGAGACGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

172

Amino Acids

18.25

Weight (kDa)

5.28

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	7 - 88	3.1e-06	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	11 - 145	6.6e-08	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	12 - 142	5.7e-20	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	12 - 131	8.4e-14	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	13 - 139	3.1e-18	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	13 - 141	5.2e-18	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	15 - 139	1.5e-09	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	25 - 137	1.6e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	31 - 145	4.3e-10	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	32 - 122	7.6e-06	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	298, 341
AccB7I	CCANNNNNTGG	1 cut(s)	402
AccII	CGCG	1 cut(s)	356
AciI	CCGC	5 cut(s)	200, 225, 302, 354, 356
AclWI	GGATC	1 cut(s)	263
AcvI	CACGTG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	4 cut(s)	63, 187, 315, 402
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	4 cut(s)	62, 336, 408, 493
AluBI	AGCT	2 cut(s)	7, 246
AluI	AGCT	2 cut(s)	7, 246
Alw26I	GTCTC	2 cut(s)	113, 504
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	467
Asp718I	GGTACC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	301, 467
AspS9I	GGNCC	1 cut(s)	54
AsuC2I	CCSGG	2 cut(s)	106, 158
AsuHPI	GGTGA	3 cut(s)	52, 163, 197
AsuNHI	GCTAGC	1 cut(s)	349
BanI	GGYRCC	2 cut(s)	298, 341
BbrPI	CACGTG	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	2 cut(s)	290, 499
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	4 cut(s)	64, 338, 410, 495
BcnI	CCSGG	2 cut(s)	106, 158
BcoDI	GTCTC	2 cut(s)	113, 504
BfaI	CTAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	6 cut(s)	201, 225, 302, 354, 357, 468
BlsI	GCNGC	6 cut(s)	202, 226, 303, 355, 358, 469
Bme1390I	CCNGG	6 cut(s)	64, 106, 158, 338, 410, 495
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	5 cut(s)	69, 300, 343, 407, 445
BmrFI	CCNGG	6 cut(s)	64, 106, 158, 338, 410, 495
BmtI	GCTAGC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	516
BpuMI	CCSGG	2 cut(s)	106, 158
BsaAI	YACGTR	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	8 cut(s)	63, 157, 181, 195, 210, 336, 337, 354
BsaWI	WCCGGW	2 cut(s)	139, 170
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 187, 315, 402
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	288
BseBI	CCWGG	4 cut(s)	64, 338, 410, 495
BseDI	CCNNGG	8 cut(s)	63, 157, 181, 195, 210, 336, 337, 354
BseLI	CCNNNNNNNGG	4 cut(s)	63, 187, 315, 402
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	356
Bsh1285I	CGRYCG	2 cut(s)	78, 89
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	2 cut(s)	298, 341
BsiEI	CGRYCG	2 cut(s)	78, 89
BsiSI	CCGG	7 cut(s)	12, 71, 89, 105, 140, 157, 171
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	4 cut(s)	63, 187, 315, 402
BsmAI	GTCTC	2 cut(s)	113, 504
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	5 cut(s)	200, 225, 302, 354, 356
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	5 cut(s)	69, 300, 343, 407, 445
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	2 cut(s)	298, 341
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	8 cut(s)	63, 157, 181, 195, 210, 336, 337, 354
BssMI	GATC	1 cut(s)	255
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	4 cut(s)	64, 338, 410, 495
Bst4CI	ACNGT	1 cut(s)	124
BstACI	GRCGYC	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	9, 351, 453
BstDEI	CTNAG	1 cut(s)	376
BstDSI	CCRYGG	2 cut(s)	195, 354
BstFNI	CGCG	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	2 cut(s)	301, 467
BstKTI	GATC	1 cut(s)	258
BstMAI	GTCTC	2 cut(s)	113, 504
BstMBI	GATC	1 cut(s)	255
BstMCI	CGRYCG	2 cut(s)	78, 89
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 89, 197, 230
BstNI	CCWGG	4 cut(s)	64, 338, 410, 495
BstSCI	CCNGG	6 cut(s)	62, 104, 156, 336, 408, 493
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	2 cut(s)	195, 354
BtgZI	GCGATG	2 cut(s)	205, 268
BtsI	GCAGTG	2 cut(s)	175, 376
BtsIMutI	CAGTG	2 cut(s)	175, 376
Cac8I	GCNNGC	3 cut(s)	9, 351, 453
CfoI	GCGC	2 cut(s)	301, 467
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	54
Cfr42I	CCGCGG	1 cut(s)	357
CseI	GACGC	1 cut(s)	41
CsiI	ACCWGGT	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	1 cut(s)	346
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	376
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	113
Eco72I	CACGTG	1 cut(s)	402
EcoRII	CCWGG	4 cut(s)	62, 336, 408, 493
EcoT14I	CCWWGG	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	1 cut(s)	349
FaiI	YATR	4 cut(s)	52, 133, 347, 517
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	6 cut(s)	201, 225, 302, 354, 357, 468
Fsp4HI	GCNGC	6 cut(s)	201, 225, 302, 354, 357, 468
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	2 cut(s)	300, 466
GluI	GCNGC	6 cut(s)	201, 225, 302, 354, 357, 468
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	7 cut(s)	12, 71, 89, 105, 140, 157, 171
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	2 cut(s)	301, 467
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	2 cut(s)	299, 465
HinP1I	GCGC	2 cut(s)	299, 465
HincII	GTYRAC	2 cut(s)	102, 268
HindII	GTYRAC	2 cut(s)	102, 268
HinfI	GANTC	5 cut(s)	15, 44, 269, 427, 498
HpaI	GTTAAC	1 cut(s)	102
HpaII	CCGG	7 cut(s)	12, 71, 89, 105, 140, 157, 171
HphI	GGTGA	3 cut(s)	52, 163, 197
Hpy166II	GTNNAC	3 cut(s)	102, 154, 268
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	38, 502
Hpy8I	GTNNAC	3 cut(s)	102, 154, 268
Hpy99I	CGWCG	5 cut(s)	32, 35, 44, 119, 266
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	2 cut(s)	264, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 89, 197, 230
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	2 cut(s)	264, 401
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	2 cut(s)	299, 465
KasI	GGCGCC	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	345
KspAI	GTTAAC	1 cut(s)	102
KspI	CCGCGG	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	479
MabI	ACCWGGT	1 cut(s)	408
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	2 cut(s)	264, 401
MaeIII	GTNAC	2 cut(s)	58, 108
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	250
MflI	RGATCY	1 cut(s)	255
MluCI	AATT	1 cut(s)	320
Mly113I	GGCGCC	1 cut(s)	299
MlyI	GAGTC	4 cut(s)	9, 53, 263, 507
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	6 cut(s)	191, 238, 289, 316, 385, 441
MseI	TTAA	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	7 cut(s)	12, 71, 89, 105, 140, 157, 171
MspR9I	CCNGG	6 cut(s)	64, 106, 158, 338, 410, 495
MvaI	CCWGG	4 cut(s)	64, 338, 410, 495
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	4 cut(s)	80, 89, 197, 230
NarI	GGCGCC	1 cut(s)	299
NciI	CCSGG	2 cut(s)	106, 158
NdeII	GATC	1 cut(s)	255
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	5 cut(s)	69, 300, 343, 407, 445
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	58, 108
PasI	CCCWGGG	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	4 cut(s)	36, 39, 120, 291
PfeI	GAWTC	1 cut(s)	427
PflMI	CCANNNNNTGG	1 cut(s)	402
PkrI	GCNGC	6 cut(s)	202, 226, 303, 355, 358, 469
PleI	GAGTC	4 cut(s)	9, 52, 263, 506
PluTI	GGCGCC	1 cut(s)	302
PmaCI	CACGTG	1 cut(s)	402
PmlI	CACGTG	1 cut(s)	402
PpsI	GAGTC	4 cut(s)	9, 52, 263, 506
Ppu21I	YACGTR	1 cut(s)	402
Psp6I	CCWGG	4 cut(s)	62, 336, 408, 493
PspCI	CACGTG	1 cut(s)	402
PspGI	CCWGG	4 cut(s)	62, 336, 408, 493
PspN4I	GGNNCC	5 cut(s)	69, 300, 343, 407, 445
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SacII	CCGCGG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	6 cut(s)	201, 225, 302, 354, 357, 468
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	4 cut(s)	9, 53, 263, 507
ScrFI	CCNGG	6 cut(s)	64, 106, 158, 338, 410, 495
SetI	ASST	7 cut(s)	9, 65, 248, 267, 387, 404, 411
SexAI	ACCWGGT	1 cut(s)	408
SfoI	GGCGCC	1 cut(s)	300
Sfr303I	CCGCGG	1 cut(s)	357
SgrBI	CCGCGG	1 cut(s)	357
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	5 cut(s)	200, 225, 302, 354, 356
SspDI	GGCGCC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	6 cut(s)	62, 104, 156, 336, 408, 493
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	2 cut(s)	267, 404
TaqI	TCGA	5 cut(s)	27, 114, 261, 294, 425
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	320
TauI	GCSGC	5 cut(s)	203, 227, 304, 356, 359
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	182, 376
TseFI	GTSAC	2 cut(s)	58, 108
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	2 cut(s)	58, 108
TspDTI	ATGAA	2 cut(s)	17, 208
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	182, 376
Van91I	CCANNNNNTGG	1 cut(s)	402
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.