Rmu_sc0004540.1_g000023

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004540.1
Physical Location & Seq
Forward (+)
127633 .. 131917
4285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004540.1_g000023.1.cds

Sequence Viewer

Length: 1224 bp
atggccgaccccaacctctccttgctctccctccttctcctcctccctctcgctctcctcctcctcctctacctcatcgtccgcccccgccccgccactgtcccaatcaagaaccgccacgtcttcatcaccggtggatccagcggcatcggcctcgccctggcccaccgtgccgcctccgagggcgccagagtctccatccttgcacgctcccttgacaagcttgaggaggccaagaactacatccagctctccaccggcatcgatgtcgccgtctttgcagccgacgttcgcaactacgatgctgtttccaaggcggtcgaggcggctggcccgatcgatgtgttggtagtcaaccagggagtttttatccctggggagttggagaagcagggattggatgaggtcaggttcatggtggacgtcaatttgatcggtagcttcaacatgatcaaagctgctttgccaggaatgaaggacaggaaggaccgcggaccgggttcgattgctctgatgtcgtcgcaggccggtcaggttgggatttacggctacacggcttattccgctagcaaatttgggcttcgaggtttggctgaagctctgcagcaagaggtcattgcagacgacattcacgtttcactaattttccctccggatactgacactcctggactcactgaagaaactaagaagaggccgcagctgaccagcattatcgcggaatcctctggtgcaatgaaagctgaggaagttgctaagaaagctttggatggaatcaagtctgcgtcttttattgtaccttgcaactttgaagggcttttgttgtctattgccactgccgggttgtcacctcagagatcgttcattatggcatttgtggaggtggttgctgctggtataatacgtattgctgccctgggtcctgcactacctgttgacgtcattcagggcagttggggatggcaaaagtctcctgagatttctaaaggtgcttgggggcagcaaaatgcggatactacttcagaaggtacttgggagcagcaaaagcctgctgatggtttttctgtgggaacttggggacaggccaagttgtctaaaggtgcttggggggagaaaaagcctgctgatgcttcttctccaggcacttggggccggaaaaattctcttgatatttctaaaggcggattggggcagcaaaagcctgatacgacttctcaatgttag

Protein Analysis

407

Amino Acids

43.02

Weight (kDa)

6.37

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 426, 942
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 2 cut(s) 492, 719
AccIII TCCGGA 1 cut(s) 652
AclWI GGATC 2 cut(s) 132, 145
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 572, 1159
AcuI CTGAAG 3 cut(s) 615, 699, 1005
AcyI GRCGYC 3 cut(s) 186, 423, 939
AfaI GTAC 2 cut(s) 798, 1030
AfiI CCNNNNNNNGG 4 cut(s) 160, 496, 840, 1055
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 2 cut(s) 445, 812
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 7 cut(s) 159, 357, 373, 466, 667, 915, 1138
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 8 cut(s) 223, 250, 441, 458, 599, 703, 743, 764
AluI AGCT 8 cut(s) 223, 250, 441, 458, 599, 703, 743, 764
Alw26I GTCTC 2 cut(s) 199, 975
AlwI GGATC 2 cut(s) 132, 145
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 9 cut(s) 3, 151, 162, 231, 331, 525, 695, 1083, 1150
ApeKI GCWGC 9 cut(s) 281, 458, 604, 700, 890, 911, 1000, 1039, 1192
ApoI RAATTY 2 cut(s) 572, 1159
AsiGI ACCGGT 1 cut(s) 131
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 6 cut(s) 163, 332, 487, 494, 920, 1150
AsuC2I CCSGG 2 cut(s) 498, 841
AsuHPI GGTGA 2 cut(s) 121, 840
AsuNHI GCTAGC 1 cut(s) 566
AvaII GGWCC 3 cut(s) 487, 494, 920
BamHI GGATCC 1 cut(s) 137
BanI GGYRCC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 9 cut(s) 293, 445, 616, 712, 877, 898, 1012, 1051, 1204
BccI CCATC 4 cut(s) 206, 764, 954, 1049
BceAI ACGGC 3 cut(s) 257, 562, 570
BcgI CGANNNNNNTGC 4 cut(s) 136, 170, 250, 284
BciT130I CCWGG 7 cut(s) 161, 359, 375, 468, 669, 917, 1140
BciVI GTATCC 2 cut(s) 649, 1006
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 2 cut(s) 498, 841
BcoDI GTCTC 2 cut(s) 199, 975
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 602
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 2 cut(s) 649, 1006
Bme1390I CCNGG 9 cut(s) 161, 359, 375, 468, 498, 669, 841, 917, 1140
Bme18I GGWCC 3 cut(s) 487, 494, 920
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 6 cut(s) 163, 332, 487, 494, 920, 1150
BmiI GGNNCC 4 cut(s) 139, 187, 921, 1151
BmrFI CCNGG 9 cut(s) 161, 359, 375, 468, 498, 669, 841, 917, 1140
BmsI GCATC 4 cut(s) 156, 270, 292, 1117
BmtI GCTAGC 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 1122
Bpu10I CCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 498, 841
Bsa29I ATCGAT 2 cut(s) 264, 339
BsaAI YACGTR 1 cut(s) 905
BsaHI GRCGYC 3 cut(s) 186, 423, 939
BsaJI CCNNGG 9 cut(s) 159, 180, 312, 358, 373, 374, 490, 915, 916
BsaWI WCCGGW 2 cut(s) 131, 652
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bsc4I CCNNNNNNNGG 4 cut(s) 160, 496, 840, 1055
Bse118I RCCGGY 3 cut(s) 131, 257, 527
Bse3DI GCAATG 2 cut(s) 615, 741
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 7 cut(s) 161, 359, 375, 468, 669, 917, 1140
BseCI ATCGAT 2 cut(s) 264, 339
BseDI CCNNGG 9 cut(s) 159, 180, 312, 358, 373, 374, 490, 915, 916
BseGI GGATG 5 cut(s) 198, 243, 406, 775, 965
BseLI CCNNNNNNNGG 4 cut(s) 160, 496, 840, 1055
BseMI GCAATG 2 cut(s) 615, 741
BseMII CTCAG 3 cut(s) 735, 866, 966
BseRI GAGGAG 7 cut(s) 29, 32, 47, 50, 53, 56, 242
BseXI GCAGC 9 cut(s) 293, 445, 616, 712, 877, 898, 1012, 1051, 1204
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 2 cut(s) 492, 719
Bsh1285I CGRYCG 2 cut(s) 321, 339
BshFI GGCC 9 cut(s) 5, 153, 164, 233, 333, 527, 697, 1085, 1152
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 131
BshVI ATCGAT 2 cut(s) 264, 339
BsiEI CGRYCG 2 cut(s) 321, 339
BsiSI CCGG 7 cut(s) 132, 258, 497, 528, 653, 840, 1153
BslFI GGGAC 2 cut(s) 86, 1092
BslI CCNNNNNNNGG 4 cut(s) 160, 496, 840, 1055
BsmAI GTCTC 2 cut(s) 199, 975
BsmFI GGGAC 2 cut(s) 86, 1092
BsnI GGCC 9 cut(s) 5, 153, 164, 233, 333, 527, 697, 1085, 1152
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 5 cut(s) 137, 336, 432, 450, 857
BspANI GGCC 9 cut(s) 5, 153, 164, 233, 333, 527, 697, 1085, 1152
BspCNI CTCAG 3 cut(s) 736, 865, 967
BspDI ATCGAT 2 cut(s) 264, 339
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 2 cut(s) 492, 719
BspLI GGNNCC 4 cut(s) 139, 187, 921, 1151
BspMAI CTGCAG 1 cut(s) 606
BspOI GCTAGC 1 cut(s) 570
BspPI GGATC 2 cut(s) 132, 145
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 615, 741
BsrFI RCCGGY 3 cut(s) 131, 257, 527
BssAI RCCGGY 3 cut(s) 131, 257, 527
BssECI CCNNGG 9 cut(s) 159, 180, 312, 358, 373, 374, 490, 915, 916
BssMI GATC 5 cut(s) 137, 336, 432, 450, 857
BssNI GRCGYC 3 cut(s) 186, 423, 939
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 7 cut(s) 161, 359, 375, 468, 669, 917, 1140
Bst4CI ACNGT 2 cut(s) 100, 170
Bst6I CTCTTC 1 cut(s) 686
BstACI GRCGYC 3 cut(s) 186, 423, 939
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 6 cut(s) 208, 331, 525, 568, 1050, 1122
BstDEI CTNAG 5 cut(s) 687, 744, 756, 852, 975
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 5 cut(s) 198, 243, 406, 775, 965
BstFNI CGCG 2 cut(s) 492, 719
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 5 cut(s) 140, 339, 435, 453, 860
BstMAI GTCTC 2 cut(s) 199, 975
BstMBI GATC 5 cut(s) 137, 336, 432, 450, 857
BstMCI CGRYCG 2 cut(s) 321, 339
BstNI CCWGG 7 cut(s) 161, 359, 375, 468, 669, 917, 1140
BstSCI CCNGG 9 cut(s) 159, 357, 373, 466, 496, 667, 839, 915, 1138
BstSFI CTRYAG 1 cut(s) 602
BstSNI TACGTA 1 cut(s) 905
BstUI CGCG 2 cut(s) 492, 719
BstV1I GCAGC 9 cut(s) 293, 445, 616, 712, 877, 898, 1012, 1051, 1204
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 1146
BstYI RGATCY 1 cut(s) 137
Bsu15I ATCGAT 2 cut(s) 264, 339
BsuI GTATCC 2 cut(s) 649, 1006
BsuRI GGCC 9 cut(s) 5, 153, 164, 233, 333, 527, 697, 1085, 1152
BsuTUI ATCGAT 2 cut(s) 264, 339
BtgI CCRYGG 1 cut(s) 490
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 5 cut(s) 198, 243, 406, 775, 965
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 96, 675, 834
Cac8I GCNNGC 6 cut(s) 208, 331, 525, 568, 1050, 1122
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 3 cut(s) 131, 257, 527
Cfr13I GGNCC 6 cut(s) 163, 332, 487, 494, 920, 1150
Cfr42I CCGCGG 1 cut(s) 493
ClaI ATCGAT 2 cut(s) 264, 339
CpoI CGGWCCG 1 cut(s) 494
CseI GACGC 1 cut(s) 774
Csp6I GTAC 2 cut(s) 797, 1029
CspAI ACCGGT 1 cut(s) 131
CspI CGGWCCG 1 cut(s) 494
CviAII CATG 2 cut(s) 415, 448
CviQI GTAC 2 cut(s) 797, 1029
DdeI CTNAG 5 cut(s) 687, 744, 756, 852, 975
DinI GGCGCC 1 cut(s) 187
DpnI GATC 5 cut(s) 139, 338, 434, 452, 859
DpnII GATC 5 cut(s) 137, 336, 432, 450, 857
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
EciI GGCGGA 2 cut(s) 71, 1197
Eco105I TACGTA 1 cut(s) 905
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 3 cut(s) 487, 494, 920
Eco57I CTGAAG 3 cut(s) 615, 699, 1005
EcoO109I RGGNCCY 1 cut(s) 920
EcoRII CCWGG 7 cut(s) 159, 357, 373, 466, 667, 915, 1138
EcoT14I CCWWGG 1 cut(s) 312
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 2 cut(s) 418, 451
FaiI YATR 4 cut(s) 416, 449, 869, 899
FaqI GGGAC 2 cut(s) 86, 1092
FatI CATG 2 cut(s) 414, 447
FauI CCCGC 2 cut(s) 95, 100
FbaI TGATCA 1 cut(s) 450
FokI GGATG 5 cut(s) 185, 230, 413, 782, 972
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 1122
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 9 cut(s) 5, 153, 164, 233, 333, 527, 697, 1085, 1152
HapII CCGG 7 cut(s) 132, 258, 497, 528, 653, 840, 1153
HgaI GACGC 1 cut(s) 774
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 3 cut(s) 186, 423, 939
Hin1II CATG 2 cut(s) 418, 451
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 2 cut(s) 355, 937
HindII GTYRAC 2 cut(s) 355, 937
HindIII AAGCTT 2 cut(s) 221, 762
HinfI GANTC 4 cut(s) 192, 672, 722, 774
HpaII CCGG 7 cut(s) 132, 258, 497, 528, 653, 840, 1153
HphI GGTGA 2 cut(s) 121, 840
Hpy166II GTNNAC 3 cut(s) 355, 421, 937
Hpy188I TCNGA 4 cut(s) 181, 513, 855, 1024
Hpy188III TCNNGA 4 cut(s) 109, 653, 974, 1166
Hpy8I GTNNAC 3 cut(s) 355, 421, 937
Hpy99I CGWCG 2 cut(s) 290, 523
HpyAV CCTTC 5 cut(s) 44, 469, 478, 806, 1019
HpyCH4III ACNGT 2 cut(s) 100, 170
HpyCH4IV ACGT 6 cut(s) 120, 288, 423, 633, 904, 939
HpyCH4V TGCA 7 cut(s) 206, 281, 604, 620, 734, 804, 926
HpyF3I CTNAG 5 cut(s) 687, 744, 756, 852, 975
HpySE526I ACGT 6 cut(s) 120, 288, 423, 633, 904, 939
Hsp92I GRCGYC 3 cut(s) 186, 423, 939
Hsp92II CATG 2 cut(s) 418, 451
HspAI GCGC 1 cut(s) 186
KasI GGCGCC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 450
KspI CCGCGG 1 cut(s) 493
Kzo9I GATC 5 cut(s) 137, 336, 432, 450, 857
LmnI GCTCC 2 cut(s) 215, 1036
Lsp1109I GCAGC 9 cut(s) 293, 445, 616, 712, 877, 898, 1012, 1051, 1204
LweI GCATC 4 cut(s) 156, 270, 292, 1117
MaeI CTAG 1 cut(s) 567
MaeII ACGT 6 cut(s) 120, 288, 423, 633, 904, 939
MaeIII GTNAC 1 cut(s) 846
MalI GATC 5 cut(s) 139, 338, 434, 452, 859
MboI GATC 5 cut(s) 137, 336, 432, 450, 857
MboII GAAGA 4 cut(s) 115, 692, 703, 1125
MflI RGATCY 1 cut(s) 137
MluCI AATT 4 cut(s) 427, 572, 642, 1159
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 2 cut(s) 201, 666
MmeI TCCRAC 1 cut(s) 363
MroI TCCGGA 1 cut(s) 652
MspA1I CMGCKG 3 cut(s) 144, 492, 703
MspI CCGG 7 cut(s) 132, 258, 497, 528, 653, 840, 1153
MspR9I CCNGG 9 cut(s) 161, 359, 375, 468, 498, 669, 841, 917, 1140
MvaI CCWGG 7 cut(s) 161, 359, 375, 468, 669, 917, 1140
MvnI CGCG 2 cut(s) 492, 719
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 2 cut(s) 498, 841
NdeII GATC 5 cut(s) 137, 336, 432, 450, 857
NheI GCTAGC 1 cut(s) 566
NlaIII CATG 2 cut(s) 418, 451
NlaIV GGNNCC 4 cut(s) 139, 187, 921, 1151
NmuCI GTSAC 1 cut(s) 846
PasI CCCWGGG 2 cut(s) 374, 916
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 630
PfeI GAWTC 2 cut(s) 722, 774
PfoI TCCNGGA 1 cut(s) 667
PinAI ACCGGT 1 cut(s) 131
Ple19I CGATCG 1 cut(s) 339
PleI GAGTC 2 cut(s) 200, 666
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 2 cut(s) 200, 666
Ppu21I YACGTR 1 cut(s) 905
PpuMI RGGWCCY 1 cut(s) 920
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 7 cut(s) 159, 357, 373, 466, 667, 915, 1138
PspGI CCWGG 7 cut(s) 159, 357, 373, 466, 667, 915, 1138
PspN4I GGNNCC 4 cut(s) 139, 187, 921, 1151
PspPI GGNCC 6 cut(s) 163, 332, 487, 494, 920, 1150
PspPPI RGGWCCY 1 cut(s) 920
PstI CTGCAG 1 cut(s) 606
PsuI RGATCY 1 cut(s) 137
PvuI CGATCG 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 703
RsaI GTAC 2 cut(s) 798, 1030
RsaNI GTAC 2 cut(s) 797, 1029
Rsr2I CGGWCCG 1 cut(s) 494
RsrII CGGWCCG 1 cut(s) 494
SacII CCGCGG 1 cut(s) 493
Sau3AI GATC 5 cut(s) 137, 336, 432, 450, 857
Sau96I GGNCC 6 cut(s) 163, 332, 487, 494, 920, 1150
SchI GAGTC 2 cut(s) 201, 666
ScrFI CCNGG 9 cut(s) 161, 359, 375, 468, 498, 669, 841, 917, 1140
SfaNI GCATC 4 cut(s) 156, 270, 292, 1117
SfcI CTRYAG 1 cut(s) 602
SfoI GGCGCC 1 cut(s) 187
Sfr303I CCGCGG 1 cut(s) 493
SgrAI CRCCGGYG 1 cut(s) 131
SgrBI CCGCGG 1 cut(s) 493
SinI GGWCC 3 cut(s) 487, 494, 920
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SnaBI TACGTA 1 cut(s) 905
Sse9I AATT 4 cut(s) 427, 572, 642, 1159
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 1 cut(s) 567
StyD4I CCNGG 9 cut(s) 159, 357, 373, 466, 496, 667, 839, 915, 1138
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 100, 170
TaiI ACGT 6 cut(s) 123, 291, 426, 636, 907, 942
TaqI TCGA 5 cut(s) 264, 321, 339, 503, 583
TasI AATT 4 cut(s) 427, 572, 642, 1159
TauI GCSGC 4 cut(s) 147, 176, 329, 700
TfiI GAWTC 2 cut(s) 722, 774
TscAI CASTG 3 cut(s) 103, 682, 841
TseFI GTSAC 1 cut(s) 846
TseI GCWGC 9 cut(s) 281, 458, 604, 700, 890, 911, 1000, 1039, 1192
Tsp45I GTSAC 1 cut(s) 846
TspDTI ATGAA 5 cut(s) 115, 403, 488, 752, 853
TspRI CASTG 3 cut(s) 103, 682, 841
VpaK11BI GGWCC 3 cut(s) 487, 494, 920
XapI RAATTY 2 cut(s) 572, 1159
XspI CTAG 1 cut(s) 567
ZraI GACGTC 2 cut(s) 424, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.