RLG00000007903

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
22643511 .. 22645492
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007903

Sequence Viewer

Length: 984 bp
ATGGTGGAACCCAACCTCTCCTTCCTCTCCCTCCTCCTCCTCCTCCTCCCTCTCGCTCTCCTCCTCCTCCTCTACCTCATTGTTCGCCCCCGGCCCGCCACCGTCCCAATCAAAAACCGCCACGTCTTCATCACCGGTGGATCCAGTGGCATCGGCCTCGCCCTGGCCCACCGTGCCACCTCTGAGGGAGCCAAAGTCTCCATCCTCGCCCGCTCCCTCGACAAGCTCGAGGAGGCCAAGAATTACATCCAGCTCTCCACCGGCATTGACGTCGCCATCTTCGCCGCCGACGTCCGCGACTATGACGCCATTTCCAAGGCTGTCGAGTCAGCAGGCCCAATCGACGTGTTGGTCGTCAACCAGGGAGTGTTTGTCCCTGGGGAGCTGGAGAAGCAGGGATTGGATGAGGTGAGGTTCATGGTGGATGTCAATTTGATGGGTAGCTTCAACGTGATCAAAGCTGCTCTGCCAGGAATGAAGGACAGGAAGGACCGTGGACCGGGTTCGATTGCTCTGATGTCGTCGCAGGCCGGTCAGGTTGGGATTTATGGCTACACGGCTTATTCAGCTAGCAAATTTGGGCTTCGGGGTTTGGCGGAAGCTCTGCAGCAAGAGGTTATTGCAGATGACATTCACGTTTCACTGATTTTCCCTCCAGATACTGACACTCCTGGACTCACTGAAGAAACTAAGAAGAGGCCGCAGCTGACTAGCATTATTGCGGAATCATCTGGTGCAATGAAAGCCGAGGAAGTAGCAAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCCATTGCCACTGCCGGGTTGTCGCCTCAGAGATCATTCGTCATGGCATTTGTGGAGGTGGTTGCTGCTGGTGTAATACGGATAGCTGCTCTGGGATTTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGGACCTGA

Protein Analysis

328

Amino Acids

35.13

Weight (kDa)

6.98

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 41 - 232 4.2e-44 short chain dehydrogenase
KR PF08659 42 - 204 1.1e-09 KR domain
adh_short_C2 PF13561 49 - 253 9.7e-27 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 350
AatII GACGTC 2 cut(s) 273, 294
AccBSI CCGCTC 1 cut(s) 213
AccI GTMKAC 2 cut(s) 941, 949
AccII CGCG 1 cut(s) 297
AciI CCGC 8 cut(s) 96, 118, 211, 285, 295, 596, 701, 722
AclWI GGATC 2 cut(s) 135, 148
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 3 cut(s) 270, 291, 306
AfiI CCNNNNNNNGG 3 cut(s) 163, 499, 843
AflIII ACRYGT 1 cut(s) 345
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 2 cut(s) 448, 815
AjiI CACGTC 2 cut(s) 124, 346
AjnI CCWGG 5 cut(s) 162, 360, 376, 469, 670
AjuI GAANNNNNNNTTGG 3 cut(s) 37, 383, 415
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 2 cut(s) 135, 148
AlwNI CAGNNNCTG 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 7 cut(s) 92, 154, 165, 234, 334, 528, 698
ApeKI GCWGC 5 cut(s) 461, 607, 703, 893, 914
ApoI RAATTY 1 cut(s) 575
AsiGI ACCGGT 1 cut(s) 134
AspS9I GGNCC 6 cut(s) 93, 166, 335, 490, 497, 978
AsuC2I CCSGG 3 cut(s) 91, 501, 844
AsuHPI GGTGA 2 cut(s) 124, 421
AsuNHI GCTAGC 1 cut(s) 569
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 3 cut(s) 490, 497, 978
BamHI GGATCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 5 cut(s) 448, 619, 715, 880, 901
BccI CCATC 4 cut(s) 209, 284, 430, 767
BceAI ACGGC 1 cut(s) 573
BcgI CGANNNNNNTGC 4 cut(s) 139, 173, 253, 287
BciT130I CCWGG 5 cut(s) 164, 362, 378, 471, 672
BclI TGATCA 1 cut(s) 453
BcnI CCSGG 3 cut(s) 91, 501, 844
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 570, 711
BfmI CTRYAG 1 cut(s) 605
BisI GCNGC 7 cut(s) 285, 462, 608, 701, 704, 894, 915
BlsI GCNGC 7 cut(s) 286, 463, 609, 702, 705, 895, 916
Bme1390I CCNGG 8 cut(s) 91, 164, 362, 378, 471, 501, 672, 844
Bme18I GGWCC 3 cut(s) 490, 497, 978
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 2 cut(s) 124, 346
BmgT120I GGNCC 6 cut(s) 93, 166, 335, 490, 497, 978
BmiI GGNNCC 3 cut(s) 9, 142, 190
BmrFI CCNGG 8 cut(s) 91, 164, 362, 378, 471, 501, 672, 844
BmsI GCATC 1 cut(s) 159
BmtI GCTAGC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 2 cut(s) 407, 639
BpuMI CCSGG 3 cut(s) 91, 501, 844
BsaHI GRCGYC 3 cut(s) 270, 291, 306
BsaJI CCNNGG 8 cut(s) 89, 162, 315, 361, 376, 377, 493, 747
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 6 cut(s) 180, 210, 357, 387, 652, 682
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 499, 843
Bse118I RCCGGY 3 cut(s) 134, 260, 530
Bse1I ACTGG 1 cut(s) 144
Bse3DI GCAATG 2 cut(s) 744, 831
BseBI CCWGG 5 cut(s) 164, 362, 378, 471, 672
BseDI CCNNGG 8 cut(s) 89, 162, 315, 361, 376, 377, 493, 747
BseGI GGATG 5 cut(s) 201, 246, 409, 430, 778
BseLI CCNNNNNNNGG 3 cut(s) 163, 499, 843
BseMI GCAATG 2 cut(s) 744, 831
BseMII CTCAG 2 cut(s) 174, 869
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 5 cut(s) 448, 619, 715, 880, 901
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 7 cut(s) 94, 156, 167, 236, 336, 530, 700
BshTI ACCGGT 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 6 cut(s) 91, 135, 261, 500, 531, 843
BslFI GGGAC 2 cut(s) 89, 359
BslI CCNNNNNNNGG 3 cut(s) 163, 499, 843
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 89, 359
BsnI GGCC 7 cut(s) 94, 156, 167, 236, 336, 530, 700
BsoBI CYCGRG 1 cut(s) 227
Bsp143I GATC 3 cut(s) 140, 453, 860
BspACI CCGC 8 cut(s) 96, 118, 211, 285, 295, 596, 701, 722
BspANI GGCC 7 cut(s) 94, 156, 167, 236, 336, 530, 700
BspCNI CTCAG 2 cut(s) 175, 868
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 3 cut(s) 9, 142, 190
BspMAI CTGCAG 1 cut(s) 609
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 2 cut(s) 135, 148
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 744, 831
BsrFI RCCGGY 3 cut(s) 134, 260, 530
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 3 cut(s) 134, 260, 530
BssECI CCNNGG 8 cut(s) 89, 162, 315, 361, 376, 377, 493, 747
BssMI GATC 3 cut(s) 140, 453, 860
BssNAI GTATAC 2 cut(s) 942, 950
BssNI GRCGYC 3 cut(s) 270, 291, 306
BssT1I CCWWGG 1 cut(s) 315
Bst1107I GTATAC 2 cut(s) 942, 950
Bst2UI CCWGG 5 cut(s) 164, 362, 378, 471, 672
Bst4CI ACNGT 3 cut(s) 103, 173, 494
Bst6I CTCTTC 1 cut(s) 689
BstACI GRCGYC 3 cut(s) 270, 291, 306
BstC8I GCNNGC 5 cut(s) 96, 211, 334, 528, 571
BstDEI CTNAG 3 cut(s) 183, 690, 855
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 5 cut(s) 201, 246, 409, 430, 778
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 3 cut(s) 143, 456, 863
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 3 cut(s) 140, 453, 860
BstMWI GCNNNNNNNGC 6 cut(s) 173, 281, 391, 566, 743, 764
BstNI CCWGG 5 cut(s) 164, 362, 378, 471, 672
BstSCI CCNGG 8 cut(s) 89, 162, 360, 376, 469, 499, 670, 842
BstSFI CTRYAG 1 cut(s) 605
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 5 cut(s) 448, 619, 715, 880, 901
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BstZ17I GTATAC 2 cut(s) 942, 950
BsuRI GGCC 7 cut(s) 94, 156, 167, 236, 336, 530, 700
BtgI CCRYGG 1 cut(s) 493
BtrI CACGTC 2 cut(s) 124, 346
BtsCI GGATG 5 cut(s) 201, 246, 409, 430, 778
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 5 cut(s) 151, 641, 678, 837, 935
Cac8I GCNNGC 5 cut(s) 96, 211, 334, 528, 571
CaiI CAGNNNCTG 1 cut(s) 662
Cfr10I RCCGGY 3 cut(s) 134, 260, 530
Cfr13I GGNCC 6 cut(s) 93, 166, 335, 490, 497, 978
CseI GACGC 1 cut(s) 314
CspAI ACCGGT 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 3 cut(s) 418, 871, 962
DdeI CTNAG 3 cut(s) 183, 690, 855
DpnI GATC 3 cut(s) 142, 455, 862
DpnII GATC 3 cut(s) 140, 453, 860
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 689
EarI CTCTTC 1 cut(s) 689
EciI GGCGGA 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 315
Eco47I GGWCC 3 cut(s) 490, 497, 978
Eco57I CTGAAG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 978
EcoRII CCWGG 5 cut(s) 162, 360, 376, 469, 670
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 3 cut(s) 421, 874, 965
FaiI YATR 7 cut(s) 303, 419, 549, 872, 942, 950, 963
FaqI GGGAC 2 cut(s) 89, 359
FatI CATG 3 cut(s) 417, 870, 961
FauI CCCGC 2 cut(s) 103, 218
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 2 cut(s) 941, 949
Fnu4HI GCNGC 7 cut(s) 285, 462, 608, 701, 704, 894, 915
FokI GGATG 5 cut(s) 188, 233, 416, 437, 785
Fsp4HI GCNGC 7 cut(s) 285, 462, 608, 701, 704, 894, 915
FspBI CTAG 2 cut(s) 570, 711
GluI GCNGC 7 cut(s) 285, 462, 608, 701, 704, 894, 915
GsuI CTGGAG 2 cut(s) 407, 639
HaeIII GGCC 7 cut(s) 94, 156, 167, 236, 336, 530, 700
HapII CCGG 6 cut(s) 91, 135, 261, 500, 531, 843
HgaI GACGC 1 cut(s) 314
Hin1I GRCGYC 3 cut(s) 270, 291, 306
Hin1II CATG 3 cut(s) 421, 874, 965
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 4 cut(s) 326, 675, 725, 777
HpaII CCGG 6 cut(s) 91, 135, 261, 500, 531, 843
HphI GGTGA 2 cut(s) 124, 421
Hpy166II GTNNAC 4 cut(s) 358, 497, 942, 950
Hpy188I TCNGA 3 cut(s) 184, 516, 858
Hpy188III TCNNGA 1 cut(s) 656
Hpy8I GTNNAC 4 cut(s) 358, 497, 942, 950
Hpy99I CGWCG 4 cut(s) 275, 293, 347, 526
HpyAV CCTTC 4 cut(s) 31, 472, 481, 809
HpyCH4III ACNGT 3 cut(s) 103, 173, 494
HpyCH4IV ACGT 6 cut(s) 123, 270, 291, 345, 450, 636
HpyCH4V TGCA 4 cut(s) 607, 623, 737, 807
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 281, 391, 566, 743, 764
HpyF3I CTNAG 3 cut(s) 183, 690, 855
HpySE526I ACGT 6 cut(s) 123, 270, 291, 345, 450, 636
Hsp92I GRCGYC 3 cut(s) 270, 291, 306
Hsp92II CATG 3 cut(s) 421, 874, 965
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 3 cut(s) 140, 453, 860
LmnI GCTCC 3 cut(s) 188, 218, 382
Lsp1109I GCAGC 5 cut(s) 448, 619, 715, 880, 901
LweI GCATC 1 cut(s) 159
MaeI CTAG 2 cut(s) 570, 711
MaeII ACGT 6 cut(s) 123, 270, 291, 345, 450, 636
MalI GATC 3 cut(s) 142, 455, 862
MbiI CCGCTC 1 cut(s) 213
MboI GATC 3 cut(s) 140, 453, 860
MboII GAAGA 4 cut(s) 118, 271, 695, 706
MflI RGATCY 1 cut(s) 140
MluCI AATT 4 cut(s) 241, 430, 575, 934
MlyI GAGTC 2 cut(s) 335, 669
MspA1I CMGCKG 1 cut(s) 706
MspI CCGG 6 cut(s) 91, 135, 261, 500, 531, 843
MspR9I CCNGG 8 cut(s) 91, 164, 362, 378, 471, 501, 672, 844
MvaI CCWGG 5 cut(s) 164, 362, 378, 471, 672
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 6 cut(s) 173, 281, 391, 566, 743, 764
NciI CCSGG 3 cut(s) 91, 501, 844
NdeII GATC 3 cut(s) 140, 453, 860
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 3 cut(s) 421, 874, 965
NlaIV GGNNCC 3 cut(s) 9, 142, 190
NmeAIII GCCGAG 1 cut(s) 772
PaeR7I CTCGAG 1 cut(s) 227
PasI CCCWGGG 1 cut(s) 377
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 288, 351
PfeI GAWTC 2 cut(s) 725, 777
PfoI TCCNGGA 1 cut(s) 670
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 7 cut(s) 286, 463, 609, 702, 705, 895, 916
PleI GAGTC 2 cut(s) 334, 669
PpsI GAGTC 2 cut(s) 334, 669
PpuMI RGGWCCY 1 cut(s) 978
Psp5II RGGWCCY 1 cut(s) 978
Psp6I CCWGG 5 cut(s) 162, 360, 376, 469, 670
PspGI CCWGG 5 cut(s) 162, 360, 376, 469, 670
PspN4I GGNNCC 3 cut(s) 9, 142, 190
PspPI GGNCC 6 cut(s) 93, 166, 335, 490, 497, 978
PspPPI RGGWCCY 1 cut(s) 978
PspXI VCTCGAGB 1 cut(s) 227
PstI CTGCAG 1 cut(s) 609
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 706
SatI GCNGC 7 cut(s) 285, 462, 608, 701, 704, 894, 915
Sau3AI GATC 3 cut(s) 140, 453, 860
Sau96I GGNCC 6 cut(s) 93, 166, 335, 490, 497, 978
SchI GAGTC 2 cut(s) 335, 669
ScrFI CCNGG 8 cut(s) 91, 164, 362, 378, 471, 501, 672, 844
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 605
Sfr274I CTCGAG 1 cut(s) 227
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 3 cut(s) 490, 497, 978
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 241, 430, 575, 934
SsiI CCGC 8 cut(s) 96, 118, 211, 285, 295, 596, 701, 722
SspMI CTAG 2 cut(s) 570, 711
StyD4I CCNGG 8 cut(s) 89, 162, 360, 376, 469, 499, 670, 842
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 103, 173, 494
TaiI ACGT 6 cut(s) 126, 273, 294, 348, 453, 639
TaqI TCGA 5 cut(s) 219, 228, 324, 342, 506
TasI AATT 4 cut(s) 241, 430, 575, 934
TauI GCSGC 2 cut(s) 287, 703
TfiI GAWTC 2 cut(s) 725, 777
TscAI CASTG 5 cut(s) 151, 648, 685, 844, 935
TseI GCWGC 5 cut(s) 461, 607, 703, 893, 914
TspDTI ATGAA 4 cut(s) 118, 406, 491, 755
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 5 cut(s) 151, 648, 685, 844, 935
VpaK11BI GGWCC 3 cut(s) 490, 497, 978
XapI RAATTY 1 cut(s) 575
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 2 cut(s) 941, 949
XspI CTAG 2 cut(s) 570, 711
ZraI GACGTC 2 cut(s) 271, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.